RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 GSPT1P15170 499 aaKnown RBP14.6□□□□□ -0.07
USP53-209ENST00000514665 UBA5Q9GZZ9 404 aa14.6□□□□□ -0.07
USP53-209ENST00000514665 SNX14Q9Y5W7 946 aa14.6□□□□□ -0.07
USP53-209ENST00000514665 N4BP3O15049 544 aa14.59□□□□□ -0.07
USP53-209ENST00000514665 RNMTO43148 476 aaKnown RBP14.59□□□□□ -0.07
USP53-209ENST00000514665 CHAMP1Q96JM3 812 aa14.59□□□□□ -0.07
USP53-209ENST00000514665 CDC5LQ99459 802 aaKnown RBP14.59□□□□□ -0.07
USP53-209ENST00000514665 RNF216Q9NWF9 866 aaPredicted RBP14.59□□□□□ -0.07
USP53-209ENST00000514665 CYP7A1P22680 504 aa14.59□□□□□ -0.07
USP53-209ENST00000514665 MTIF2P46199 727 aaKnown RBP14.59□□□□□ -0.07
USP53-209ENST00000514665 TAF4BQ92750 862 aa14.59□□□□□ -0.07
USP53-209ENST00000514665 DBNDD2Q9BQY9 259 aa14.59□□□□□ -0.07
USP53-209ENST00000514665 FBXO3Q9UK99 471 aa14.59□□□□□ -0.07
USP53-209ENST00000514665 UQCRFS1P1P0C7P4 283 aa14.59□□□□□ -0.07
USP53-209ENST00000514665 TDRD12Q587J7 1177 aaKnown RBP14.59□□□□□ -0.07
USP53-209ENST00000514665 TXLNBQ8N3L3 684 aa14.59□□□□□ -0.07
USP53-209ENST00000514665 CCDC12Q8WUD4 166 aaPredicted RBP14.59□□□□□ -0.07
USP53-209ENST00000514665 IP6K1Q92551 441 aa14.59□□□□□ -0.07
USP53-209ENST00000514665 ERLIN2O94905 339 aa14.58□□□□□ -0.07
USP53-209ENST00000514665 CCDC96Q2M329 555 aa14.58□□□□□ -0.07
USP53-209ENST00000514665 IQCEQ6IPM2 695 aa14.58□□□□□ -0.07
USP53-209ENST00000514665 GADD45BO75293 160 aaPredicted RBP14.58□□□□□ -0.08
USP53-209ENST00000514665 TAX1BP1Q86VP1 789 aa14.58□□□□□ -0.08
USP53-209ENST00000514665 CRACR2BQ8N4Y2 399 aaPredicted RBP14.58□□□□□ -0.08
USP53-209ENST00000514665 SLC4A4Q9Y6R1 1079 aa14.58□□□□□ -0.08
USP53-209ENST00000514665 INSRP06213 1382 aa14.58□□□□□ -0.08
USP53-209ENST00000514665 YEATS4O95619 227 aa14.58□□□□□ -0.08
USP53-209ENST00000514665 DHX37Q8IY37 1157 aaKnown RBP14.58□□□□□ -0.08
USP53-209ENST00000514665 GBP3Q9H0R5 595 aa14.58□□□□□ -0.08
USP53-209ENST00000514665 PAXBP1Q9Y5B6 917 aa14.58□□□□□ -0.08
USP53-209ENST00000514665 PKP1Q13835 747 aa14.58□□□□□ -0.08
USP53-209ENST00000514665 RTN1Q16799 776 aa14.58□□□□□ -0.08
USP53-209ENST00000514665 CCDC150Q8NCX0 1101 aa14.58□□□□□ -0.08
USP53-209ENST00000514665 ZBTB9Q96C00 473 aa14.58□□□□□ -0.08
USP53-209ENST00000514665 LMBRD1Q9NUN5 540 aa14.58□□□□□ -0.08
USP53-209ENST00000514665 RNF113AO15541 343 aaKnown RBP14.57□□□□□ -0.08
USP53-209ENST00000514665 KIAA0754O94854 1291 aa14.57□□□□□ -0.08
USP53-209ENST00000514665 HS1BP3Q53T59 392 aa14.57□□□□□ -0.08
USP53-209ENST00000514665 TRMT2AQ8IZ69 625 aaKnown RBP14.57□□□□□ -0.08
USP53-209ENST00000514665 A0A1B0GVL5 298 aa14.57□□□□□ -0.08
USP53-209ENST00000514665 C6orf229H3BNL8 230 aa14.57□□□□□ -0.08
USP53-209ENST00000514665 C17orf53Q8N3J3 647 aaPredicted RBP14.57□□□□□ -0.08
USP53-209ENST00000514665 TCP11L1Q9NUJ3 509 aa14.57□□□□□ -0.08
USP53-209ENST00000514665 NCOA5Q9HCD5 579 aaKnown RBP14.57□□□□□ -0.08
USP53-209ENST00000514665 TMEM63CQ9P1W3 806 aa14.56□□□□□ -0.08
USP53-209ENST00000514665 GTF2F1P35269 517 aaKnown RBP eCLIP14.56□□□□□ -0.08
USP53-209ENST00000514665 RTL1A6NKG5 1358 aa14.56□□□□□ -0.08
USP53-209ENST00000514665 ZMYM3Q14202 1370 aa14.56□□□□□ -0.08
USP53-209ENST00000514665 EDC4Q6P2E9 1401 aaKnown RBP14.56□□□□□ -0.08
USP53-209ENST00000514665 TRMT1LQ7Z2T5 733 aaKnown RBP14.56□□□□□ -0.08
USP53-209ENST00000514665 KAT14Q9H8E8 782 aa14.56□□□□□ -0.08
USP53-209ENST00000514665 SAMD9Q5K651 1589 aa14.56□□□□□ -0.08
USP53-209ENST00000514665 ZNF521Q96K83 1311 aa14.56□□□□□ -0.08
USP53-209ENST00000514665 KIF5BP33176 963 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 MIGA1Q8NAN2 632 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 EDC3Q96F86 508 aaKnown RBP14.55□□□□□ -0.08
USP53-209ENST00000514665 FAM89AQ96GI7 184 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 ZMYND15Q9H091 742 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 MAST1Q9Y2H9 1570 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 SLC27A2O14975 620 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 NEFHP12036 1026 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 PDE4BQ07343 736 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 ZNF790Q6PG37 636 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 ESR2Q92731 530 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 ACSBG1Q96GR2 724 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 IFNKQ9P0W0 207 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 PALD1Q9ULE6 856 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 IGSF3O75054 1194 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 OTUD7BQ6GQQ9 843 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 KANK3Q6NY19 840 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 RAB34Q9BZG1 259 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 RAD50Q92878 1312 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 STX17P56962 302 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 USP44Q9H0E7 712 aa14.55□□□□□ -0.08
USP53-209ENST00000514665 EIF4G3O43432 1585 aaKnown RBP14.54□□□□□ -0.08
USP53-209ENST00000514665 RDXP35241 583 aaKnown RBP14.54□□□□□ -0.08
USP53-209ENST00000514665 TMEM266Q2M3C6 531 aa14.54□□□□□ -0.08
USP53-209ENST00000514665 DHX58Q96C10 678 aa14.54□□□□□ -0.08
USP53-209ENST00000514665 ORAI2Q96SN7 254 aa14.54□□□□□ -0.08
USP53-209ENST00000514665 KRT23Q9C075 422 aa14.54□□□□□ -0.08
USP53-209ENST00000514665 ABCC4O15439 1325 aa14.54□□□□□ -0.08
USP53-209ENST00000514665 PAFAH1B1P43034 410 aa14.54□□□□□ -0.08
USP53-209ENST00000514665 MATR3P43243 847 aaKnown RBP eCLIP14.54□□□□□ -0.083e-9■■■■□ 24.3
USP53-209ENST00000514665 ZNF445P59923 1031 aa14.54□□□□□ -0.08
USP53-209ENST00000514665 RRAGBQ5VZM2 374 aa14.54□□□□□ -0.08
USP53-209ENST00000514665 SUCLG2Q96I99 432 aa14.54□□□□□ -0.08
USP53-209ENST00000514665 TRIM47Q96LD4 638 aa14.54□□□□□ -0.08
USP53-209ENST00000514665 ZNF219Q9P2Y4 722 aaPredicted RBP14.54□□□□□ -0.08
USP53-209ENST00000514665 LIG1P18858 919 aa14.54□□□□□ -0.08
USP53-209ENST00000514665 RPS6KB1P23443 525 aa14.54□□□□□ -0.08
USP53-209ENST00000514665 IFIT1BQ5T764 474 aaKnown RBP14.54□□□□□ -0.08
USP53-209ENST00000514665 DCAF5Q96JK2 942 aa14.54□□□□□ -0.08
USP53-209ENST00000514665 TBX22Q9Y458 520 aa14.54□□□□□ -0.08
USP53-209ENST00000514665 CCDC152Q4G0S7 254 aa14.53□□□□□ -0.08
USP53-209ENST00000514665 NBPF6Q5VWK0 638 aa14.53□□□□□ -0.08
USP53-209ENST00000514665 NGLY1Q96IV0 654 aa14.53□□□□□ -0.08
USP53-209ENST00000514665 ZNF594Q96JF6 807 aaPredicted RBP14.53□□□□□ -0.08
USP53-209ENST00000514665 NBPF4Q96M43 638 aa14.53□□□□□ -0.08
USP53-209ENST00000514665 A0A1B0GUL7 405 aa14.53□□□□□ -0.08
USP53-209ENST00000514665 USO1O60763 962 aaKnown RBP14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms