RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 PDE3AQ14432 1141 aa9.71□□□□□ -0.86
LIMCH1-222ENST00000515847 INTS3Q68E01 1043 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-222ENST00000515847 CC2D2BQ6DHV5 1058 aa9.71□□□□□ -0.86
LIMCH1-222ENST00000515847 ARHGAP27Q6ZUM4 889 aa9.71□□□□□ -0.86
LIMCH1-222ENST00000515847 SLC51AQ86UW1 340 aa9.71□□□□□ -0.86
LIMCH1-222ENST00000515847 ITPRIPQ8IWB1 547 aa9.71□□□□□ -0.86
LIMCH1-222ENST00000515847 PLA2G12BQ9BX93 195 aa9.71□□□□□ -0.86
LIMCH1-222ENST00000515847 DDX19BQ9UMR2 479 aa9.71□□□□□ -0.86
LIMCH1-222ENST00000515847 FER1L6Q2WGJ9 1857 aa9.7□□□□□ -0.86
LIMCH1-222ENST00000515847 RASSF7Q02833 373 aa9.7□□□□□ -0.86
LIMCH1-222ENST00000515847 SF3B3Q15393 1217 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-222ENST00000515847 OLFM4Q6UX06 510 aa9.7□□□□□ -0.86
LIMCH1-222ENST00000515847 C7orf43Q8WVR3 580 aa9.7□□□□□ -0.86
LIMCH1-222ENST00000515847 CRAMP1Q96RY5 1269 aa9.7□□□□□ -0.86
LIMCH1-222ENST00000515847 PLSCR2Q9NRY7 297 aa9.7□□□□□ -0.86
LIMCH1-222ENST00000515847 RTL9Q8NET4 1388 aa9.7□□□□□ -0.86
LIMCH1-222ENST00000515847 NFKBIEO00221 500 aa9.69□□□□□ -0.86
LIMCH1-222ENST00000515847 UTYO14607 1347 aa9.69□□□□□ -0.86
LIMCH1-222ENST00000515847 PPEF1O14829 653 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-222ENST00000515847 SBF1O95248 1867 aa9.69□□□□□ -0.86
LIMCH1-222ENST00000515847 IGHMBP2P38935 993 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-222ENST00000515847 RRP1P56182 461 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-222ENST00000515847 GRAPQ13588 217 aa9.69□□□□□ -0.86
LIMCH1-222ENST00000515847 AAMPQ13685 434 aa9.69□□□□□ -0.86
LIMCH1-222ENST00000515847 TAF7LQ5H9L4 462 aa9.69□□□□□ -0.86
LIMCH1-222ENST00000515847 MAMSTRQ6ZN01 415 aa9.69□□□□□ -0.86
LIMCH1-222ENST00000515847 GRAPLQ8TC17 118 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-222ENST00000515847 CCDC85AQ96PX6 553 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-222ENST00000515847 TNNQ9UQP3 1299 aa9.69□□□□□ -0.86
LIMCH1-222ENST00000515847 SPEF2Q9C093 1822 aa9.68□□□□□ -0.86
LIMCH1-222ENST00000515847 LRRC37AA6NMS7 1700 aa9.68□□□□□ -0.86
LIMCH1-222ENST00000515847 SNED1Q8TER0 1413 aa9.68□□□□□ -0.86
LIMCH1-222ENST00000515847 BBOX1O75936 387 aa9.68□□□□□ -0.86
LIMCH1-222ENST00000515847 GNAI2P04899 355 aa9.68□□□□□ -0.86
LIMCH1-222ENST00000515847 MVPQ14764 893 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-222ENST00000515847 CCDC57Q2TAC2 916 aa9.68□□□□□ -0.86
LIMCH1-222ENST00000515847 CCDC93Q567U6 631 aa9.68□□□□□ -0.86
LIMCH1-222ENST00000515847 ANKRD18AQ8IVF6 992 aa9.68□□□□□ -0.86
LIMCH1-222ENST00000515847 CELF1Q92879 486 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-222ENST00000515847 CLUAP1Q96AJ1 413 aa9.68□□□□□ -0.86
LIMCH1-222ENST00000515847 SEC31BQ9NQW1 1179 aa9.68□□□□□ -0.86
LIMCH1-222ENST00000515847 CHMP3Q9Y3E7 222 aa9.68□□□□□ -0.86
LIMCH1-222ENST00000515847 ANKRD18BA2A2Z9 1011 aa9.67□□□□□ -0.86
LIMCH1-222ENST00000515847 PYGBP11216 843 aa9.67□□□□□ -0.86
LIMCH1-222ENST00000515847 YY1P25490 414 aa9.67□□□□□ -0.86
LIMCH1-222ENST00000515847 PRELPP51888 382 aa9.67□□□□□ -0.86
LIMCH1-222ENST00000515847 IFIT5Q13325 482 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-222ENST00000515847 FAM161AQ3B820 660 aa9.67□□□□□ -0.86
LIMCH1-222ENST00000515847 RTKN2Q8IZC4 609 aa9.67□□□□□ -0.86
LIMCH1-222ENST00000515847 SUPT20HQ8NEM7 779 aa9.67□□□□□ -0.86
LIMCH1-222ENST00000515847 TTLL11Q8NHH1 800 aa9.67□□□□□ -0.86
LIMCH1-222ENST00000515847 MPHOSPH8Q99549 860 aa9.67□□□□□ -0.86
LIMCH1-222ENST00000515847 TAOK3Q9H2K8 898 aa9.67□□□□□ -0.86
LIMCH1-222ENST00000515847 GREM2Q9H772 168 aa9.67□□□□□ -0.86
LIMCH1-222ENST00000515847 CCDC88AQ3V6T2 1871 aa9.67□□□□□ -0.86
LIMCH1-222ENST00000515847 TIAM2Q8IVF5 1701 aa9.67□□□□□ -0.86
LIMCH1-222ENST00000515847 LTBP3Q9NS15 1303 aa9.66□□□□□ -0.86
LIMCH1-222ENST00000515847 HMMRO75330 724 aa9.66□□□□□ -0.86
LIMCH1-222ENST00000515847 NBPF7P0C2Y1 421 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-222ENST00000515847 FOXO4P98177 505 aa9.66□□□□□ -0.86
LIMCH1-222ENST00000515847 EPHA10Q5JZY3 1008 aa9.66□□□□□ -0.86
LIMCH1-222ENST00000515847 C9orf131Q5VYM1 1079 aa9.66□□□□□ -0.86
LIMCH1-222ENST00000515847 TMEM57Q8N5G2 664 aa9.66□□□□□ -0.86
LIMCH1-222ENST00000515847 SUCLG2Q96I99 432 aa9.66□□□□□ -0.86
LIMCH1-222ENST00000515847 COLQQ9Y215 455 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-222ENST00000515847 ATP6V0A2Q9Y487 856 aa9.66□□□□□ -0.86
LIMCH1-222ENST00000515847 DICER1Q9UPY3 1922 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-222ENST00000515847 SEC24BO95487 1268 aa9.65□□□□□ -0.86
LIMCH1-222ENST00000515847 CSF1RP07333 972 aa9.65□□□□□ -0.86
LIMCH1-222ENST00000515847 RPS8P62241 208 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-222ENST00000515847 FKBP4Q02790 459 aaKnown RBP eCLIP9.65□□□□□ -0.86
LIMCH1-222ENST00000515847 KAZALD1Q96I82 304 aa9.65□□□□□ -0.86
LIMCH1-222ENST00000515847 TMEM106CQ9BVX2 250 aa9.65□□□□□ -0.86
LIMCH1-222ENST00000515847 USP44Q9H0E7 712 aa9.65□□□□□ -0.86
LIMCH1-222ENST00000515847 RNF181Q9P0P0 153 aa9.65□□□□□ -0.86
LIMCH1-222ENST00000515847 DUOX1Q9NRD9 1551 aa9.65□□□□□ -0.86
LIMCH1-222ENST00000515847 LTBP1Q14766 1721 aa9.65□□□□□ -0.87
LIMCH1-222ENST00000515847 ZC3H4Q9UPT8 1303 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 NEFLP07196 543 aa9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 RLBP1P12271 317 aa9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 LMNB1P20700 586 aa9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 ITGA6P23229 1130 aa9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 RABL6Q3YEC7 729 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 IER5LQ5T953 404 aa9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 LMBR1LQ6UX01 489 aa9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 SP8Q8IXZ3 490 aa9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 ANKRD44Q8N8A2 993 aa9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 EYA3Q99504 573 aa9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 MEIS3Q99687 375 aa9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 ANKRD2Q9GZV1 360 aa9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 VPS33BQ9H267 617 aa9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 BICC1Q9H694 974 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 SCUBE2Q9NQ36 999 aa9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 ZNF277Q9NRM2 450 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-222ENST00000515847 MTX1Q13505 466 aa9.63□□□□□ -0.87
LIMCH1-222ENST00000515847 HSP90AB4PQ58FF6 505 aa9.63□□□□□ -0.87
LIMCH1-222ENST00000515847 PSMD1Q99460 953 aa9.63□□□□□ -0.87
LIMCH1-222ENST00000515847 CNNM1Q9NRU3 951 aa9.63□□□□□ -0.87
LIMCH1-222ENST00000515847 BSDC1Q9NW68 430 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-222ENST00000515847 LRRFIP2Q9Y608 721 aaKnown RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms