RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 STARD13Q9Y3M8 1113 aa8.37□□□□□ -1.07
CD44-230ENST00000528922 LOC102724428A0A0B4J2F2 783 aa8.36□□□□□ -1.07
CD44-230ENST00000528922 EIF1AYO14602 144 aaKnown RBP8.36□□□□□ -1.07
CD44-230ENST00000528922 SIK1P57059 783 aa8.36□□□□□ -1.07
CD44-230ENST00000528922 NPAS4Q8IUM7 802 aa8.36□□□□□ -1.07
CD44-230ENST00000528922 SALL4Q9UJQ4 1053 aa8.36□□□□□ -1.07
CD44-230ENST00000528922 NAGPAQ9UK23 515 aa8.36□□□□□ -1.07
CD44-230ENST00000528922 PHF20L1A8MW92 1017 aa8.35□□□□□ -1.07
CD44-230ENST00000528922 ARHGEF15O94989 841 aa8.35□□□□□ -1.07
CD44-230ENST00000528922 POLR3DP05423 398 aaPredicted RBP8.35□□□□□ -1.07
CD44-230ENST00000528922 FMR1Q06787 632 aaKnown RBP eCLIP8.35□□□□□ -1.07
CD44-230ENST00000528922 HYAL2Q12891 473 aa8.35□□□□□ -1.07
CD44-230ENST00000528922 SVOPQ8N4V2 548 aa8.35□□□□□ -1.07
CD44-230ENST00000528922 ZSCAN1Q8NBB4 408 aa8.35□□□□□ -1.07
CD44-230ENST00000528922 PMEPA1Q969W9 287 aa8.35□□□□□ -1.07
CD44-230ENST00000528922 PODXL2Q9NZ53 605 aa8.35□□□□□ -1.07
CD44-230ENST00000528922 KIF4AO95239 1232 aa8.34□□□□□ -1.07
CD44-230ENST00000528922 NEFLP07196 543 aa8.34□□□□□ -1.07
CD44-230ENST00000528922 CPB1P15086 417 aa8.34□□□□□ -1.07
CD44-230ENST00000528922 ALAS2P22557 587 aa8.34□□□□□ -1.07
CD44-230ENST00000528922 PCSK7Q16549 785 aa8.34□□□□□ -1.07
CD44-230ENST00000528922 FAM35AQ86V20 835 aa8.34□□□□□ -1.07
CD44-230ENST00000528922 CSRNP1Q96S65 589 aa8.34□□□□□ -1.07
CD44-230ENST00000528922 CPNE3O75131 537 aaKnown RBP8.33□□□□□ -1.08
CD44-230ENST00000528922 P4HBP07237 508 aaKnown RBP8.33□□□□□ -1.08
CD44-230ENST00000528922 PERM1Q5SV97 790 aa8.33□□□□□ -1.08
CD44-230ENST00000528922 CHSY3Q70JA7 882 aa8.33□□□□□ -1.08
CD44-230ENST00000528922 CEP120Q8N960 986 aa8.33□□□□□ -1.08
CD44-230ENST00000528922 AMOTL2Q9Y2J4 779 aa8.33□□□□□ -1.08
CD44-230ENST00000528922 ACPPP15309 386 aa8.32□□□□□ -1.08
CD44-230ENST00000528922 HOXB4P17483 251 aaPredicted RBP8.32□□□□□ -1.08
CD44-230ENST00000528922 MAPK8P45983 427 aa8.32□□□□□ -1.08
CD44-230ENST00000528922 MAP3K10Q02779 954 aa8.32□□□□□ -1.08
CD44-230ENST00000528922 ENOX2Q16206 610 aaKnown RBP8.32□□□□□ -1.08
CD44-230ENST00000528922 C20orf204Q6ZNR8 217 aa8.32□□□□□ -1.08
CD44-230ENST00000528922 NCAPG2Q86XI2 1143 aa8.32□□□□□ -1.08
CD44-230ENST00000528922 SETDB2Q96T68 719 aa8.32□□□□□ -1.08
CD44-230ENST00000528922 LPIN3Q9BQK8 851 aa8.32□□□□□ -1.08
CD44-230ENST00000528922 DNAJC25Q9H1X3 360 aa8.32□□□□□ -1.08
CD44-230ENST00000528922 LATS2Q9NRM7 1088 aa8.32□□□□□ -1.08
CD44-230ENST00000528922 WWC3Q9ULE0 1092 aa8.32□□□□□ -1.08
CD44-230ENST00000528922 PNMA6FA0A0J9YX94 578 aa8.31□□□□□ -1.08
CD44-230ENST00000528922 ALBP02768 609 aa8.31□□□□□ -1.08
CD44-230ENST00000528922 EIF2AK2P19525 551 aaKnown RBP8.31□□□□□ -1.08
CD44-230ENST00000528922 INSM1Q01101 510 aaPredicted RBP8.31□□□□□ -1.08
CD44-230ENST00000528922 PSAPL1Q6NUJ1 521 aa8.31□□□□□ -1.08
CD44-230ENST00000528922 GALNT12Q8IXK2 581 aa8.31□□□□□ -1.08
CD44-230ENST00000528922 TRPA1O75762 1119 aa8.3□□□□□ -1.08
CD44-230ENST00000528922 ERCC3P19447 782 aa8.3□□□□□ -1.08
CD44-230ENST00000528922 AMPD1P23109 780 aa8.3□□□□□ -1.08
CD44-230ENST00000528922 ATP11AP98196 1134 aa8.3□□□□□ -1.08
CD44-230ENST00000528922 COL19A1Q14993 1142 aa8.3□□□□□ -1.08
CD44-230ENST00000528922 PEAR1Q5VY43 1037 aaPredicted RBP8.3□□□□□ -1.08
CD44-230ENST00000528922 C8orf86Q6ZUL3 223 aa8.3□□□□□ -1.08
CD44-230ENST00000528922 MICALL1Q8N3F8 863 aa8.3□□□□□ -1.08
CD44-230ENST00000528922 NEDD1Q8NHV4 660 aa8.3□□□□□ -1.08
CD44-230ENST00000528922 NUDT8Q8WV74 236 aa8.3□□□□□ -1.08
CD44-230ENST00000528922 CCDC74AQ96AQ1 378 aa8.3□□□□□ -1.08
CD44-230ENST00000528922 NFKBIEO00221 500 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 GHRHP01286 108 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 IRS1P35568 1242 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 ELMSAN1Q6PJG2 1045 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 PLD4Q96BZ4 506 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 SPACA7Q96KW9 195 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 SMG9Q9H0W8 520 aaKnown RBP8.29□□□□□ -1.08
CD44-230ENST00000528922 RASSF4Q9H2L5 321 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 ENAMQ9NRM1 1142 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 DZANK1Q9NVP4 752 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 FRRS1LQ9P0K9 344 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 M0R082 166 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 EDN3P14138 238 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 TAGLNQ01995 201 aaKnown RBP8.29□□□□□ -1.08
CD44-230ENST00000528922 KANK3Q6NY19 840 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 FBXO33Q7Z6M2 555 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 ZNF417Q8TAU3 575 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 EPS8L3Q8TE67 593 aaKnown RBP8.29□□□□□ -1.08
CD44-230ENST00000528922 HHIPQ96QV1 700 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 ZNF587Q96SQ5 575 aaPredicted RBP8.29□□□□□ -1.08
CD44-230ENST00000528922 PBX4Q9BYU1 374 aa8.29□□□□□ -1.08
CD44-230ENST00000528922 A0A1W2PP55 124 aa8.28□□□□□ -1.08
CD44-230ENST00000528922 RGS9O75916 674 aaPredicted RBP8.28□□□□□ -1.08
CD44-230ENST00000528922 DGKGP49619 791 aa8.28□□□□□ -1.08
CD44-230ENST00000528922 SNRPNP63162 240 aaKnown RBP8.28□□□□□ -1.08
CD44-230ENST00000528922 COL9A3Q14050 684 aaPredicted RBP8.28□□□□□ -1.08
CD44-230ENST00000528922 GRIK5Q16478 980 aa8.28□□□□□ -1.08
CD44-230ENST00000528922 EAPPQ56P03 285 aaPredicted RBP8.28□□□□□ -1.08
CD44-230ENST00000528922 PI16Q6UXB8 463 aa8.28□□□□□ -1.08
CD44-230ENST00000528922 ADAMTSL4Q6UY14 1074 aa8.28□□□□□ -1.08
CD44-230ENST00000528922 RGS22Q8NE09 1264 aa8.28□□□□□ -1.08
CD44-230ENST00000528922 OSMRQ99650 979 aa8.28□□□□□ -1.08
CD44-230ENST00000528922 ZKSCAN3Q9BRR0 538 aa8.28□□□□□ -1.08
CD44-230ENST00000528922 NPHS2Q9NP85 383 aa8.28□□□□□ -1.08
CD44-230ENST00000528922 ADAMTS8Q9UP79 889 aa8.28□□□□□ -1.08
CD44-230ENST00000528922 CCDC9Q9Y3X0 531 aaKnown RBP8.28□□□□□ -1.08
CD44-230ENST00000528922 LDHBP07195 334 aaKnown RBP8.27□□□□□ -1.09
CD44-230ENST00000528922 TTC9Q92623 222 aa8.27□□□□□ -1.09
CD44-230ENST00000528922 RBSNQ9H1K0 784 aa8.27□□□□□ -1.09
CD44-230ENST00000528922 RRAGCQ9HB90 399 aa8.27□□□□□ -1.09
CD44-230ENST00000528922 JPH1Q9HDC5 661 aaPredicted RBP8.27□□□□□ -1.09
CD44-230ENST00000528922 AFF1P51825 1210 aaKnown RBP8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms