RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 ANKRD18BA2A2Z9 1011 aa12.27□□□□□ -0.45
TOPBP1-209ENST00000513818 NFKBIEO00221 500 aa12.27□□□□□ -0.45
TOPBP1-209ENST00000513818 IFIT5Q13325 482 aaKnown RBP12.27□□□□□ -0.45
TOPBP1-209ENST00000513818 TAF7LQ5H9L4 462 aa12.27□□□□□ -0.45
TOPBP1-209ENST00000513818 ARHGAP27Q6ZUM4 889 aa12.27□□□□□ -0.45
TOPBP1-209ENST00000513818 ANKRD18AQ8IVF6 992 aa12.27□□□□□ -0.45
TOPBP1-209ENST00000513818 C7orf43Q8WVR3 580 aa12.27□□□□□ -0.45
TOPBP1-209ENST00000513818 DDX19BQ9UMR2 479 aa12.27□□□□□ -0.45
TOPBP1-209ENST00000513818 ZBTB12Q9Y330 459 aaPredicted RBP12.27□□□□□ -0.45
TOPBP1-209ENST00000513818 PNMA6EA0A0J9YXQ4 647 aa12.26□□□□□ -0.45
TOPBP1-209ENST00000513818 RPS8P62241 208 aaKnown RBP12.26□□□□□ -0.45
TOPBP1-209ENST00000513818 CCDC57Q2TAC2 916 aa12.26□□□□□ -0.45
TOPBP1-209ENST00000513818 CCDC93Q567U6 631 aa12.26□□□□□ -0.45
TOPBP1-209ENST00000513818 GPR101Q96P66 508 aaPredicted RBP12.26□□□□□ -0.45
TOPBP1-209ENST00000513818 CDC5LQ99459 802 aaKnown RBP12.26□□□□□ -0.45
TOPBP1-209ENST00000513818 PA2G4Q9UQ80 394 aaKnown RBP12.26□□□□□ -0.45
TOPBP1-209ENST00000513818 ATP6V0A2Q9Y487 856 aa12.26□□□□□ -0.45
TOPBP1-209ENST00000513818 SRGAP3O43295 1099 aa12.25□□□□□ -0.45
TOPBP1-209ENST00000513818 IGHMBP2P38935 993 aaKnown RBP12.25□□□□□ -0.45
TOPBP1-209ENST00000513818 RFX5P48382 616 aaPredicted RBP12.25□□□□□ -0.45
TOPBP1-209ENST00000513818 PRELPP51888 382 aa12.25□□□□□ -0.45
TOPBP1-209ENST00000513818 GPSM2P81274 684 aa12.25□□□□□ -0.45
TOPBP1-209ENST00000513818 PUS3Q9BZE2 481 aaKnown RBP12.25□□□□□ -0.45
TOPBP1-209ENST00000513818 SIL1Q9H173 461 aa12.25□□□□□ -0.45
TOPBP1-209ENST00000513818 ZBTB40Q9NUA8 1239 aa12.25□□□□□ -0.45
TOPBP1-209ENST00000513818 TIAM2Q8IVF5 1701 aa12.25□□□□□ -0.45
TOPBP1-209ENST00000513818 CCDC88AQ3V6T2 1871 aa12.25□□□□□ -0.45
TOPBP1-209ENST00000513818 WTIPA6NIX2 430 aaPredicted RBP12.24□□□□□ -0.45
TOPBP1-209ENST00000513818 BBOX1O75936 387 aa12.24□□□□□ -0.45
TOPBP1-209ENST00000513818 COL4A5P29400 1685 aa12.24□□□□□ -0.45
TOPBP1-209ENST00000513818 LRRC24Q50LG9 513 aa12.24□□□□□ -0.45
TOPBP1-209ENST00000513818 CEP85Q6P2H3 762 aa12.24□□□□□ -0.45
TOPBP1-209ENST00000513818 EXOC6Q8TAG9 804 aa12.24□□□□□ -0.45
TOPBP1-209ENST00000513818 MPHOSPH8Q99549 860 aa12.24□□□□□ -0.45
TOPBP1-209ENST00000513818 SNAP23O00161 211 aa12.23□□□□□ -0.45
TOPBP1-209ENST00000513818 PTPN12Q05209 780 aaKnown RBP12.23□□□□□ -0.45
TOPBP1-209ENST00000513818 SP8Q8IXZ3 490 aa12.23□□□□□ -0.45
TOPBP1-209ENST00000513818 HELBQ8NG08 1087 aaPredicted RBP12.23□□□□□ -0.45
TOPBP1-209ENST00000513818 TAOK3Q9H2K8 898 aa12.23□□□□□ -0.45
TOPBP1-209ENST00000513818 ZNF277Q9NRM2 450 aaPredicted RBP12.23□□□□□ -0.45
TOPBP1-209ENST00000513818 CNNM1Q9NRU3 951 aa12.23□□□□□ -0.45
TOPBP1-209ENST00000513818 NSFL1CQ9UNZ2 370 aaKnown RBP12.23□□□□□ -0.45
TOPBP1-209ENST00000513818 SBF1O95248 1867 aa12.23□□□□□ -0.45
TOPBP1-209ENST00000513818 GRIN3BO60391 1043 aa12.22□□□□□ -0.45
TOPBP1-209ENST00000513818 TAF5LO75529 589 aa12.22□□□□□ -0.45
TOPBP1-209ENST00000513818 CENPBP07199 599 aaPredicted RBP12.22□□□□□ -0.45
TOPBP1-209ENST00000513818 FKBP4Q02790 459 aaKnown RBP eCLIP12.22□□□□□ -0.45
TOPBP1-209ENST00000513818 CHRNDQ07001 517 aa12.22□□□□□ -0.45
TOPBP1-209ENST00000513818 MTX1Q13505 466 aa12.22□□□□□ -0.45
TOPBP1-209ENST00000513818 DPP8Q6V1X1 898 aaPredicted RBP12.22□□□□□ -0.45
TOPBP1-209ENST00000513818 LDHAL6AQ6ZMR3 332 aa12.22□□□□□ -0.45
TOPBP1-209ENST00000513818 BBXQ8WY36 941 aaPredicted RBP12.22□□□□□ -0.45
TOPBP1-209ENST00000513818 BSDC1Q9NW68 430 aaPredicted RBP12.22□□□□□ -0.45
TOPBP1-209ENST00000513818 MINPP1Q9UNW1 487 aa12.22□□□□□ -0.45
TOPBP1-209ENST00000513818 UFL1O94874 794 aa12.21□□□□□ -0.45
TOPBP1-209ENST00000513818 KLRK1P26718 216 aa12.21□□□□□ -0.45
TOPBP1-209ENST00000513818 SOGA3Q5TF21 947 aa12.21□□□□□ -0.45
TOPBP1-209ENST00000513818 SIRT2Q8IXJ6 389 aa12.21□□□□□ -0.45
TOPBP1-209ENST00000513818 MPNDQ8N594 471 aa12.21□□□□□ -0.45
TOPBP1-209ENST00000513818 TMX4Q9H1E5 349 aaPredicted RBP12.21□□□□□ -0.45
TOPBP1-209ENST00000513818 ANKIB1Q9P2G1 1089 aa12.21□□□□□ -0.45
TOPBP1-209ENST00000513818 HDAC5Q9UQL6 1122 aa12.21□□□□□ -0.45
TOPBP1-209ENST00000513818 XDHP47989 1333 aa12.2□□□□□ -0.46
TOPBP1-209ENST00000513818 C6orf229H3BNL8 230 aa12.2□□□□□ -0.46
TOPBP1-209ENST00000513818 RIMBP2O15034 1052 aa12.2□□□□□ -0.46
TOPBP1-209ENST00000513818 ATP8B2P98198 1209 aa12.2□□□□□ -0.46
TOPBP1-209ENST00000513818 AOC3Q16853 763 aa12.2□□□□□ -0.46
TOPBP1-209ENST00000513818 TMC4Q7Z404 712 aa12.2□□□□□ -0.46
TOPBP1-209ENST00000513818 RTKN2Q8IZC4 609 aa12.2□□□□□ -0.46
TOPBP1-209ENST00000513818 TBC1D16Q8TBP0 767 aa12.2□□□□□ -0.46
TOPBP1-209ENST00000513818 RNF181Q9P0P0 153 aa12.2□□□□□ -0.46
TOPBP1-209ENST00000513818 POLLQ9UGP5 575 aa12.2□□□□□ -0.46
TOPBP1-209ENST00000513818 CHD4Q14839 1912 aa12.19□□□□□ -0.46
TOPBP1-209ENST00000513818 EYA2O00167 538 aa12.19□□□□□ -0.46
TOPBP1-209ENST00000513818 METTL24Q5JXM2 366 aa12.19□□□□□ -0.46
TOPBP1-209ENST00000513818 C9orf131Q5VYM1 1079 aa12.19□□□□□ -0.46
TOPBP1-209ENST00000513818 CC2D2BQ6DHV5 1058 aa12.19□□□□□ -0.46
TOPBP1-209ENST00000513818 ATG9AQ7Z3C6 839 aa12.19□□□□□ -0.46
TOPBP1-209ENST00000513818 GGA1Q9UJY5 639 aa12.19□□□□□ -0.46
TOPBP1-209ENST00000513818 RIPOR2Q9Y4F9 1068 aa12.19□□□□□ -0.46
TOPBP1-209ENST00000513818 PCDHB15Q9Y5E8 787 aa12.19□□□□□ -0.46
TOPBP1-209ENST00000513818 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.19□□□□□ -0.46
TOPBP1-209ENST00000513818 DICER1Q9UPY3 1922 aaKnown RBP12.19□□□□□ -0.46
TOPBP1-209ENST00000513818 LTBP3Q9NS15 1303 aa12.18□□□□□ -0.46
TOPBP1-209ENST00000513818 PPIP5K2O43314 1243 aa12.18□□□□□ -0.46
TOPBP1-209ENST00000513818 IARSP41252 1262 aaKnown RBP12.18□□□□□ -0.46
TOPBP1-209ENST00000513818 KCNJ4P48050 445 aa12.18□□□□□ -0.46
TOPBP1-209ENST00000513818 SSH3Q8TE77 659 aa12.18□□□□□ -0.46
TOPBP1-209ENST00000513818 PSMD1Q99460 953 aa12.18□□□□□ -0.46
TOPBP1-209ENST00000513818 COPRSQ9NQ92 184 aa12.18□□□□□ -0.46
TOPBP1-209ENST00000513818 EXOC6BQ9Y2D4 811 aa12.18□□□□□ -0.46
TOPBP1-209ENST00000513818 APBB1O00213 710 aa12.17□□□□□ -0.46
TOPBP1-209ENST00000513818 SURF6O75683 361 aaKnown RBP12.17□□□□□ -0.46
TOPBP1-209ENST00000513818 LMNB1P20700 586 aa12.17□□□□□ -0.46
TOPBP1-209ENST00000513818 VASPP50552 380 aaPredicted RBP12.17□□□□□ -0.46
TOPBP1-209ENST00000513818 PAXIP1Q6ZW49 1069 aaPredicted RBP12.17□□□□□ -0.46
TOPBP1-209ENST00000513818 TXNRD3Q86VQ6 643 aa12.17□□□□□ -0.46
TOPBP1-209ENST00000513818 VGLL2Q8N8G2 317 aa12.17□□□□□ -0.46
TOPBP1-209ENST00000513818 RTFDC1Q9BY42 306 aaPredicted RBP12.17□□□□□ -0.46
TOPBP1-209ENST00000513818 ANKRD2Q9GZV1 360 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms