RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 TBC1D16Q8TBP0 767 aa14.39□□□□□ -0.11
DDX41-216ENST00000513562 ZNF296Q8WUU4 475 aaPredicted RBP14.39□□□□□ -0.11
DDX41-216ENST00000513562 BABAM1Q9NWV8 329 aa14.39□□□□□ -0.11
DDX41-216ENST00000513562 NOM1Q5C9Z4 860 aaKnown RBP14.38□□□□□ -0.11
DDX41-216ENST00000513562 ANGEL2Q5VTE6 544 aaKnown RBP14.38□□□□□ -0.11
DDX41-216ENST00000513562 HDAC9Q9UKV0 1011 aa14.38□□□□□ -0.11
DDX41-216ENST00000513562 COL4A1P02462 1669 aa14.38□□□□□ -0.11
DDX41-216ENST00000513562 MAPK8IP3Q9UPT6 1336 aa14.38□□□□□ -0.11
DDX41-216ENST00000513562 PAPPA2Q9BXP8 1791 aa14.37□□□□□ -0.11
DDX41-216ENST00000513562 SCARF1Q14162 830 aa14.37□□□□□ -0.11
DDX41-216ENST00000513562 NECTIN2Q92692 538 aa14.37□□□□□ -0.11
DDX41-216ENST00000513562 GCC1Q96CN9 775 aa14.37□□□□□ -0.11
DDX41-216ENST00000513562 ISCA1Q9BUE6 129 aa14.37□□□□□ -0.11
DDX41-216ENST00000513562 PODXL2Q9NZ53 605 aa14.37□□□□□ -0.11
DDX41-216ENST00000513562 PITPNM2Q9BZ72 1349 aa14.37□□□□□ -0.11
DDX41-216ENST00000513562 DDX60Q8IY21 1712 aaKnown RBP14.36□□□□□ -0.11
DDX41-216ENST00000513562 TBC1D8O95759 1140 aa14.36□□□□□ -0.11
DDX41-216ENST00000513562 RSBN1LQ6PCB5 846 aaPredicted RBP14.36□□□□□ -0.11
DDX41-216ENST00000513562 FBXO46Q6PJ61 603 aaPredicted RBP14.36□□□□□ -0.11
DDX41-216ENST00000513562 AGBL3Q8NEM8 1001 aa14.36□□□□□ -0.11
DDX41-216ENST00000513562 ZNF428Q96B54 188 aa14.36□□□□□ -0.11
DDX41-216ENST00000513562 FAM89AQ96GI7 184 aa14.36□□□□□ -0.11
DDX41-216ENST00000513562 ZC3H12CQ9C0D7 883 aaKnown RBP14.36□□□□□ -0.11
DDX41-216ENST00000513562 DLG5Q8TDM6 1919 aa14.36□□□□□ -0.11
DDX41-216ENST00000513562 GPR25O00155 361 aa14.35□□□□□ -0.11
DDX41-216ENST00000513562 TM4SF4P48230 202 aa14.35□□□□□ -0.11
DDX41-216ENST00000513562 MOB2Q70IA6 237 aa14.35□□□□□ -0.11
DDX41-216ENST00000513562 PLBD2Q8NHP8 589 aa14.35□□□□□ -0.11
DDX41-216ENST00000513562 GMLQ99445 158 aa14.35□□□□□ -0.11
DDX41-216ENST00000513562 PNNQ9H307 717 aaKnown RBP14.35□□□□□ -0.11
DDX41-216ENST00000513562 HTTP42858 3142 aa14.34□□□□□ -0.11
DDX41-216ENST00000513562 UFL1O94874 794 aa14.34□□□□□ -0.11
DDX41-216ENST00000513562 RPS8P62241 208 aaKnown RBP14.34□□□□□ -0.11
DDX41-216ENST00000513562 CFHR5Q9BXR6 569 aa14.34□□□□□ -0.11
DDX41-216ENST00000513562 MYOZ2Q9NPC6 264 aa14.34□□□□□ -0.11
DDX41-216ENST00000513562 MKI67P46013 3256 aaKnown RBP14.34□□□□□ -0.11
DDX41-216ENST00000513562 UBE2Q2LH0YL09 131 aa14.33□□□□□ -0.12
DDX41-216ENST00000513562 USP17L8P0C7I0 530 aa14.33□□□□□ -0.12
DDX41-216ENST00000513562 CHPF2Q9P2E5 772 aa14.33□□□□□ -0.12
DDX41-216ENST00000513562 GGA1Q9UJY5 639 aa14.33□□□□□ -0.12
DDX41-216ENST00000513562 TAF1P21675 1872 aa14.33□□□□□ -0.12
DDX41-216ENST00000513562 ATP5J2-PTCD1G3V325 749 aa14.32□□□□□ -0.12
DDX41-216ENST00000513562 G3V3G9 751 aa14.32□□□□□ -0.12
DDX41-216ENST00000513562 IRS4O14654 1257 aaPredicted RBP14.32□□□□□ -0.12
DDX41-216ENST00000513562 RIPK4P57078 832 aa14.32□□□□□ -0.12
DDX41-216ENST00000513562 HABP4Q5JVS0 413 aaKnown RBP14.32□□□□□ -0.12
DDX41-216ENST00000513562 DCAF8Q5TAQ9 597 aa14.32□□□□□ -0.12
DDX41-216ENST00000513562 ANKRD13DQ6ZTN6 518 aa14.32□□□□□ -0.12
DDX41-216ENST00000513562 AKAP11Q9UKA4 1901 aa14.32□□□□□ -0.12
DDX41-216ENST00000513562 TRIM28Q13263 835 aaKnown RBP14.31□□□□□ -0.12
DDX41-216ENST00000513562 KRT24Q2M2I5 525 aa14.31□□□□□ -0.12
DDX41-216ENST00000513562 ANKIB1Q9P2G1 1089 aa14.31□□□□□ -0.12
DDX41-216ENST00000513562 SCAF8Q9UPN6 1271 aaKnown RBP14.31□□□□□ -0.12
DDX41-216ENST00000513562 SCN9AQ15858 1988 aa14.31□□□□□ -0.12
DDX41-216ENST00000513562 FKTNO75072 461 aa14.3□□□□□ -0.12
DDX41-216ENST00000513562 LMOD3Q0VAK6 560 aa14.3□□□□□ -0.12
DDX41-216ENST00000513562 SREBF2Q12772 1141 aa14.3□□□□□ -0.12
DDX41-216ENST00000513562 RTL5Q5HYW3 569 aaPredicted RBP14.3□□□□□ -0.12
DDX41-216ENST00000513562 PRAMEF18Q5VWM3 479 aa14.3□□□□□ -0.12
DDX41-216ENST00000513562 SEC31BQ9NQW1 1179 aa14.3□□□□□ -0.12
DDX41-216ENST00000513562 USP17L3A6NCW0 530 aa14.29□□□□□ -0.12
DDX41-216ENST00000513562 USP17L4A6NCW7 530 aa14.29□□□□□ -0.12
DDX41-216ENST00000513562 MKRN3Q13064 507 aaKnown RBP14.29□□□□□ -0.12
DDX41-216ENST00000513562 HDGFL1Q5TGJ6 251 aa14.29□□□□□ -0.12
DDX41-216ENST00000513562 USP17L1Q7RTZ2 530 aa14.29□□□□□ -0.12
DDX41-216ENST00000513562 PODNQ7Z5L7 613 aa14.29□□□□□ -0.12
DDX41-216ENST00000513562 R3HDMLQ9H3Y0 253 aa14.29□□□□□ -0.12
DDX41-216ENST00000513562 DBF4Q9UBU7 674 aaPredicted RBP14.29□□□□□ -0.12
DDX41-216ENST00000513562 CHL1O00533 1208 aa14.28□□□□□ -0.12
DDX41-216ENST00000513562 HOXB7P09629 217 aa14.28□□□□□ -0.12
DDX41-216ENST00000513562 TMPOP42166 694 aaKnown RBP14.28□□□□□ -0.12
DDX41-216ENST00000513562 XDHP47989 1333 aa14.28□□□□□ -0.12
DDX41-216ENST00000513562 TTLL12Q14166 644 aaPredicted RBP14.28□□□□□ -0.12
DDX41-216ENST00000513562 NBPF9Q3BBW0 867 aa14.28□□□□□ -0.12
DDX41-216ENST00000513562 ZBTB38Q8NAP3 1195 aaPredicted RBP14.28□□□□□ -0.12
DDX41-216ENST00000513562 BRCA2P51587 3418 aa14.27□□□□□ -0.12
DDX41-216ENST00000513562 HSP90B1P14625 803 aaKnown RBP14.27□□□□□ -0.13
DDX41-216ENST00000513562 NF2P35240 595 aa14.27□□□□□ -0.13
DDX41-216ENST00000513562 POLR2AP24928 1970 aaKnown RBP14.27□□□□□ -0.13
DDX41-216ENST00000513562 POTEFA5A3E0 1075 aa14.26□□□□□ -0.13
DDX41-216ENST00000513562 WNT10BO00744 389 aa14.26□□□□□ -0.13
DDX41-216ENST00000513562 ALDH1A1P00352 501 aa14.26□□□□□ -0.13
DDX41-216ENST00000513562 PTPN12Q05209 780 aaKnown RBP14.26□□□□□ -0.13
DDX41-216ENST00000513562 CCDC152Q4G0S7 254 aa14.26□□□□□ -0.13
DDX41-216ENST00000513562 INTS3Q68E01 1043 aaKnown RBP14.26□□□□□ -0.13
DDX41-216ENST00000513562 HYPKQ9NX55 129 aa14.26□□□□□ -0.13
DDX41-216ENST00000513562 CENPFP49454 3210 aa14.25□□□□□ -0.13
DDX41-216ENST00000513562 MED23Q9ULK4 1368 aa14.25□□□□□ -0.13
DDX41-216ENST00000513562 ATP2B4P23634 1241 aa14.25□□□□□ -0.13
DDX41-216ENST00000513562 DACT2Q5SW24 774 aa14.25□□□□□ -0.13
DDX41-216ENST00000513562 LDLRAD1Q5T700 205 aa14.25□□□□□ -0.13
DDX41-216ENST00000513562 SPRYD7Q5W111 196 aa14.25□□□□□ -0.13
DDX41-216ENST00000513562 OGFOD1Q8N543 542 aa14.25□□□□□ -0.13
DDX41-216ENST00000513562 TRIM17Q9Y577 477 aa14.25□□□□□ -0.13
DDX41-216ENST00000513562 MYO3BQ8WXR4 1341 aa14.24□□□□□ -0.13
DDX41-216ENST00000513562 OTOP1Q7RTM1 612 aa14.24□□□□□ -0.13
DDX41-216ENST00000513562 ARMC9Q7Z3E5 817 aa14.24□□□□□ -0.13
DDX41-216ENST00000513562 MXD3Q9BW11 206 aa14.24□□□□□ -0.13
DDX41-216ENST00000513562 PSME4Q14997 1843 aa14.23□□□□□ -0.13
DDX41-216ENST00000513562 PDE8AO60658 829 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms