RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 AAMPQ13685 434 aa25.88■■□□□ 1.73
CD44-222ENST00000526025 OLFM4Q6UX06 510 aa25.88■■□□□ 1.73
CD44-222ENST00000526025 MPNDQ8N594 471 aa25.88■■□□□ 1.73
CD44-222ENST00000526025 CENPBP07199 599 aaPredicted RBP25.87■■□□□ 1.73
CD44-222ENST00000526025 ATP8B2P98198 1209 aa25.87■■□□□ 1.73
CD44-222ENST00000526025 PTPN12Q05209 780 aaKnown RBP25.87■■□□□ 1.73
CD44-222ENST00000526025 LDHAL6AQ6ZMR3 332 aa25.87■■□□□ 1.73
CD44-222ENST00000526025 VPS33BQ9H267 617 aa25.87■■□□□ 1.73
CD44-222ENST00000526025 COPRSQ9NQ92 184 aa25.87■■□□□ 1.73
CD44-222ENST00000526025 MINPP1Q9UNW1 487 aa25.87■■□□□ 1.73
CD44-222ENST00000526025 XDHP47989 1333 aa25.87■■□□□ 1.73
CD44-222ENST00000526025 DPP8Q6V1X1 898 aaPredicted RBP25.86■■□□□ 1.73
CD44-222ENST00000526025 RPAP2Q8IXW5 612 aaPredicted RBP25.86■■□□□ 1.73
CD44-222ENST00000526025 SUPT20HQ8NEM7 779 aa25.86■■□□□ 1.73
CD44-222ENST00000526025 SSH3Q8TE77 659 aa25.86■■□□□ 1.73
CD44-222ENST00000526025 ZNF594Q96JF6 807 aaPredicted RBP25.86■■□□□ 1.73
CD44-222ENST00000526025 ANKRD2Q9GZV1 360 aa25.86■■□□□ 1.73
CD44-222ENST00000526025 C1orf115Q9H7X2 142 aa25.86■■□□□ 1.73
CD44-222ENST00000526025 POLA2Q14181 598 aa25.85■■□□□ 1.73
CD44-222ENST00000526025 CEP85Q6P2H3 762 aa25.85■■□□□ 1.73
CD44-222ENST00000526025 CNNM1Q9NRU3 951 aa25.85■■□□□ 1.73
CD44-222ENST00000526025 CIAO1O76071 339 aa25.84■■□□□ 1.73
CD44-222ENST00000526025 GPSM2P81274 684 aa25.84■■□□□ 1.73
CD44-222ENST00000526025 SLC51AQ86UW1 340 aa25.84■■□□□ 1.73
CD44-222ENST00000526025 CRBNQ96SW2 442 aa25.84■■□□□ 1.73
CD44-222ENST00000526025 RIPOR2Q9Y4F9 1068 aa25.84■■□□□ 1.73
CD44-222ENST00000526025 PNMA6EA0A0J9YXQ4 647 aa25.83■■□□□ 1.73
CD44-222ENST00000526025 EYA2O00167 538 aa25.83■■□□□ 1.73
CD44-222ENST00000526025 LMNB1P20700 586 aa25.83■■□□□ 1.73
CD44-222ENST00000526025 NSFL1CQ9UNZ2 370 aaKnown RBP25.83■■□□□ 1.73
CD44-222ENST00000526025 MROH5Q6ZUA9 1318 aa25.83■■□□□ 1.73
CD44-222ENST00000526025 CHRNDQ07001 517 aa25.82■■□□□ 1.72
CD44-222ENST00000526025 ANKIB1Q9P2G1 1089 aa25.82■■□□□ 1.72
CD44-222ENST00000526025 TIAM2Q8IVF5 1701 aa25.81■■□□□ 1.72
CD44-222ENST00000526025 ATP2B4P23634 1241 aa25.81■■□□□ 1.72
CD44-222ENST00000526025 RASSF7Q02833 373 aa25.81■■□□□ 1.72
CD44-222ENST00000526025 KLHDC4Q8TBB5 520 aa25.81■■□□□ 1.72
CD44-222ENST00000526025 GGA1Q9UJY5 639 aa25.81■■□□□ 1.72
CD44-222ENST00000526025 LEMD3Q9Y2U8 911 aa25.81■■□□□ 1.72
CD44-222ENST00000526025 TBC1D16Q8TBP0 767 aa25.8■■□□□ 1.72
CD44-222ENST00000526025 PUS3Q9BZE2 481 aaKnown RBP25.8■■□□□ 1.72
CD44-222ENST00000526025 ZC3H4Q9UPT8 1303 aaKnown RBP25.8■■□□□ 1.72
CD44-222ENST00000526025 HMMRO75330 724 aa25.79■■□□□ 1.72
CD44-222ENST00000526025 IL15P40933 162 aaPredicted RBP25.79■■□□□ 1.72
CD44-222ENST00000526025 LRRC24Q50LG9 513 aa25.79■■□□□ 1.72
CD44-222ENST00000526025 EYA3Q99504 573 aa25.79■■□□□ 1.72
CD44-222ENST00000526025 POLLQ9UGP5 575 aa25.79■■□□□ 1.72
CD44-222ENST00000526025 IARSP41252 1262 aaKnown RBP25.78■■□□□ 1.72
CD44-222ENST00000526025 PRELPP51888 382 aa25.78■■□□□ 1.72
CD44-222ENST00000526025 ATG9AQ7Z3C6 839 aa25.78■■□□□ 1.72
CD44-222ENST00000526025 UFL1O94874 794 aa25.77■■□□□ 1.72
CD44-222ENST00000526025 KIAA2012Q0VF49 1180 aa25.77■■□□□ 1.72
CD44-222ENST00000526025 VGLL2Q8N8G2 317 aa25.77■■□□□ 1.72
CD44-222ENST00000526025 ZNF277Q9NRM2 450 aaPredicted RBP25.77■■□□□ 1.72
CD44-222ENST00000526025 PA2G4Q9UQ80 394 aaKnown RBP25.77■■□□□ 1.72
CD44-222ENST00000526025 NOP58Q9Y2X3 529 aaKnown RBP25.77■■□□□ 1.72
CD44-222ENST00000526025 MED23Q9ULK4 1368 aa25.77■■□□□ 1.72
CD44-222ENST00000526025 ZNF804BA4D1E1 1349 aa25.75■■□□□ 1.71
CD44-222ENST00000526025 C6orf229H3BNL8 230 aa25.75■■□□□ 1.71
CD44-222ENST00000526025 METTL24Q5JXM2 366 aa25.75■■□□□ 1.71
CD44-222ENST00000526025 C9orf131Q5VYM1 1079 aa25.75■■□□□ 1.71
CD44-222ENST00000526025 C15orf52Q6ZUT6 534 aaKnown RBP25.75■■□□□ 1.71
CD44-222ENST00000526025 SIRT2Q8IXJ6 389 aa25.75■■□□□ 1.71
CD44-222ENST00000526025 RNF181Q9P0P0 153 aa25.75■■□□□ 1.71
CD44-222ENST00000526025 PDE8BO95263 885 aa25.74■■□□□ 1.71
CD44-222ENST00000526025 UBE4AQ14139 1066 aa25.74■■□□□ 1.71
CD44-222ENST00000526025 WASHC4Q2M389 1173 aa25.74■■□□□ 1.71
CD44-222ENST00000526025 SIL1Q9H173 461 aa25.74■■□□□ 1.71
CD44-222ENST00000526025 PPIP5K2O43314 1243 aa25.73■■□□□ 1.71
CD44-222ENST00000526025 ARAP2Q8WZ64 1704 aa25.73■■□□□ 1.71
CD44-222ENST00000526025 COL4A5P29400 1685 aa25.73■■□□□ 1.71
CD44-222ENST00000526025 TAF5LO75529 589 aa25.72■■□□□ 1.71
CD44-222ENST00000526025 KCNJ4P48050 445 aa25.72■■□□□ 1.71
CD44-222ENST00000526025 G3BP1Q13283 466 aaKnown RBP eCLIP25.72■■□□□ 1.71
CD44-222ENST00000526025 HSP90AB4PQ58FF6 505 aa25.72■■□□□ 1.71
CD44-222ENST00000526025 LARGE2Q8N3Y3 721 aa25.72■■□□□ 1.71
CD44-222ENST00000526025 HELBQ8NG08 1087 aaPredicted RBP25.72■■□□□ 1.71
CD44-222ENST00000526025 EXOC6Q8TAG9 804 aa25.72■■□□□ 1.71
CD44-222ENST00000526025 CEP126Q9P2H0 1117 aa25.72■■□□□ 1.71
CD44-222ENST00000526025 PSME4Q14997 1843 aa25.72■■□□□ 1.71
CD44-222ENST00000526025 IRS2Q9Y4H2 1338 aa25.71■■□□□ 1.71
CD44-222ENST00000526025 PUM3Q15397 648 aaKnown RBP25.71■■□□□ 1.71
CD44-222ENST00000526025 AOC3Q16853 763 aa25.71■■□□□ 1.71
CD44-222ENST00000526025 JDP2Q8WYK2 163 aa25.71■■□□□ 1.71
CD44-222ENST00000526025 ZC3H12CQ9C0D7 883 aaKnown RBP25.71■■□□□ 1.71
CD44-222ENST00000526025 SURF6O75683 361 aaKnown RBP25.7■■□□□ 1.7
CD44-222ENST00000526025 PCDHB15Q9Y5E8 787 aa25.7■■□□□ 1.7
CD44-222ENST00000526025 FGFR2P21802 821 aa25.69■■□□□ 1.7
CD44-222ENST00000526025 ERC1Q8IUD2 1116 aa25.69■■□□□ 1.7
CD44-222ENST00000526025 NIM1KQ8IY84 436 aa25.69■■□□□ 1.7
CD44-222ENST00000526025 FZD9O00144 591 aa25.67■■□□□ 1.7
CD44-222ENST00000526025 LPIN2Q92539 896 aa25.67■■□□□ 1.7
CD44-222ENST00000526025 GPR108Q9NPR9 543 aa25.67■■□□□ 1.7
CD44-222ENST00000526025 AKAP2Q9Y2D5 859 aa25.67■■□□□ 1.7
CD44-222ENST00000526025 WTIPA6NIX2 430 aaPredicted RBP25.66■■□□□ 1.7
CD44-222ENST00000526025 GPR101Q96P66 508 aaPredicted RBP25.66■■□□□ 1.7
CD44-222ENST00000526025 COA1Q9GZY4 146 aa25.66■■□□□ 1.7
CD44-222ENST00000526025 ZNRF3Q9ULT6 936 aa25.66■■□□□ 1.7
CD44-222ENST00000526025 RIMBP2O15034 1052 aa25.65■■□□□ 1.7
CD44-222ENST00000526025 RAB11FIP3O75154 756 aa25.65■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms