RNA–Protein interactions for RNA: ENST00000524652.1

CSDE1-208, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-208ENST00000524652 DCAF11Q8TEB1 546 aa5.87□□□□□ -1.47
CSDE1-208ENST00000524652 NSUN5Q96P11 429 aaKnown RBP5.87□□□□□ -1.47
CSDE1-208ENST00000524652 SSBP4Q9BWG4 385 aaPredicted RBP5.87□□□□□ -1.47
CSDE1-208ENST00000524652 STIM2Q9P246 746 aa5.87□□□□□ -1.47
CSDE1-208ENST00000524652 FNDC3AQ9Y2H6 1198 aaKnown RBP5.87□□□□□ -1.47
CSDE1-208ENST00000524652 UBAP1LF5GYI3 381 aa5.86□□□□□ -1.47
CSDE1-208ENST00000524652 J3QW42 95 aa5.86□□□□□ -1.47
CSDE1-208ENST00000524652 NAA30Q147X3 362 aaPredicted RBP5.86□□□□□ -1.47
CSDE1-208ENST00000524652 OR13H1Q8NG92 308 aa5.86□□□□□ -1.47
CSDE1-208ENST00000524652 DLL1O00548 723 aa5.85□□□□□ -1.47
CSDE1-208ENST00000524652 DEAF1O75398 565 aaPredicted RBP5.85□□□□□ -1.47
CSDE1-208ENST00000524652 ATP2B4P23634 1241 aa5.85□□□□□ -1.47
CSDE1-208ENST00000524652 PRSS36Q5K4E3 855 aa5.85□□□□□ -1.47
CSDE1-208ENST00000524652 MAP4K3Q8IVH8 894 aa5.85□□□□□ -1.47
CSDE1-208ENST00000524652 GDF6Q6KF10 455 aaPredicted RBP5.84□□□□□ -1.47
CSDE1-208ENST00000524652 WFDC12Q8WWY7 111 aa5.84□□□□□ -1.47
CSDE1-208ENST00000524652 TP53INP1Q96A56 240 aa5.84□□□□□ -1.47
CSDE1-208ENST00000524652 MUC3BQ9H195 1237 aa5.84□□□□□ -1.47
CSDE1-208ENST00000524652 SLAIN2Q9P270 581 aa5.84□□□□□ -1.47
CSDE1-208ENST00000524652 KIF4AO95239 1232 aa5.83□□□□□ -1.48
CSDE1-208ENST00000524652 NOS3P29474 1203 aa5.83□□□□□ -1.48
CSDE1-208ENST00000524652 HYAL2Q12891 473 aa5.83□□□□□ -1.48
CSDE1-208ENST00000524652 PDE12Q6L8Q7 609 aaKnown RBP5.83□□□□□ -1.48
CSDE1-208ENST00000524652 IL22RA1Q8N6P7 574 aa5.83□□□□□ -1.48
CSDE1-208ENST00000524652 GPR152Q8TDT2 470 aa5.83□□□□□ -1.48
CSDE1-208ENST00000524652 SPACA7Q96KW9 195 aa5.83□□□□□ -1.48
CSDE1-208ENST00000524652 MRPL18Q9H0U6 180 aaKnown RBP5.83□□□□□ -1.48
CSDE1-208ENST00000524652 ABI2Q9NYB9 513 aaPredicted RBP5.83□□□□□ -1.48
CSDE1-208ENST00000524652 ZBTB39O15060 712 aa5.82□□□□□ -1.48
CSDE1-208ENST00000524652 RPLP1P05386 114 aaKnown RBP5.82□□□□□ -1.48
CSDE1-208ENST00000524652 IREB2P48200 963 aaKnown RBP5.82□□□□□ -1.48
CSDE1-208ENST00000524652 SETDB1Q15047 1291 aa5.82□□□□□ -1.48
CSDE1-208ENST00000524652 FOXD4L6Q3SYB3 417 aaPredicted RBP5.82□□□□□ -1.48
CSDE1-208ENST00000524652 TTC39BQ5VTQ0 682 aaPredicted RBP5.82□□□□□ -1.48
CSDE1-208ENST00000524652 FOXD4L3Q6VB84 417 aaPredicted RBP5.82□□□□□ -1.48
CSDE1-208ENST00000524652 TMEM130Q8N3G9 435 aa5.82□□□□□ -1.48
CSDE1-208ENST00000524652 HELQQ8TDG4 1101 aa5.82□□□□□ -1.48
CSDE1-208ENST00000524652 TRIM33Q9UPN9 1127 aa5.82□□□□□ -1.48
CSDE1-208ENST00000524652 SCO2A0A1W2PP80 73 aa5.81□□□□□ -1.48
CSDE1-208ENST00000524652 ARID3CA6NKF2 412 aa5.81□□□□□ -1.48
CSDE1-208ENST00000524652 SMNDC1O75940 238 aaKnown RBP eCLIP5.81□□□□□ -1.48
CSDE1-208ENST00000524652 SCNN1AP37088 669 aa5.81□□□□□ -1.48
CSDE1-208ENST00000524652 COL13A1Q5TAT6 717 aaPredicted RBP5.81□□□□□ -1.48
CSDE1-208ENST00000524652 DZIP1LQ8IYY4 767 aaKnown RBP5.81□□□□□ -1.48
CSDE1-208ENST00000524652 AKTIPQ9H8T0 292 aa5.81□□□□□ -1.48
CSDE1-208ENST00000524652 SEPT3Q9UH03 358 aa5.81□□□□□ -1.48
CSDE1-208ENST00000524652 PPME1Q9Y570 386 aa5.81□□□□□ -1.48
CSDE1-208ENST00000524652 ZCCHC6Q5VYS8 1495 aaKnown RBP5.81□□□□□ -1.48
CSDE1-208ENST00000524652 PPP1R15AO75807 674 aaPredicted RBP5.8□□□□□ -1.48
CSDE1-208ENST00000524652 NUDT16Q96DE0 195 aaKnown RBP5.8□□□□□ -1.48
CSDE1-208ENST00000524652 MEGF10Q96KG7 1140 aa5.8□□□□□ -1.48
CSDE1-208ENST00000524652 GTF3C3Q9Y5Q9 886 aa5.8□□□□□ -1.48
CSDE1-208ENST00000524652 F8W735 103 aaPredicted RBP5.79□□□□□ -1.48
CSDE1-208ENST00000524652 ATP11AP98196 1134 aa5.79□□□□□ -1.48
CSDE1-208ENST00000524652 ARTNQ5T4W7 220 aa5.79□□□□□ -1.48
CSDE1-208ENST00000524652 XKR5Q6UX68 686 aa5.79□□□□□ -1.48
CSDE1-208ENST00000524652 Q6ZS46 218 aa5.79□□□□□ -1.48
CSDE1-208ENST00000524652 ZNF438Q7Z4V0 828 aa5.79□□□□□ -1.48
CSDE1-208ENST00000524652 CCDC82Q8N4S0 544 aa5.79□□□□□ -1.48
CSDE1-208ENST00000524652 ELP3Q9H9T3 547 aa5.79□□□□□ -1.48
CSDE1-208ENST00000524652 TMEM88BA6NKF7 163 aa5.78□□□□□ -1.48
CSDE1-208ENST00000524652 PCSK2P16519 638 aa5.78□□□□□ -1.48
CSDE1-208ENST00000524652 CEP135Q66GS9 1140 aa5.78□□□□□ -1.48
CSDE1-208ENST00000524652 PRR23CQ6ZRP0 262 aa5.78□□□□□ -1.48
CSDE1-208ENST00000524652 ATCAYQ86WG3 371 aa5.78□□□□□ -1.48
CSDE1-208ENST00000524652 NCAPG2Q86XI2 1143 aa5.78□□□□□ -1.48
CSDE1-208ENST00000524652 PBX4Q9BYU1 374 aa5.78□□□□□ -1.48
CSDE1-208ENST00000524652 RASSF4Q9H2L5 321 aa5.78□□□□□ -1.48
CSDE1-208ENST00000524652 ZFP64Q9NPA5 681 aa5.78□□□□□ -1.48
CSDE1-208ENST00000524652 TMEM63CQ9P1W3 806 aa5.78□□□□□ -1.48
CSDE1-208ENST00000524652 CYP2E1P05181 493 aaPredicted RBP5.77□□□□□ -1.49
CSDE1-208ENST00000524652 SSFA2P28290 1259 aa5.77□□□□□ -1.49
CSDE1-208ENST00000524652 CDC27P30260 824 aa5.77□□□□□ -1.49
CSDE1-208ENST00000524652 LRP8Q14114 963 aa5.77□□□□□ -1.49
CSDE1-208ENST00000524652 NOM1Q5C9Z4 860 aaKnown RBP5.77□□□□□ -1.49
CSDE1-208ENST00000524652 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.77□□□□□ -1.49
CSDE1-208ENST00000524652 SLC51AQ86UW1 340 aa5.77□□□□□ -1.49
CSDE1-208ENST00000524652 CEP120Q8N960 986 aa5.77□□□□□ -1.49
CSDE1-208ENST00000524652 GALNT11Q8NCW6 608 aa5.77□□□□□ -1.49
CSDE1-208ENST00000524652 EDEM1Q92611 657 aa5.77□□□□□ -1.49
CSDE1-208ENST00000524652 LACRTQ9GZZ8 138 aa5.77□□□□□ -1.49
CSDE1-208ENST00000524652 FAM177BA6PVY3 158 aa5.76□□□□□ -1.49
CSDE1-208ENST00000524652 LINC01387J3KSC0 135 aa5.76□□□□□ -1.49
CSDE1-208ENST00000524652 PDGFAP04085 211 aa5.76□□□□□ -1.49
CSDE1-208ENST00000524652 PTPRAP18433 802 aa5.76□□□□□ -1.49
CSDE1-208ENST00000524652 MZF1P28698 734 aaPredicted RBP5.76□□□□□ -1.49
CSDE1-208ENST00000524652 CD68P34810 354 aaPredicted RBP5.76□□□□□ -1.49
CSDE1-208ENST00000524652 EIF1AXP47813 144 aaKnown RBP5.76□□□□□ -1.49
CSDE1-208ENST00000524652 DNM1Q05193 864 aaKnown RBP5.76□□□□□ -1.49
CSDE1-208ENST00000524652 ALKBH2Q6NS38 261 aa5.76□□□□□ -1.49
CSDE1-208ENST00000524652 FAM117BQ6P1L5 589 aa5.76□□□□□ -1.49
CSDE1-208ENST00000524652 KLHL23Q8NBE8 558 aa5.76□□□□□ -1.49
CSDE1-208ENST00000524652 SALL4Q9UJQ4 1053 aa5.76□□□□□ -1.49
CSDE1-208ENST00000524652 TM4SF5O14894 197 aa5.75□□□□□ -1.49
CSDE1-208ENST00000524652 ALX3O95076 343 aa5.75□□□□□ -1.49
CSDE1-208ENST00000524652 EPHA1P21709 976 aa5.75□□□□□ -1.49
CSDE1-208ENST00000524652 MPSTP25325 297 aa5.75□□□□□ -1.49
CSDE1-208ENST00000524652 TTC16Q8NEE8 873 aa5.75□□□□□ -1.49
CSDE1-208ENST00000524652 GTF3C2Q8WUA4 911 aaPredicted RBP5.75□□□□□ -1.49
CSDE1-208ENST00000524652 PMEPA1Q969W9 287 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms