RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 TMX4Q9H1E5 349 aaPredicted RBP18.63■□□□□ 0.57
CPSF1-201ENST00000526271 ZEB1P37275 1124 aaPredicted RBP18.62■□□□□ 0.57
CPSF1-201ENST00000526271 RGS19P49795 217 aa18.62■□□□□ 0.57
CPSF1-201ENST00000526271 BRPF1P55201 1214 aaPredicted RBP18.62■□□□□ 0.57
CPSF1-201ENST00000526271 SPEF2Q9C093 1822 aa18.62■□□□□ 0.57
CPSF1-201ENST00000526271 RPS8P62241 208 aaKnown RBP18.61■□□□□ 0.57
CPSF1-201ENST00000526271 MCOLN1Q9GZU1 580 aa18.61■□□□□ 0.57
CPSF1-201ENST00000526271 C6orf229H3BNL8 230 aa18.6■□□□□ 0.57
CPSF1-201ENST00000526271 H7C1D1 291 aa18.6■□□□□ 0.57
CPSF1-201ENST00000526271 HUNKP57058 714 aa18.6■□□□□ 0.57
CPSF1-201ENST00000526271 C8orf58Q8NAV2 365 aa18.6■□□□□ 0.57
CPSF1-201ENST00000526271 HYPKQ9NX55 129 aa18.6■□□□□ 0.57
CPSF1-201ENST00000526271 PODXL2Q9NZ53 605 aa18.6■□□□□ 0.57
CPSF1-201ENST00000526271 CCDC85CA6NKD9 419 aa18.59■□□□□ 0.57
CPSF1-201ENST00000526271 VIL1P09327 827 aaKnown RBP18.59■□□□□ 0.57
CPSF1-201ENST00000526271 RBM26Q5T8P6 1007 aaKnown RBP18.59■□□□□ 0.57
CPSF1-201ENST00000526271 KRT26Q7Z3Y9 468 aa18.59■□□□□ 0.57
CPSF1-201ENST00000526271 ZBTB38Q8NAP3 1195 aaPredicted RBP18.59■□□□□ 0.57
CPSF1-201ENST00000526271 ZNF609O15014 1411 aa18.58■□□□□ 0.57
CPSF1-201ENST00000526271 ELL2O00472 640 aaPredicted RBP18.58■□□□□ 0.56
CPSF1-201ENST00000526271 GMLQ99445 158 aa18.58■□□□□ 0.56
CPSF1-201ENST00000526271 MYD88Q99836 296 aa18.58■□□□□ 0.56
CPSF1-201ENST00000526271 BEGAINQ9BUH8 593 aa18.58■□□□□ 0.56
CPSF1-201ENST00000526271 MYH3P11055 1940 aa18.57■□□□□ 0.56
CPSF1-201ENST00000526271 APAF1O14727 1248 aa18.57■□□□□ 0.56
CPSF1-201ENST00000526271 TSPYL6Q8N831 410 aa18.57■□□□□ 0.56
CPSF1-201ENST00000526271 CCDC85AQ96PX6 553 aaPredicted RBP18.57■□□□□ 0.56
CPSF1-201ENST00000526271 GBA2Q9HCG7 927 aaPredicted RBP18.57■□□□□ 0.56
CPSF1-201ENST00000526271 AKAP11Q9UKA4 1901 aa18.57■□□□□ 0.56
CPSF1-201ENST00000526271 RPS12P25398 132 aaKnown RBP18.56■□□□□ 0.56
CPSF1-201ENST00000526271 ZNF280AP59817 542 aaPredicted RBP18.56■□□□□ 0.56
CPSF1-201ENST00000526271 KIF4BQ2VIQ3 1234 aa18.56■□□□□ 0.56
CPSF1-201ENST00000526271 RGMBQ6NW40 437 aa18.56■□□□□ 0.56
CPSF1-201ENST00000526271 GGA3Q9NZ52 723 aa18.56■□□□□ 0.56
CPSF1-201ENST00000526271 SCAF8Q9UPN6 1271 aaKnown RBP18.56■□□□□ 0.56
CPSF1-201ENST00000526271 UFL1O94874 794 aa18.55■□□□□ 0.56
CPSF1-201ENST00000526271 PCCAP05165 728 aaPredicted RBP18.55■□□□□ 0.56
CPSF1-201ENST00000526271 IGKV5-2P06315 115 aa18.55■□□□□ 0.56
CPSF1-201ENST00000526271 NOGQ13253 232 aa18.55■□□□□ 0.56
CPSF1-201ENST00000526271 RIC3Q7Z5B4 369 aa18.55■□□□□ 0.56
CPSF1-201ENST00000526271 PRKRIP1Q9H875 184 aaPredicted RBP18.55■□□□□ 0.56
CPSF1-201ENST00000526271 PDE4DIPQ5VU43 2346 aa18.55■□□□□ 0.56
CPSF1-201ENST00000526271 CA12O43570 354 aa18.54■□□□□ 0.56
CPSF1-201ENST00000526271 KIF23Q02241 960 aaPredicted RBP18.54■□□□□ 0.56
CPSF1-201ENST00000526271 WDR43Q15061 677 aaKnown RBP eCLIP18.54■□□□□ 0.56
CPSF1-201ENST00000526271 IFT57Q9NWB7 429 aa18.54■□□□□ 0.56
CPSF1-201ENST00000526271 SLC34A2O95436 690 aa18.53■□□□□ 0.56
CPSF1-201ENST00000526271 CCDC184Q52MB2 194 aa18.53■□□□□ 0.56
CPSF1-201ENST00000526271 CDCA5Q96FF9 252 aa18.53■□□□□ 0.56
CPSF1-201ENST00000526271 EYA3Q99504 573 aa18.53■□□□□ 0.56
CPSF1-201ENST00000526271 METTL22Q9BUU2 404 aaPredicted RBP18.53■□□□□ 0.56
CPSF1-201ENST00000526271 MXD3Q9BW11 206 aa18.53■□□□□ 0.56
CPSF1-201ENST00000526271 SLC10A3P09131 477 aa18.52■□□□□ 0.56
CPSF1-201ENST00000526271 DGKZQ13574 1117 aa18.52■□□□□ 0.56
CPSF1-201ENST00000526271 RSBN1LQ6PCB5 846 aaPredicted RBP18.52■□□□□ 0.56
CPSF1-201ENST00000526271 MOB2Q70IA6 237 aa18.52■□□□□ 0.56
CPSF1-201ENST00000526271 CCDC191Q8NCU4 936 aa18.52■□□□□ 0.56
CPSF1-201ENST00000526271 CSRNP1Q96S65 589 aa18.52■□□□□ 0.56
CPSF1-201ENST00000526271 RNF186Q9NXI6 227 aa18.52■□□□□ 0.56
CPSF1-201ENST00000526271 PAPPA2Q9BXP8 1791 aa18.51■□□□□ 0.55
CPSF1-201ENST00000526271 PDE8AO60658 829 aa18.51■□□□□ 0.55
CPSF1-201ENST00000526271 GOLGA2Q08379 1002 aa18.51■□□□□ 0.55
CPSF1-201ENST00000526271 SCARF1Q14162 830 aa18.51■□□□□ 0.55
CPSF1-201ENST00000526271 ANGEL2Q5VTE6 544 aaKnown RBP18.51■□□□□ 0.55
CPSF1-201ENST00000526271 DCPSQ96C86 337 aaKnown RBP18.51■□□□□ 0.55
CPSF1-201ENST00000526271 ZC3H12CQ9C0D7 883 aaKnown RBP18.51■□□□□ 0.55
CPSF1-201ENST00000526271 GGA1Q9UJY5 639 aa18.51■□□□□ 0.55
CPSF1-201ENST00000526271 A0A1B0GUL6 1792 aa18.5■□□□□ 0.55
CPSF1-201ENST00000526271 MLLT1Q03111 559 aaPredicted RBP18.5■□□□□ 0.55
CPSF1-201ENST00000526271 G2E3Q7L622 706 aa18.5■□□□□ 0.55
CPSF1-201ENST00000526271 TXNRD3Q86VQ6 643 aa18.5■□□□□ 0.55
CPSF1-201ENST00000526271 RASAL3Q86YV0 1011 aa18.5■□□□□ 0.55
CPSF1-201ENST00000526271 CWC25Q9NXE8 425 aaPredicted RBP18.5■□□□□ 0.55
CPSF1-201ENST00000526271 ANKIB1Q9P2G1 1089 aa18.5■□□□□ 0.55
CPSF1-201ENST00000526271 ZNF157P51786 506 aaPredicted RBP18.49■□□□□ 0.55
CPSF1-201ENST00000526271 GNAI1P63096 354 aa18.49■□□□□ 0.55
CPSF1-201ENST00000526271 C2orf69Q8N8R5 385 aa18.49■□□□□ 0.55
CPSF1-201ENST00000526271 TTLL11Q8NHH1 800 aa18.49■□□□□ 0.55
CPSF1-201ENST00000526271 MAP3K2Q9Y2U5 619 aa18.49■□□□□ 0.55
CPSF1-201ENST00000526271 TRPA1O75762 1119 aa18.48■□□□□ 0.55
CPSF1-201ENST00000526271 KLRK1P26718 216 aa18.48■□□□□ 0.55
CPSF1-201ENST00000526271 CTSWP56202 376 aa18.48■□□□□ 0.55
CPSF1-201ENST00000526271 CWF19L2Q2TBE0 894 aaKnown RBP18.48■□□□□ 0.55
CPSF1-201ENST00000526271 CCDC152Q4G0S7 254 aa18.48■□□□□ 0.55
CPSF1-201ENST00000526271 PRAMEF18Q5VWM3 479 aa18.48■□□□□ 0.55
CPSF1-201ENST00000526271 AGBL3Q8NEM8 1001 aa18.48■□□□□ 0.55
CPSF1-201ENST00000526271 TSR2Q969E8 191 aaKnown RBP18.48■□□□□ 0.55
CPSF1-201ENST00000526271 GREM2Q9H772 168 aa18.48■□□□□ 0.55
CPSF1-201ENST00000526271 XDHP47989 1333 aa18.48■□□□□ 0.55
CPSF1-201ENST00000526271 NBPF9Q3BBW0 867 aa18.47■□□□□ 0.55
CPSF1-201ENST00000526271 CCDC102AQ96A19 550 aa18.47■□□□□ 0.55
CPSF1-201ENST00000526271 SAGE1Q9NXZ1 904 aa18.47■□□□□ 0.55
CPSF1-201ENST00000526271 MINPP1Q9UNW1 487 aa18.47■□□□□ 0.55
CPSF1-201ENST00000526271 PI4KAP2A4QPH2 592 aa18.46■□□□□ 0.55
CPSF1-201ENST00000526271 CASP7P55210 303 aa18.46■□□□□ 0.55
CPSF1-201ENST00000526271 DACT2Q5SW24 774 aa18.46■□□□□ 0.55
CPSF1-201ENST00000526271 SULF1Q8IWU6 871 aa18.46■□□□□ 0.55
CPSF1-201ENST00000526271 PI4KAP1Q8N8J0 262 aa18.46■□□□□ 0.55
CPSF1-201ENST00000526271 MYOZ2Q9NPC6 264 aa18.46■□□□□ 0.55
CPSF1-201ENST00000526271 HTTP42858 3142 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms