RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 CENPFP49454 3210 aa14.1□□□□□ -0.15
NEDD9-215ENST00000514660 DLL1O00548 723 aa14.09□□□□□ -0.15
NEDD9-215ENST00000514660 FKTNO75072 461 aa14.09□□□□□ -0.15
NEDD9-215ENST00000514660 ANXA1P04083 346 aa14.09□□□□□ -0.15
NEDD9-215ENST00000514660 SCARF1Q14162 830 aa14.09□□□□□ -0.15
NEDD9-215ENST00000514660 WASHC4Q2M389 1173 aa14.09□□□□□ -0.15
NEDD9-215ENST00000514660 PPP1R42Q7Z4L9 355 aa14.09□□□□□ -0.15
NEDD9-215ENST00000514660 CELF1Q92879 486 aaKnown RBP14.09□□□□□ -0.15
NEDD9-215ENST00000514660 VIL1P09327 827 aaKnown RBP14.08□□□□□ -0.16
NEDD9-215ENST00000514660 RPS12P25398 132 aaKnown RBP14.08□□□□□ -0.16
NEDD9-215ENST00000514660 GPSM2P81274 684 aa14.08□□□□□ -0.16
NEDD9-215ENST00000514660 CNGB1Q14028 1251 aaPredicted RBP14.08□□□□□ -0.16
NEDD9-215ENST00000514660 PARP10Q53GL7 1025 aa14.08□□□□□ -0.16
NEDD9-215ENST00000514660 OTUD5Q96G74 571 aa14.08□□□□□ -0.16
NEDD9-215ENST00000514660 CFHR5Q9BXR6 569 aa14.08□□□□□ -0.16
NEDD9-215ENST00000514660 TMX4Q9H1E5 349 aaPredicted RBP14.08□□□□□ -0.16
NEDD9-215ENST00000514660 PSME4Q14997 1843 aa14.08□□□□□ -0.16
NEDD9-215ENST00000514660 ZNF280AP59817 542 aaPredicted RBP14.07□□□□□ -0.16
NEDD9-215ENST00000514660 OTOP1Q7RTM1 612 aa14.07□□□□□ -0.16
NEDD9-215ENST00000514660 NLRP10Q86W26 655 aa14.07□□□□□ -0.16
NEDD9-215ENST00000514660 NSFL1CQ9UNZ2 370 aaKnown RBP14.07□□□□□ -0.16
NEDD9-215ENST00000514660 CEP290O15078 2479 aa14.06□□□□□ -0.16
NEDD9-215ENST00000514660 FKBP1BP68106 108 aa14.06□□□□□ -0.16
NEDD9-215ENST00000514660 DDX46Q7L014 1031 aaKnown RBP14.06□□□□□ -0.16
NEDD9-215ENST00000514660 RTF1Q92541 710 aaKnown RBP14.06□□□□□ -0.16
NEDD9-215ENST00000514660 TRIM17Q9Y577 477 aa14.06□□□□□ -0.16
NEDD9-215ENST00000514660 ZNF646O15015 1829 aaPredicted RBP14.06□□□□□ -0.16
NEDD9-215ENST00000514660 GMLQ99445 158 aa14.05□□□□□ -0.16
NEDD9-215ENST00000514660 C6orf229H3BNL8 230 aa14.04□□□□□ -0.16
NEDD9-215ENST00000514660 PTPN12Q05209 780 aaKnown RBP14.04□□□□□ -0.16
NEDD9-215ENST00000514660 TBC1D16Q8TBP0 767 aa14.04□□□□□ -0.16
NEDD9-215ENST00000514660 FZD1Q9UP38 647 aa14.04□□□□□ -0.16
NEDD9-215ENST00000514660 H0YGN5 161 aa14.03□□□□□ -0.16
NEDD9-215ENST00000514660 HTATSF1O43719 755 aaKnown RBP14.03□□□□□ -0.16
NEDD9-215ENST00000514660 ARMC5Q96C12 935 aa14.03□□□□□ -0.16
NEDD9-215ENST00000514660 TIMELESSQ9UNS1 1208 aa14.03□□□□□ -0.16
NEDD9-215ENST00000514660 ZNF609O15014 1411 aa14.03□□□□□ -0.16
NEDD9-215ENST00000514660 NBPF9Q3BBW0 867 aa14.02□□□□□ -0.17
NEDD9-215ENST00000514660 PTPN22Q9Y2R2 807 aa14.02□□□□□ -0.17
NEDD9-215ENST00000514660 LAMB1P07942 1786 aa14.01□□□□□ -0.17
NEDD9-215ENST00000514660 PITPNM2Q9BZ72 1349 aa14.01□□□□□ -0.17
NEDD9-215ENST00000514660 WTIPA6NIX2 430 aaPredicted RBP14.01□□□□□ -0.17
NEDD9-215ENST00000514660 IGF2BP3O00425 579 aaKnown RBP eCLIP14.01□□□□□ -0.17
NEDD9-215ENST00000514660 INTS3Q68E01 1043 aaKnown RBP14.01□□□□□ -0.17
NEDD9-215ENST00000514660 RSBN1LQ6PCB5 846 aaPredicted RBP14.01□□□□□ -0.17
NEDD9-215ENST00000514660 MYOZ2Q9NPC6 264 aa14.01□□□□□ -0.17
NEDD9-215ENST00000514660 TRMT112Q9UI30 125 aaKnown RBP14.01□□□□□ -0.17
NEDD9-215ENST00000514660 SH3TC1Q8TE82 1336 aa14□□□□□ -0.17
NEDD9-215ENST00000514660 U2AF1L5P0DN76 240 aaPredicted RBP14□□□□□ -0.17
NEDD9-215ENST00000514660 U2AF1Q01081 240 aaKnown RBP eCLIP14□□□□□ -0.17
NEDD9-215ENST00000514660 TCIRG1Q13488 830 aa14□□□□□ -0.17
NEDD9-215ENST00000514660 SPRYD7Q5W111 196 aa14□□□□□ -0.17
NEDD9-215ENST00000514660 CD99L2Q8TCZ2 262 aa14□□□□□ -0.17
NEDD9-215ENST00000514660 MXD3Q9BW11 206 aa14□□□□□ -0.17
NEDD9-215ENST00000514660 ERBB4Q15303 1308 aa13.99□□□□□ -0.17
NEDD9-215ENST00000514660 PRKG1Q13976 671 aa13.99□□□□□ -0.17
NEDD9-215ENST00000514660 SF3B3Q15393 1217 aaKnown RBP13.99□□□□□ -0.17
NEDD9-215ENST00000514660 LDLRAD1Q5T700 205 aa13.99□□□□□ -0.17
NEDD9-215ENST00000514660 COPS6Q7L5N1 327 aa13.99□□□□□ -0.17
NEDD9-215ENST00000514660 TMC4Q7Z404 712 aa13.99□□□□□ -0.17
NEDD9-215ENST00000514660 SLC17A8Q8NDX2 589 aa13.99□□□□□ -0.17
NEDD9-215ENST00000514660 AGBL3Q8NEM8 1001 aa13.99□□□□□ -0.17
NEDD9-215ENST00000514660 COL6A3P12111 3177 aa13.98□□□□□ -0.17
NEDD9-215ENST00000514660 EIF2S2P20042 333 aaKnown RBP13.98□□□□□ -0.17
NEDD9-215ENST00000514660 SREBF2Q12772 1141 aa13.98□□□□□ -0.17
NEDD9-215ENST00000514660 AIMP1Q12904 312 aaKnown RBP13.98□□□□□ -0.17
NEDD9-215ENST00000514660 TTLL12Q14166 644 aaPredicted RBP13.98□□□□□ -0.17
NEDD9-215ENST00000514660 CHRDL2Q6WN34 429 aa13.98□□□□□ -0.17
NEDD9-215ENST00000514660 IFNL1Q8IU54 200 aa13.98□□□□□ -0.17
NEDD9-215ENST00000514660 XAGE3Q8WTP9 111 aa13.98□□□□□ -0.17
NEDD9-215ENST00000514660 RBM27Q9P2N5 1060 aaKnown RBP13.98□□□□□ -0.17
NEDD9-215ENST00000514660 ZSWIM8A7E2V4 1837 aa13.98□□□□□ -0.17
NEDD9-215ENST00000514660 USP17L8P0C7I0 530 aa13.97□□□□□ -0.17
NEDD9-215ENST00000514660 NECTIN2Q92692 538 aa13.97□□□□□ -0.17
NEDD9-215ENST00000514660 FAM89AQ96GI7 184 aa13.97□□□□□ -0.17
NEDD9-215ENST00000514660 ZNF333Q96JL9 665 aa13.97□□□□□ -0.17
NEDD9-215ENST00000514660 SEC31BQ9NQW1 1179 aa13.97□□□□□ -0.17
NEDD9-215ENST00000514660 SSC5DA1L4H1 1573 aa13.96□□□□□ -0.17
NEDD9-215ENST00000514660 RANBP2P49792 3224 aaKnown RBP13.96□□□□□ -0.17
NEDD9-215ENST00000514660 WNT10BO00744 389 aa13.96□□□□□ -0.17
NEDD9-215ENST00000514660 PNISRQ8TF01 805 aaKnown RBP13.96□□□□□ -0.17
NEDD9-215ENST00000514660 CLMNQ96JQ2 1002 aa13.96□□□□□ -0.17
NEDD9-215ENST00000514660 EYA3Q99504 573 aa13.96□□□□□ -0.17
NEDD9-215ENST00000514660 ZC3H12CQ9C0D7 883 aaKnown RBP13.96□□□□□ -0.17
NEDD9-215ENST00000514660 PRO3102Q9H379 93 aa13.96□□□□□ -0.17
NEDD9-215ENST00000514660 PODXL2Q9NZ53 605 aa13.96□□□□□ -0.17
NEDD9-215ENST00000514660 UFL1O94874 794 aa13.95□□□□□ -0.18
NEDD9-215ENST00000514660 GJA5P36382 358 aa13.95□□□□□ -0.18
NEDD9-215ENST00000514660 RPS8P62241 208 aaKnown RBP13.95□□□□□ -0.18
NEDD9-215ENST00000514660 CRHR2Q13324 411 aa13.95□□□□□ -0.18
NEDD9-215ENST00000514660 RTL5Q5HYW3 569 aaPredicted RBP13.95□□□□□ -0.18
NEDD9-215ENST00000514660 PTPN18Q99952 460 aa13.95□□□□□ -0.18
NEDD9-215ENST00000514660 CUL9Q8IWT3 2517 aa13.95□□□□□ -0.18
NEDD9-215ENST00000514660 A0A0C4DFX4 3053 aa13.94□□□□□ -0.18
NEDD9-215ENST00000514660 ATP5J2-PTCD1G3V325 749 aa13.94□□□□□ -0.18
NEDD9-215ENST00000514660 SASH1O94885 1247 aa13.94□□□□□ -0.18
NEDD9-215ENST00000514660 PLEKHF1Q96S99 279 aa13.94□□□□□ -0.18
NEDD9-215ENST00000514660 ISCA1Q9BUE6 129 aa13.94□□□□□ -0.18
NEDD9-215ENST00000514660 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.94□□□□□ -0.18
NEDD9-215ENST00000514660 SOX1O00570 391 aaPredicted RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms