RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 LMOD1P29536 600 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-211ENST00000513346 DDB1Q16531 1140 aa12.91□□□□□ -0.34
TCOF1-211ENST00000513346 CAVIN4Q5BKX8 364 aa12.91□□□□□ -0.34
TCOF1-211ENST00000513346 DHX37Q8IY37 1157 aaKnown RBP12.91□□□□□ -0.34
TCOF1-211ENST00000513346 OTUD7AQ8TE49 926 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-211ENST00000513346 PPM1EQ8WY54 764 aa12.91□□□□□ -0.34
TCOF1-211ENST00000513346 CDCA7Q9BWT1 371 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-211ENST00000513346 SLAIN2Q9P270 581 aa12.91□□□□□ -0.34
TCOF1-211ENST00000513346 EPS15P42566 896 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 ATP8B2P98198 1209 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 KIAA1524Q8TCG1 905 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 PDLIM2Q96JY6 352 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 CLSTN2Q9H4D0 955 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 RBM8AQ9Y5S9 174 aaKnown RBP12.9□□□□□ -0.34
TCOF1-211ENST00000513346 PIK3R4Q99570 1358 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 PHACTR2O75167 634 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 YEATS4O95619 227 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 PAFAH1B1P43034 410 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 WASF1Q92558 559 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 CDK5RAP3Q96JB5 506 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 MAP3K19Q56UN5 1328 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 SNRPA1P09661 255 aaKnown RBP12.9□□□□□ -0.34
TCOF1-211ENST00000513346 BRF1Q92994 677 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 EYA1Q99502 592 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 NUP88Q99567 741 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-211ENST00000513346 CEP131Q9UPN4 1083 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 PTPRTO14522 1441 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 FLT4P35916 1363 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 OAS2P29728 719 aaKnown RBP12.9□□□□□ -0.34
TCOF1-211ENST00000513346 SPA17Q15506 151 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 CCDC102BQ68D86 513 aa12.9□□□□□ -0.34
TCOF1-211ENST00000513346 MLH3Q9UHC1 1453 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 CCDC175P0C221 793 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 PPP2R3AQ06190 1150 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 NBPF14Q5TI25 921 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 KCNG4Q8TDN1 519 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 CARD6Q9BX69 1037 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 ADGBQ8N7X0 1667 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 ATP5J2-PTCD1G3V325 749 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 DRC1Q96MC2 740 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 TCEANC2Q96MN5 208 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 USP16Q9Y5T5 823 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 SOGA3Q5TF21 947 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 TICAM2Q86XR7 235 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 CHPF2Q9P2E5 772 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 ANKRD18BA2A2Z9 1011 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 LRMPQ12912 555 aa12.89□□□□□ -0.35
TCOF1-211ENST00000513346 UTP14AQ9BVJ6 771 aaKnown RBP12.89□□□□□ -0.35
TCOF1-211ENST00000513346 ZFYVE9O95405 1425 aa12.88□□□□□ -0.35
TCOF1-211ENST00000513346 POLR3DP05423 398 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-211ENST00000513346 SYKP43405 635 aa12.88□□□□□ -0.35
TCOF1-211ENST00000513346 UBE3BQ7Z3V4 1068 aa12.88□□□□□ -0.35
TCOF1-211ENST00000513346 INCENPQ9NQS7 918 aa12.88□□□□□ -0.35
TCOF1-211ENST00000513346 IMPACTQ9P2X3 320 aa12.88□□□□□ -0.35
TCOF1-211ENST00000513346 CTAGE9A4FU28 777 aa12.88□□□□□ -0.35
TCOF1-211ENST00000513346 ANKIB1Q9P2G1 1089 aa12.88□□□□□ -0.35
TCOF1-211ENST00000513346 ZCRB1Q8TBF4 217 aaKnown RBP12.88□□□□□ -0.35
TCOF1-211ENST00000513346 PRM3Q9NNZ6 103 aa12.88□□□□□ -0.35
TCOF1-211ENST00000513346 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.88□□□□□ -0.355e-7■■■□□ 16.3
TCOF1-211ENST00000513346 CKAP4Q07065 602 aaKnown RBP12.87□□□□□ -0.35
TCOF1-211ENST00000513346 ZRSR2Q15696 482 aaKnown RBP12.87□□□□□ -0.35
TCOF1-211ENST00000513346 ERCC6LQ2NKX8 1250 aa12.87□□□□□ -0.35
TCOF1-211ENST00000513346 OTUD6BQ8N6M0 293 aa12.87□□□□□ -0.35
TCOF1-211ENST00000513346 JARID2Q92833 1246 aaPredicted RBP12.87□□□□□ -0.35
TCOF1-211ENST00000513346 ACSBG1Q96GR2 724 aa12.87□□□□□ -0.35
TCOF1-211ENST00000513346 CHAMP1Q96JM3 812 aa12.87□□□□□ -0.35
TCOF1-211ENST00000513346 GSPT1P15170 499 aaKnown RBP12.87□□□□□ -0.35
TCOF1-211ENST00000513346 SLC39A6Q13433 755 aa12.87□□□□□ -0.35
TCOF1-211ENST00000513346 GBP6Q6ZN66 633 aa12.87□□□□□ -0.35
TCOF1-211ENST00000513346 TAF4BQ92750 862 aa12.87□□□□□ -0.35
TCOF1-211ENST00000513346 SAMD9LQ8IVG5 1584 aa12.87□□□□□ -0.35
TCOF1-211ENST00000513346 USO1O60763 962 aaKnown RBP12.87□□□□□ -0.35
TCOF1-211ENST00000513346 ATP2B3Q16720 1220 aa12.87□□□□□ -0.35
TCOF1-211ENST00000513346 RNF216Q9NWF9 866 aaPredicted RBP12.87□□□□□ -0.35
TCOF1-211ENST00000513346 CWC25Q9NXE8 425 aaPredicted RBP12.87□□□□□ -0.35
TCOF1-211ENST00000513346 TMOD2Q9NZR1 351 aa12.87□□□□□ -0.35
TCOF1-211ENST00000513346 PUF60Q9UHX1 559 aaKnown RBP12.87□□□□□ -0.35
TCOF1-211ENST00000513346 SMC1AQ14683 1233 aaKnown RBP12.87□□□□□ -0.35
TCOF1-211ENST00000513346 WWC3Q9ULE0 1092 aa12.87□□□□□ -0.35
TCOF1-211ENST00000513346 RTL1A6NKG5 1358 aa12.87□□□□□ -0.35
TCOF1-211ENST00000513346 GBP2P32456 591 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-211ENST00000513346 MAP3K12Q12852 859 aa12.86□□□□□ -0.35
TCOF1-211ENST00000513346 DNAJC21Q5F1R6 531 aaKnown RBP12.86□□□□□ -0.35
TCOF1-211ENST00000513346 LDHAL6AQ6ZMR3 332 aa12.86□□□□□ -0.35
TCOF1-211ENST00000513346 ANKRD13DQ6ZTN6 518 aa12.86□□□□□ -0.35
TCOF1-211ENST00000513346 PAXIP1Q6ZW49 1069 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-211ENST00000513346 RUFY3Q7L099 469 aa12.86□□□□□ -0.35
TCOF1-211ENST00000513346 MKRN1Q9UHC7 482 aaKnown RBP12.86□□□□□ -0.35
TCOF1-211ENST00000513346 ZNF335Q9H4Z2 1342 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-211ENST00000513346 OPA1O60313 960 aa12.86□□□□□ -0.35
TCOF1-211ENST00000513346 SLC5A1P13866 664 aa12.86□□□□□ -0.35
TCOF1-211ENST00000513346 TAX1BP1Q86VP1 789 aa12.86□□□□□ -0.35
TCOF1-211ENST00000513346 NEK11Q8NG66 645 aa12.86□□□□□ -0.35
TCOF1-211ENST00000513346 ORC3Q9UBD5 711 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-211ENST00000513346 ELP1O95163 1332 aa12.86□□□□□ -0.35
TCOF1-211ENST00000513346 HSF2BPO75031 334 aa12.86□□□□□ -0.35
TCOF1-211ENST00000513346 KRT18P05783 430 aaKnown RBP12.86□□□□□ -0.35
TCOF1-211ENST00000513346 CTCFLQ8NI51 663 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-211ENST00000513346 TRIM35Q9UPQ4 493 aa12.86□□□□□ -0.35
TCOF1-211ENST00000513346 ARHGEF10O15013 1369 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms