RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 TAF1LQ8IZX4 1826 aa19.46■□□□□ 0.71
NUP54-214ENST00000514307 REC8O95072 547 aa19.45■□□□□ 0.7
NUP54-214ENST00000514307 PUM3Q15397 648 aaKnown RBP19.45■□□□□ 0.7
NUP54-214ENST00000514307 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.45■□□□□ 0.7
NUP54-214ENST00000514307 LPIN2Q92539 896 aa19.45■□□□□ 0.7
NUP54-214ENST00000514307 PARP3Q9Y6F1 533 aa19.45■□□□□ 0.7
NUP54-214ENST00000514307 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.45■□□□□ 0.7
NUP54-214ENST00000514307 IFIT1P09914 478 aaKnown RBP19.44■□□□□ 0.7
NUP54-214ENST00000514307 CHMLP26374 656 aa19.44■□□□□ 0.7
NUP54-214ENST00000514307 MFAP1P55081 439 aaKnown RBP19.44■□□□□ 0.7
NUP54-214ENST00000514307 PRR5LQ6MZQ0 368 aa19.44■□□□□ 0.7
NUP54-214ENST00000514307 XAGE2Q96GT9 111 aa19.44■□□□□ 0.7
NUP54-214ENST00000514307 ANKRD2Q9GZV1 360 aa19.44■□□□□ 0.7
NUP54-214ENST00000514307 BOLA2Q9H3K6 86 aa19.44■□□□□ 0.7
NUP54-214ENST00000514307 POLRMTO00411 1230 aaKnown RBP19.43■□□□□ 0.7
NUP54-214ENST00000514307 SLC5A1P13866 664 aa19.43■□□□□ 0.7
NUP54-214ENST00000514307 LRRFIP1Q32MZ4 808 aaKnown RBP19.43■□□□□ 0.7
NUP54-214ENST00000514307 TTC39AQ5SRH9 613 aa19.43■□□□□ 0.7
NUP54-214ENST00000514307 RPGRQ92834 1020 aaKnown RBP19.43■□□□□ 0.7
NUP54-214ENST00000514307 RBM17Q96I25 401 aaKnown RBP19.43■□□□□ 0.7
NUP54-214ENST00000514307 HAUS7Q99871 368 aa19.43■□□□□ 0.7
NUP54-214ENST00000514307 C22orf23Q9BZE7 217 aa19.43■□□□□ 0.7
NUP54-214ENST00000514307 TLR7Q9NYK1 1049 aaKnown RBP19.43■□□□□ 0.7
NUP54-214ENST00000514307 UQCRFS1P1P0C7P4 283 aa19.42■□□□□ 0.7
NUP54-214ENST00000514307 DDRGK1Q96HY6 314 aa19.42■□□□□ 0.7
NUP54-214ENST00000514307 ZNF512BQ96KM6 892 aaPredicted RBP19.42■□□□□ 0.7
NUP54-214ENST00000514307 BRIP1Q9BX63 1249 aa19.42■□□□□ 0.7
NUP54-214ENST00000514307 PNPLA7Q6ZV29 1317 aa19.42■□□□□ 0.7
NUP54-214ENST00000514307 BCORQ6W2J9 1755 aa19.42■□□□□ 0.7
NUP54-214ENST00000514307 MAP4K4O95819 1239 aaPredicted RBP19.41■□□□□ 0.7
NUP54-214ENST00000514307 C3orf67Q6ZVT6 689 aa19.41■□□□□ 0.7
NUP54-214ENST00000514307 VGLL2Q8N8G2 317 aa19.41■□□□□ 0.7
NUP54-214ENST00000514307 DIAPH3Q9NSV4 1193 aa19.41■□□□□ 0.7
NUP54-214ENST00000514307 SCN7AQ01118 1682 aa19.4■□□□□ 0.7
NUP54-214ENST00000514307 EPB41L2O43491 1005 aaKnown RBP19.4■□□□□ 0.7
NUP54-214ENST00000514307 BBOX1O75936 387 aa19.4■□□□□ 0.7
NUP54-214ENST00000514307 CHRNDQ07001 517 aa19.4■□□□□ 0.7
NUP54-214ENST00000514307 RIC1Q4ADV7 1423 aa19.4■□□□□ 0.7
NUP54-214ENST00000514307 FGFR2P21802 821 aa19.39■□□□□ 0.69
NUP54-214ENST00000514307 PDE6BP35913 854 aa19.39■□□□□ 0.69
NUP54-214ENST00000514307 DDR1Q08345 913 aa19.39■□□□□ 0.69
NUP54-214ENST00000514307 UBE4AQ14139 1066 aa19.39■□□□□ 0.69
NUP54-214ENST00000514307 KIAA1211Q6ZU35 1233 aa19.39■□□□□ 0.69
NUP54-214ENST00000514307 CCDC24Q8N4L8 307 aa19.39■□□□□ 0.69
NUP54-214ENST00000514307 HELBQ8NG08 1087 aaPredicted RBP19.39■□□□□ 0.69
NUP54-214ENST00000514307 SLC16A10Q8TF71 515 aa19.39■□□□□ 0.69
NUP54-214ENST00000514307 TBC1D32Q96NH3 1257 aa19.39■□□□□ 0.69
NUP54-214ENST00000514307 ESYT1Q9BSJ8 1104 aa19.39■□□□□ 0.69
NUP54-214ENST00000514307 MINPP1Q9UNW1 487 aa19.39■□□□□ 0.69
NUP54-214ENST00000514307 ABCC12Q96J65 1359 aa19.39■□□□□ 0.69
NUP54-214ENST00000514307 KLRG2A4D1S0 409 aaPredicted RBP19.38■□□□□ 0.69
NUP54-214ENST00000514307 MMP10P09238 476 aa19.38■□□□□ 0.69
NUP54-214ENST00000514307 HOXA10P31260 410 aaPredicted RBP19.38■□□□□ 0.69
NUP54-214ENST00000514307 GRAPQ13588 217 aa19.38■□□□□ 0.69
NUP54-214ENST00000514307 CRY2Q49AN0 593 aa19.38■□□□□ 0.69
NUP54-214ENST00000514307 TMC4Q7Z404 712 aa19.38■□□□□ 0.69
NUP54-214ENST00000514307 GRAPLQ8TC17 118 aaPredicted RBP19.38■□□□□ 0.69
NUP54-214ENST00000514307 CRAMP1Q96RY5 1269 aa19.38■□□□□ 0.69
NUP54-214ENST00000514307 FSD1Q9BTV5 496 aa19.38■□□□□ 0.69
NUP54-214ENST00000514307 GNL3LQ9NVN8 582 aaKnown RBP19.38■□□□□ 0.69
NUP54-214ENST00000514307 CELF1Q92879 486 aaKnown RBP19.37■□□□□ 0.69
NUP54-214ENST00000514307 DNAJC2Q99543 621 aaKnown RBP19.37■□□□□ 0.69
NUP54-214ENST00000514307 PAG1Q9NWQ8 432 aa19.37■□□□□ 0.69
NUP54-214ENST00000514307 PSDA5PKW4 1024 aaPredicted RBP19.36■□□□□ 0.69
NUP54-214ENST00000514307 TAF5LO75529 589 aa19.36■□□□□ 0.69
NUP54-214ENST00000514307 ALDH1B1P30837 517 aa19.36■□□□□ 0.69
NUP54-214ENST00000514307 KCNJ4P48050 445 aa19.36■□□□□ 0.69
NUP54-214ENST00000514307 RBM25P49756 843 aaKnown RBP19.36■□□□□ 0.69
NUP54-214ENST00000514307 TTF1Q15361 905 aaPredicted RBP19.36■□□□□ 0.69
NUP54-214ENST00000514307 CAVIN4Q5BKX8 364 aa19.36■□□□□ 0.69
NUP54-214ENST00000514307 USP26Q9BXU7 913 aa19.36■□□□□ 0.69
NUP54-214ENST00000514307 DAXXQ9UER7 740 aaPredicted RBP19.36■□□□□ 0.69
NUP54-214ENST00000514307 ZNF609O15014 1411 aa19.35■□□□□ 0.69
NUP54-214ENST00000514307 UBR3Q6ZT12 1888 aa19.35■□□□□ 0.69
NUP54-214ENST00000514307 RGPD3A6NKT7 1758 aaPredicted RBP19.35■□□□□ 0.69
NUP54-214ENST00000514307 RGPD4Q7Z3J3 1758 aa19.35■□□□□ 0.69
NUP54-214ENST00000514307 MCCP23508 829 aa19.35■□□□□ 0.69
NUP54-214ENST00000514307 ADORA1P30542 326 aa19.35■□□□□ 0.69
NUP54-214ENST00000514307 TMX4Q9H1E5 349 aaPredicted RBP19.35■□□□□ 0.69
NUP54-214ENST00000514307 FKBP4Q02790 459 aaKnown RBP eCLIP19.34■□□□□ 0.69
NUP54-214ENST00000514307 CCDC102BQ68D86 513 aa19.34■□□□□ 0.69
NUP54-214ENST00000514307 ZSCAN25Q6NSZ9 544 aa19.34■□□□□ 0.69
NUP54-214ENST00000514307 KBTBD3Q8NAB2 608 aa19.34■□□□□ 0.69
NUP54-214ENST00000514307 IPO9Q96P70 1041 aaKnown RBP19.34■□□□□ 0.69
NUP54-214ENST00000514307 LEMD3Q9Y2U8 911 aa19.34■□□□□ 0.69
NUP54-214ENST00000514307 GOLIM4O00461 696 aa19.33■□□□□ 0.68
NUP54-214ENST00000514307 NPR1P16066 1061 aa19.33■□□□□ 0.68
NUP54-214ENST00000514307 CWC27Q6UX04 472 aaKnown RBP19.33■□□□□ 0.68
NUP54-214ENST00000514307 ANO8Q9HCE9 1232 aaPredicted RBP19.33■□□□□ 0.68
NUP54-214ENST00000514307 SGSM2O43147 1006 aa19.32■□□□□ 0.68
NUP54-214ENST00000514307 ZFYP08048 801 aaPredicted RBP19.32■□□□□ 0.68
NUP54-214ENST00000514307 VPS37DQ86XT2 251 aa19.32■□□□□ 0.68
NUP54-214ENST00000514307 IL27Q8NEV9 243 aa19.32■□□□□ 0.68
NUP54-214ENST00000514307 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.32■□□□□ 0.68
NUP54-214ENST00000514307 ARID4AP29374 1257 aaPredicted RBP19.31■□□□□ 0.68
NUP54-214ENST00000514307 BECN1Q14457 450 aa19.31■□□□□ 0.68
NUP54-214ENST00000514307 ANO2Q9NQ90 1003 aa19.31■□□□□ 0.68
NUP54-214ENST00000514307 ANKIB1Q9P2G1 1089 aa19.31■□□□□ 0.68
NUP54-214ENST00000514307 RFX7Q2KHR2 1363 aa19.31■□□□□ 0.68
NUP54-214ENST00000514307 RAD50Q92878 1312 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms