RNA–Protein interactions for RNA: ENST00000524006.5

SPIDR-222, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 970 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-222	ENST00000524006	SSFA2	P28290	1259 aa		12.91	□□□□□ -0.34
SPIDR-222	ENST00000524006	IL6ST	P40189	918 aa	Predicted RBP	12.91	□□□□□ -0.34
SPIDR-222	ENST00000524006	TRIM28	Q13263	835 aa	Known RBP	12.91	□□□□□ -0.34
SPIDR-222	ENST00000524006	ZNF827	Q17R98	1081 aa		12.91	□□□□□ -0.34
SPIDR-222	ENST00000524006	TTC39A	Q5SRH9	613 aa		12.91	□□□□□ -0.34
SPIDR-222	ENST00000524006	PRPF40B	Q6NWY9	871 aa	Known RBP	12.91	□□□□□ -0.34
SPIDR-222	ENST00000524006	TMX3	Q96JJ7	454 aa		12.91	□□□□□ -0.34
SPIDR-222	ENST00000524006	JAKMIP1	Q96N16	626 aa	Known RBP	12.91	□□□□□ -0.34
SPIDR-222	ENST00000524006	DBNDD2	Q9BQY9	259 aa		12.91	□□□□□ -0.34
SPIDR-222	ENST00000524006	LRRC4B	Q9NT99	713 aa		12.91	□□□□□ -0.34
SPIDR-222	ENST00000524006	CCDC87	Q9NVE4	849 aa		12.91	□□□□□ -0.34
SPIDR-222	ENST00000524006	HMG20B	Q9P0W2	317 aa		12.91	□□□□□ -0.34
SPIDR-222	ENST00000524006	DBNL	Q9UJU6	430 aa	Known RBP	12.91	□□□□□ -0.34
SPIDR-222	ENST00000524006	SNX14	Q9Y5W7	946 aa		12.91	□□□□□ -0.34
SPIDR-222	ENST00000524006	CYP46A1	Q9Y6A2	500 aa		12.91	□□□□□ -0.34
SPIDR-222	ENST00000524006	TCHH	Q07283	1943 aa		12.9	□□□□□ -0.34
SPIDR-222	ENST00000524006		A0A1B0GUL6	1792 aa		12.9	□□□□□ -0.34
SPIDR-222	ENST00000524006	ANKRD18B	A2A2Z9	1011 aa		12.9	□□□□□ -0.34
SPIDR-222	ENST00000524006	TRAK2	O60296	914 aa		12.9	□□□□□ -0.34
SPIDR-222	ENST00000524006	CCDC158	Q5M9N0	1113 aa		12.9	□□□□□ -0.34
SPIDR-222	ENST00000524006	IL17RA	Q96F46	866 aa		12.9	□□□□□ -0.34
SPIDR-222	ENST00000524006	INTS4	Q96HW7	963 aa	Known RBP	12.9	□□□□□ -0.34
SPIDR-222	ENST00000524006	HAUS7	Q99871	368 aa		12.9	□□□□□ -0.34
SPIDR-222	ENST00000524006	TRMT112	Q9UI30	125 aa	Known RBP	12.9	□□□□□ -0.34
SPIDR-222	ENST00000524006	ZNF652	Q9Y2D9	606 aa		12.9	□□□□□ -0.34
SPIDR-222	ENST00000524006	ZBTB1	Q9Y2K1	713 aa		12.9	□□□□□ -0.34
SPIDR-222	ENST00000524006	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	12.9	□□□□□ -0.34
SPIDR-222	ENST00000524006	RBM8A	Q9Y5S9	174 aa	Known RBP	12.9	□□□□□ -0.34
SPIDR-222	ENST00000524006	PALLD	Q8WX93	1383 aa		12.9	□□□□□ -0.34
SPIDR-222	ENST00000524006	MED23	Q9ULK4	1368 aa		12.9	□□□□□ -0.34
SPIDR-222	ENST00000524006	ERVV-1	B6SEH8	477 aa		12.89	□□□□□ -0.35
SPIDR-222	ENST00000524006	IFIT1	P09914	478 aa	Known RBP	12.89	□□□□□ -0.35
SPIDR-222	ENST00000524006	ATP6V1A	P38606	617 aa		12.89	□□□□□ -0.35
SPIDR-222	ENST00000524006	KRT32	Q14532	448 aa		12.89	□□□□□ -0.35
SPIDR-222	ENST00000524006	METTL24	Q5JXM2	366 aa		12.89	□□□□□ -0.35
SPIDR-222	ENST00000524006	PLA2G12B	Q9BX93	195 aa		12.89	□□□□□ -0.35
SPIDR-222	ENST00000524006	RNF39	Q9H2S5	420 aa		12.89	□□□□□ -0.35
SPIDR-222	ENST00000524006	CNNM1	Q9NRU3	951 aa		12.89	□□□□□ -0.35
SPIDR-222	ENST00000524006	PDRG1	Q9NUG6	133 aa		12.89	□□□□□ -0.35
SPIDR-222	ENST00000524006	MYH15	Q9Y2K3	1946 aa		12.89	□□□□□ -0.35
SPIDR-222	ENST00000524006	MYO5A	Q9Y4I1	1855 aa	Known RBP	12.89	□□□□□ -0.35
SPIDR-222	ENST00000524006	TAF1L	Q8IZX4	1826 aa		12.88	□□□□□ -0.35
SPIDR-222	ENST00000524006		A0A0D9SFI3	127 aa		12.88	□□□□□ -0.35
SPIDR-222	ENST00000524006	CTSW	P56202	376 aa		12.88	□□□□□ -0.35
SPIDR-222	ENST00000524006	ANKRD1	Q15327	319 aa		12.88	□□□□□ -0.35
SPIDR-222	ENST00000524006	NLRP10	Q86W26	655 aa		12.88	□□□□□ -0.35
SPIDR-222	ENST00000524006	TICAM2	Q86XR7	235 aa		12.88	□□□□□ -0.35
SPIDR-222	ENST00000524006	ZNF784	Q8NCA9	323 aa	Predicted RBP	12.88	□□□□□ -0.35
SPIDR-222	ENST00000524006	FAM89A	Q96GI7	184 aa		12.88	□□□□□ -0.35
SPIDR-222	ENST00000524006	ZSCAN31	Q96LW9	406 aa	Predicted RBP	12.88	□□□□□ -0.35
SPIDR-222	ENST00000524006	FAM227B	Q96M60	508 aa		12.88	□□□□□ -0.35
SPIDR-222	ENST00000524006	PAG1	Q9NWQ8	432 aa		12.88	□□□□□ -0.35
SPIDR-222	ENST00000524006		U3KPZ7	1027 aa	Predicted RBP	12.88	□□□□□ -0.35
SPIDR-222	ENST00000524006	ABCC12	Q96J65	1359 aa		12.88	□□□□□ -0.35
SPIDR-222	ENST00000524006	DOCK2	Q92608	1830 aa		12.88	□□□□□ -0.35
SPIDR-222	ENST00000524006		A0A1B0GUL7	405 aa		12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	GOLIM4	O00461	696 aa		12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	IRS4	O14654	1257 aa	Predicted RBP	12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	PDE8A	O60658	829 aa		12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	CREB3L3	Q68CJ9	461 aa		12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	BLOC1S2	Q6QNY1	142 aa		12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	DDX46	Q7L014	1031 aa	Known RBP	12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	AKT1S1	Q96B36	256 aa		12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	ZNF594	Q96JF6	807 aa	Predicted RBP	12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	CCDC85A	Q96PX6	553 aa	Predicted RBP	12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	TM6SF1	Q9BZW5	370 aa		12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	IL25	Q9H293	177 aa		12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	SH2B1	Q9NRF2	756 aa	Predicted RBP	12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	LIMCH1	Q9UPQ0	1083 aa		12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	AKAP11	Q9UKA4	1901 aa		12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	SH3TC1	Q8TE82	1336 aa		12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	WDR33	Q9C0J8	1336 aa	Known RBP	12.87	□□□□□ -0.35
SPIDR-222	ENST00000524006	CEP350	Q5VT06	3117 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	LOC102724428	A0A0B4J2F2	783 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	GOLGA6L3	A6NEY3	463 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	BAG4	O95429	457 aa	Known RBP	12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	NCL	P19338	710 aa	Known RBP	12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	CRKL	P46109	303 aa	Known RBP	12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	SIK1	P57059	783 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	PTH1R	Q03431	593 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	CUL4A	Q13619	759 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	ATP2B3	Q16720	1220 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	MCMDC2	Q4G0Z9	681 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	PARP10	Q53GL7	1025 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	VPS53	Q5VIR6	699 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	MCTP1	Q6DN14	999 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	ATG9A	Q7Z3C6	839 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	ZGPAT	Q8N5A5	531 aa	Known RBP	12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	KBTBD3	Q8NAB2	608 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	AK7	Q96M32	723 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	GZF1	Q9H116	711 aa	Predicted RBP	12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	TBC1D2B	Q9UPU7	963 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	SMC3	Q9UQE7	1217 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	RIC1	Q4ADV7	1423 aa		12.86	□□□□□ -0.35
SPIDR-222	ENST00000524006	AK2	P54819	239 aa		12.85	□□□□□ -0.35
SPIDR-222	ENST00000524006	FGD1	P98174	961 aa		12.85	□□□□□ -0.35
SPIDR-222	ENST00000524006	HLF	Q16534	295 aa		12.85	□□□□□ -0.35
SPIDR-222	ENST00000524006	LRRC24	Q50LG9	513 aa		12.85	□□□□□ -0.35
SPIDR-222	ENST00000524006	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	12.85	□□□□□ -0.35	1e-6	■■■■□ 20.4

Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms