RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 XDHP47989 1333 aa18.93■□□□□ 0.62
CPSF1-208ENST00000532560 ZKSCAN2Q63HK3 967 aa18.92■□□□□ 0.62
CPSF1-208ENST00000532560 TBC1D16Q8TBP0 767 aa18.92■□□□□ 0.62
CPSF1-208ENST00000532560 MPHOSPH8Q99549 860 aa18.92■□□□□ 0.62
CPSF1-208ENST00000532560 GGA1Q9UJY5 639 aa18.92■□□□□ 0.62
CPSF1-208ENST00000532560 MINPP1Q9UNW1 487 aa18.92■□□□□ 0.62
CPSF1-208ENST00000532560 C6orf229H3BNL8 230 aa18.91■□□□□ 0.62
CPSF1-208ENST00000532560 UFL1O94874 794 aa18.91■□□□□ 0.62
CPSF1-208ENST00000532560 CCDC57Q2TAC2 916 aa18.91■□□□□ 0.62
CPSF1-208ENST00000532560 ANKRD44Q8N8A2 993 aa18.91■□□□□ 0.62
CPSF1-208ENST00000532560 L3MBTL3Q96JM7 780 aaPredicted RBP18.91■□□□□ 0.62
CPSF1-208ENST00000532560 EYA3Q99504 573 aa18.91■□□□□ 0.62
CPSF1-208ENST00000532560 DDNO94850 711 aaPredicted RBP18.9■□□□□ 0.62
CPSF1-208ENST00000532560 EIF6P56537 245 aaKnown RBP18.9■□□□□ 0.62
CPSF1-208ENST00000532560 WASHC4Q2M389 1173 aa18.9■□□□□ 0.62
CPSF1-208ENST00000532560 A0A1B0GUL6 1792 aa18.89■□□□□ 0.61
CPSF1-208ENST00000532560 UBTFL1P0CB47 393 aaPredicted RBP18.89■□□□□ 0.61
CPSF1-208ENST00000532560 ATP2B4P23634 1241 aa18.89■□□□□ 0.61
CPSF1-208ENST00000532560 GPC2Q8N158 579 aa18.89■□□□□ 0.61
CPSF1-208ENST00000532560 RRAGCQ9HB90 399 aa18.89■□□□□ 0.61
CPSF1-208ENST00000532560 ZNRF3Q9ULT6 936 aa18.89■□□□□ 0.61
CPSF1-208ENST00000532560 TNNQ9UQP3 1299 aa18.89■□□□□ 0.61
CPSF1-208ENST00000532560 VEGFAP15692 232 aaPredicted RBP18.88■□□□□ 0.61
CPSF1-208ENST00000532560 TAF7LQ5H9L4 462 aa18.88■□□□□ 0.61
CPSF1-208ENST00000532560 ANKRD2Q9GZV1 360 aa18.88■□□□□ 0.61
CPSF1-208ENST00000532560 HDAC5Q9UQL6 1122 aa18.88■□□□□ 0.61
CPSF1-208ENST00000532560 SCN4AP35499 1836 aa18.88■□□□□ 0.61
CPSF1-208ENST00000532560 POTECB2RU33 542 aa18.87■□□□□ 0.61
CPSF1-208ENST00000532560 CHRNDQ07001 517 aa18.87■□□□□ 0.61
CPSF1-208ENST00000532560 CLUAP1Q96AJ1 413 aa18.87■□□□□ 0.61
CPSF1-208ENST00000532560 GPR101Q96P66 508 aaPredicted RBP18.87■□□□□ 0.61
CPSF1-208ENST00000532560 MEIS3Q99687 375 aa18.87■□□□□ 0.61
CPSF1-208ENST00000532560 MED23Q9ULK4 1368 aa18.86■□□□□ 0.61
CPSF1-208ENST00000532560 IQCA1LA6NCM1 817 aa18.86■□□□□ 0.61
CPSF1-208ENST00000532560 GNAI3P08754 354 aa18.86■□□□□ 0.61
CPSF1-208ENST00000532560 ZNF594Q96JF6 807 aaPredicted RBP18.86■□□□□ 0.61
CPSF1-208ENST00000532560 ZC3H12CQ9C0D7 883 aaKnown RBP18.86■□□□□ 0.61
CPSF1-208ENST00000532560 LEMD3Q9Y2U8 911 aa18.86■□□□□ 0.61
CPSF1-208ENST00000532560 YDJCA8MPS7 323 aa18.85■□□□□ 0.61
CPSF1-208ENST00000532560 RIMBP2O15034 1052 aa18.85■□□□□ 0.61
CPSF1-208ENST00000532560 TOMM70O94826 608 aa18.85■□□□□ 0.61
CPSF1-208ENST00000532560 LDHAL6AQ6ZMR3 332 aa18.85■□□□□ 0.61
CPSF1-208ENST00000532560 FTSJ3Q8IY81 847 aaKnown RBP18.85■□□□□ 0.61
CPSF1-208ENST00000532560 TMEM57Q8N5G2 664 aa18.85■□□□□ 0.61
CPSF1-208ENST00000532560 ECE2O60344 883 aa18.84■□□□□ 0.61
CPSF1-208ENST00000532560 C1QTNF8P60827 252 aa18.84■□□□□ 0.61
CPSF1-208ENST00000532560 CXCL9Q07325 125 aa18.84■□□□□ 0.61
CPSF1-208ENST00000532560 C16orf71Q8IYS4 520 aaPredicted RBP18.84■□□□□ 0.61
CPSF1-208ENST00000532560 DZIP1LQ8IYY4 767 aaKnown RBP18.84■□□□□ 0.61
CPSF1-208ENST00000532560 DBNDD1Q9H9R9 158 aa18.84■□□□□ 0.61
CPSF1-208ENST00000532560 RCAN3Q9UKA8 241 aa18.84■□□□□ 0.61
CPSF1-208ENST00000532560 LRRFIP2Q9Y608 721 aaKnown RBP18.84■□□□□ 0.61
CPSF1-208ENST00000532560 ZNF804BA4D1E1 1349 aa18.83■□□□□ 0.61
CPSF1-208ENST00000532560 CIAPIN1Q6FI81 312 aa18.83■□□□□ 0.6
CPSF1-208ENST00000532560 RBM46Q8TBY0 533 aaKnown RBP18.83■□□□□ 0.6
CPSF1-208ENST00000532560 CNNM1Q9NRU3 951 aa18.83■□□□□ 0.6
CPSF1-208ENST00000532560 GJA3Q9Y6H8 435 aa18.83■□□□□ 0.6
CPSF1-208ENST00000532560 RLBP1P12271 317 aa18.82■□□□□ 0.6
CPSF1-208ENST00000532560 TNIP1Q15025 636 aa18.82■□□□□ 0.6
CPSF1-208ENST00000532560 DOK7Q18PE1 504 aa18.82■□□□□ 0.6
CPSF1-208ENST00000532560 HACL1Q9UJ83 578 aa18.82■□□□□ 0.6
CPSF1-208ENST00000532560 SCN9AQ15858 1988 aa18.81■□□□□ 0.6
CPSF1-208ENST00000532560 WTIPA6NIX2 430 aaPredicted RBP18.81■□□□□ 0.6
CPSF1-208ENST00000532560 RAD17O75943 681 aa18.81■□□□□ 0.6
CPSF1-208ENST00000532560 KCNJ4P48050 445 aa18.81■□□□□ 0.6
CPSF1-208ENST00000532560 RFX5P48382 616 aaPredicted RBP18.81■□□□□ 0.6
CPSF1-208ENST00000532560 SCNN1DP51172 638 aa18.81■□□□□ 0.6
CPSF1-208ENST00000532560 C15orf52Q6ZUT6 534 aaKnown RBP18.81■□□□□ 0.6
CPSF1-208ENST00000532560 PUS3Q9BZE2 481 aaKnown RBP18.81■□□□□ 0.6
CPSF1-208ENST00000532560 RIPOR2Q9Y4F9 1068 aa18.81■□□□□ 0.6
CPSF1-208ENST00000532560 PSME4Q14997 1843 aa18.81■□□□□ 0.6
CPSF1-208ENST00000532560 MROH5Q6ZUA9 1318 aa18.8■□□□□ 0.6
CPSF1-208ENST00000532560 G3V3G9 751 aa18.8■□□□□ 0.6
CPSF1-208ENST00000532560 TAF5LO75529 589 aa18.8■□□□□ 0.6
CPSF1-208ENST00000532560 DCAF8Q5TAQ9 597 aa18.8■□□□□ 0.6
CPSF1-208ENST00000532560 HELBQ8NG08 1087 aaPredicted RBP18.8■□□□□ 0.6
CPSF1-208ENST00000532560 TAF1DQ9H5J8 278 aaPredicted RBP18.8■□□□□ 0.6
CPSF1-208ENST00000532560 IRS2Q9Y4H2 1338 aa18.79■□□□□ 0.6
CPSF1-208ENST00000532560 MS4A1P11836 297 aa18.79■□□□□ 0.6
CPSF1-208ENST00000532560 KLRK1P26718 216 aa18.79■□□□□ 0.6
CPSF1-208ENST00000532560 LMOD1P29536 600 aaPredicted RBP18.79■□□□□ 0.6
CPSF1-208ENST00000532560 MTX1Q13505 466 aa18.79■□□□□ 0.6
CPSF1-208ENST00000532560 PODNQ7Z5L7 613 aa18.79■□□□□ 0.6
CPSF1-208ENST00000532560 ITPRIPQ8IWB1 547 aa18.79■□□□□ 0.6
CPSF1-208ENST00000532560 YTHDC1Q96MU7 727 aaKnown RBP18.79■□□□□ 0.6
CPSF1-208ENST00000532560 ZNF609O15014 1411 aa18.79■□□□□ 0.6
CPSF1-208ENST00000532560 ADAMTSL1Q8N6G6 1762 aa18.78■□□□□ 0.6
CPSF1-208ENST00000532560 PSMD14O00487 310 aa18.78■□□□□ 0.6
CPSF1-208ENST00000532560 GNAI2P04899 355 aa18.78■□□□□ 0.6
CPSF1-208ENST00000532560 EPHX2P34913 555 aa18.78■□□□□ 0.6
CPSF1-208ENST00000532560 GMPSP49915 693 aaPredicted RBP18.78■□□□□ 0.6
CPSF1-208ENST00000532560 PTPN12Q05209 780 aaKnown RBP18.78■□□□□ 0.6
CPSF1-208ENST00000532560 TXNRD3Q86VQ6 643 aa18.78■□□□□ 0.6
CPSF1-208ENST00000532560 KLHDC4Q8TBB5 520 aa18.78■□□□□ 0.6
CPSF1-208ENST00000532560 COA1Q9GZY4 146 aa18.78■□□□□ 0.6
CPSF1-208ENST00000532560 FBXO3Q9UK99 471 aa18.78■□□□□ 0.6
CPSF1-208ENST00000532560 SNAP23O00161 211 aa18.77■□□□□ 0.6
CPSF1-208ENST00000532560 RPS12P25398 132 aaKnown RBP18.77■□□□□ 0.6
CPSF1-208ENST00000532560 FSTL1Q12841 308 aa18.77■□□□□ 0.6
CPSF1-208ENST00000532560 UBE4AQ14139 1066 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms