RNA–Protein interactions for RNA: ENST00000529813.1

USP47-208, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 3,123 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-208ENST00000529813 ZNRF3Q9ULT6 936 aa5.79□□□□□ -1.48
USP47-208ENST00000529813 LRRFIP2Q9Y608 721 aaKnown RBP5.79□□□□□ -1.48
USP47-208ENST00000529813 PTPRCP08575 1304 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 KIF16BQ96L93 1317 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 KIF3CO14782 793 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 ECE2O60344 883 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 EPS15P42566 896 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 CCT4P50991 539 aaKnown RBP5.78□□□□□ -1.48
USP47-208ENST00000529813 CXCL9Q07325 125 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 MAP1SQ66K74 1059 aaPredicted RBP5.78□□□□□ -1.48
USP47-208ENST00000529813 PANK1Q8TE04 598 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 MEIS3Q99687 375 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 HACL1Q9UJ83 578 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 MINPP1Q9UNW1 487 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 QSER1Q2KHR3 1735 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 ZNF831Q5JPB2 1677 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 IQCA1LA6NCM1 817 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 TOMM70O94826 608 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 GMPSP49915 693 aaPredicted RBP5.78□□□□□ -1.48
USP47-208ENST00000529813 CHRNDQ07001 517 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 TBC1D10BQ4KMP7 808 aaPredicted RBP5.78□□□□□ -1.48
USP47-208ENST00000529813 PSMD1Q99460 953 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 SCAF8Q9UPN6 1271 aaKnown RBP5.78□□□□□ -1.48
USP47-208ENST00000529813 XDHP47989 1333 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 ZBED9Q6R2W3 1325 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 CDHR2Q9BYE9 1310 aa5.78□□□□□ -1.48
USP47-208ENST00000529813 IBTKQ9P2D0 1353 aaPredicted RBP5.77□□□□□ -1.49
USP47-208ENST00000529813 H7C1D1 291 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 TRIM27P14373 513 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 EPHX2P34913 555 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 RBM5P52756 815 aaKnown RBP eCLIP5.77□□□□□ -1.49
USP47-208ENST00000529813 KIAA2012Q0VF49 1180 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 ATF7IPQ6VMQ6 1270 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 TMC4Q7Z404 712 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 MXD3Q9BW11 206 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 USP44Q9H0E7 712 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 PA2G4Q9UQ80 394 aaKnown RBP5.77□□□□□ -1.49
USP47-208ENST00000529813 AFDNP55196 1824 aaKnown RBP5.77□□□□□ -1.49
USP47-208ENST00000529813 SLX4Q8IY92 1834 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 SHTN1A0MZ66 631 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 PSMD14O00487 310 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 ATP2B4P23634 1241 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 KLRK1P26718 216 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 GTF2IP78347 998 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 TNIP1Q15025 636 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 TMEM57Q8N5G2 664 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 BSDC1Q9NW68 430 aaPredicted RBP5.77□□□□□ -1.49
USP47-208ENST00000529813 RCAN3Q9UKA8 241 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 SRGAP3O43295 1099 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 CT47B1P0C2W7 299 aaPredicted RBP5.77□□□□□ -1.49
USP47-208ENST00000529813 FOXO4P98177 505 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 LRRC24Q50LG9 513 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 GORABQ5T7V8 394 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 SAMD7Q7Z3H4 446 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 DZIP1LQ8IYY4 767 aaKnown RBP5.77□□□□□ -1.49
USP47-208ENST00000529813 NEUROD6Q96NK8 337 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 ANKRD2Q9GZV1 360 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 CNOT7Q9UIV1 285 aaKnown RBP5.77□□□□□ -1.49
USP47-208ENST00000529813 COG6Q9Y2V7 657 aa5.77□□□□□ -1.49
USP47-208ENST00000529813 SCN7AQ01118 1682 aa5.76□□□□□ -1.49
USP47-208ENST00000529813 ZNF804BA4D1E1 1349 aa5.76□□□□□ -1.49
USP47-208ENST00000529813 TXNRD3Q86VQ6 643 aa5.76□□□□□ -1.49
USP47-208ENST00000529813 KIAA0825Q8IV33 1275 aa5.76□□□□□ -1.49
USP47-208ENST00000529813 MICALL2Q8IY33 904 aa5.76□□□□□ -1.49
USP47-208ENST00000529813 TRMT2AQ8IZ69 625 aaKnown RBP5.76□□□□□ -1.49
USP47-208ENST00000529813 SMC1BQ8NDV3 1235 aa5.76□□□□□ -1.49
USP47-208ENST00000529813 TAF1DQ9H5J8 278 aaPredicted RBP5.76□□□□□ -1.49
USP47-208ENST00000529813 NUP98P52948 1817 aa5.76□□□□□ -1.49
USP47-208ENST00000529813 GNAI3P08754 354 aa5.76□□□□□ -1.49
USP47-208ENST00000529813 GYG1P46976 350 aa5.76□□□□□ -1.49
USP47-208ENST00000529813 GRIPAP1Q4V328 841 aa5.76□□□□□ -1.49
USP47-208ENST00000529813 GPC2Q8N158 579 aa5.76□□□□□ -1.49
USP47-208ENST00000529813 ABT1Q9ULW3 272 aaKnown RBP5.76□□□□□ -1.49
USP47-208ENST00000529813 LAMB4A4D0S4 1761 aa5.76□□□□□ -1.49
USP47-208ENST00000529813 LTBP3Q9NS15 1303 aa5.76□□□□□ -1.49
USP47-208ENST00000529813 YDJCA8MPS7 323 aa5.75□□□□□ -1.49
USP47-208ENST00000529813 FZD9O00144 591 aa5.75□□□□□ -1.49
USP47-208ENST00000529813 CASP7P55210 303 aa5.75□□□□□ -1.49
USP47-208ENST00000529813 FMR1Q06787 632 aaKnown RBP eCLIP5.75□□□□□ -1.49
USP47-208ENST00000529813 PRKG1Q13976 671 aa5.75□□□□□ -1.49
USP47-208ENST00000529813 TTLL5Q6EMB2 1281 aa5.75□□□□□ -1.49
USP47-208ENST00000529813 OGFOD1Q8N543 542 aa5.75□□□□□ -1.49
USP47-208ENST00000529813 CEP126Q9P2H0 1117 aa5.75□□□□□ -1.49
USP47-208ENST00000529813 MKRN1Q9UHC7 482 aaKnown RBP5.75□□□□□ -1.49
USP47-208ENST00000529813 HDAC5Q9UQL6 1122 aa5.75□□□□□ -1.49
USP47-208ENST00000529813 GNAI2P04899 355 aa5.75□□□□□ -1.49
USP47-208ENST00000529813 CSF1RP07333 972 aa5.75□□□□□ -1.49
USP47-208ENST00000529813 DLK2Q6UY11 383 aa5.75□□□□□ -1.49
USP47-208ENST00000529813 RLBP1P12271 317 aa5.74□□□□□ -1.49
USP47-208ENST00000529813 SCNN1DP51172 638 aa5.74□□□□□ -1.49
USP47-208ENST00000529813 G3BP1Q13283 466 aaKnown RBP eCLIP5.74□□□□□ -1.49
USP47-208ENST00000529813 TTLL12Q14166 644 aaPredicted RBP5.74□□□□□ -1.49
USP47-208ENST00000529813 CHADLQ6NUI6 762 aa5.74□□□□□ -1.49
USP47-208ENST00000529813 ZNF804AQ7Z570 1209 aa5.74□□□□□ -1.49
USP47-208ENST00000529813 CNTROBQ8N137 903 aa5.74□□□□□ -1.49
USP47-208ENST00000529813 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.74□□□□□ -1.49
USP47-208ENST00000529813 KAZALD1Q96I82 304 aa5.74□□□□□ -1.49
USP47-208ENST00000529813 USP17L3A6NCW0 530 aa5.74□□□□□ -1.49
USP47-208ENST00000529813 USP17L4A6NCW7 530 aa5.74□□□□□ -1.49
USP47-208ENST00000529813 POTECB2RU33 542 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms