RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, humanhuman

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-215ENST00000511843 DOK7Q18PE1 504 aa16.88■□□□□ 0.29
RNF4-215ENST00000511843 CDC5LQ99459 802 aaKnown RBP16.88■□□□□ 0.29
RNF4-215ENST00000511843 PLA2G12BQ9BX93 195 aa16.88■□□□□ 0.29
RNF4-215ENST00000511843 RTL9Q8NET4 1388 aa16.88■□□□□ 0.29
RNF4-215ENST00000511843 ITGA6P23229 1130 aa16.87■□□□□ 0.29
RNF4-215ENST00000511843 FOXO4P98177 505 aa16.87■□□□□ 0.29
RNF4-215ENST00000511843 EPHA10Q5JZY3 1008 aa16.87■□□□□ 0.29
RNF4-215ENST00000511843 CIAPIN1Q6FI81 312 aa16.87■□□□□ 0.29
RNF4-215ENST00000511843 SRCIN1Q9C0H9 1055 aa16.87■□□□□ 0.29
RNF4-215ENST00000511843 KCNQ5Q9NR82 932 aa16.87■□□□□ 0.29
RNF4-215ENST00000511843 CLEC11AQ9Y240 323 aa16.87■□□□□ 0.29
RNF4-215ENST00000511843 GRM8O00222 908 aa16.86■□□□□ 0.29
RNF4-215ENST00000511843 ECE2O60344 883 aa16.86■□□□□ 0.29
RNF4-215ENST00000511843 LMOD1P29536 600 aaPredicted RBP16.86■□□□□ 0.29
RNF4-215ENST00000511843 GMPSP49915 693 aaPredicted RBP16.86■□□□□ 0.29
RNF4-215ENST00000511843 LDHDQ86WU2 507 aa16.86■□□□□ 0.29
RNF4-215ENST00000511843 PODXL2Q9NZ53 605 aa16.86■□□□□ 0.29
RNF4-215ENST00000511843 GGA1Q9UJY5 639 aa16.86■□□□□ 0.29
RNF4-215ENST00000511843 MINPP1Q9UNW1 487 aa16.86■□□□□ 0.29
RNF4-215ENST00000511843 CHMP3Q9Y3E7 222 aa16.86■□□□□ 0.29
RNF4-215ENST00000511843 ZNF646O15015 1829 aaPredicted RBP16.86■□□□□ 0.29
RNF4-215ENST00000511843 SHTN1A0MZ66 631 aa16.85■□□□□ 0.29
RNF4-215ENST00000511843 CSF1RP07333 972 aa16.85■□□□□ 0.29
RNF4-215ENST00000511843 EYA3Q99504 573 aa16.85■□□□□ 0.29
RNF4-215ENST00000511843 SMC4Q9NTJ3 1288 aa16.85■□□□□ 0.29
RNF4-215ENST00000511843 C9orf78Q9NZ63 289 aaPredicted RBP16.85■□□□□ 0.29
RNF4-215ENST00000511843 ZBTB12Q9Y330 459 aaPredicted RBP16.85■□□□□ 0.29
RNF4-215ENST00000511843 XDHP47989 1333 aa16.85■□□□□ 0.29
RNF4-215ENST00000511843 PSMD14O00487 310 aa16.84■□□□□ 0.29
RNF4-215ENST00000511843 ALDH1L1O75891 902 aa16.84■□□□□ 0.29
RNF4-215ENST00000511843 MAP1SQ66K74 1059 aaPredicted RBP16.84■□□□□ 0.29
RNF4-215ENST00000511843 ZC3H12CQ9C0D7 883 aaKnown RBP16.84■□□□□ 0.29
RNF4-215ENST00000511843 BSDC1Q9NW68 430 aaPredicted RBP16.84■□□□□ 0.29
RNF4-215ENST00000511843 GPRC5DQ9NZD1 345 aa16.84■□□□□ 0.29
RNF4-215ENST00000511843 POLR2AP24928 1970 aaKnown RBP16.83■□□□□ 0.28
RNF4-215ENST00000511843 IGHMBP2P38935 993 aaKnown RBP16.83■□□□□ 0.28
RNF4-215ENST00000511843 LMBR1LQ6UX01 489 aa16.83■□□□□ 0.28
RNF4-215ENST00000511843 PNMA8AQ86V59 439 aaPredicted RBP16.83■□□□□ 0.28
RNF4-215ENST00000511843 DNAJC5GQ8N7S2 189 aa16.83■□□□□ 0.28
RNF4-215ENST00000511843 SUCLG2Q96I99 432 aa16.83■□□□□ 0.28
RNF4-215ENST00000511843 TRPM7Q96QT4 1865 aa16.82■□□□□ 0.28
RNF4-215ENST00000511843 PTPRCP08575 1304 aa16.82■□□□□ 0.28
RNF4-215ENST00000511843 NBPF7P0C2Y1 421 aaPredicted RBP16.82■□□□□ 0.28
RNF4-215ENST00000511843 HNRNPUQ00839 825 aaKnown RBP eCLIP16.82■□□□□ 0.28
RNF4-215ENST00000511843 TNIP1Q15025 636 aa16.82■□□□□ 0.28
RNF4-215ENST00000511843 ALDH1L2Q3SY69 923 aa16.82■□□□□ 0.28
RNF4-215ENST00000511843 ANKRD18BA2A2Z9 1011 aa16.81■□□□□ 0.28
RNF4-215ENST00000511843 G3V3G9 751 aa16.81■□□□□ 0.28
RNF4-215ENST00000511843 ITGBL1O95965 494 aaPredicted RBP16.81■□□□□ 0.28
RNF4-215ENST00000511843 ATP2B4P23634 1241 aa16.81■□□□□ 0.28
RNF4-215ENST00000511843 KLRK1P26718 216 aa16.81■□□□□ 0.28
RNF4-215ENST00000511843 CCT4P50991 539 aaKnown RBP16.81■□□□□ 0.28
RNF4-215ENST00000511843 IFIT5Q13325 482 aaKnown RBP16.81■□□□□ 0.28
RNF4-215ENST00000511843 DCAF8Q5TAQ9 597 aa16.81■□□□□ 0.28
RNF4-215ENST00000511843 KAZALD1Q96I82 304 aa16.81■□□□□ 0.28
RNF4-215ENST00000511843 ZNF594Q96JF6 807 aaPredicted RBP16.81■□□□□ 0.28
RNF4-215ENST00000511843 MPHOSPH8Q99549 860 aa16.81■□□□□ 0.28
RNF4-215ENST00000511843 SNAP23O00161 211 aa16.8■□□□□ 0.28
RNF4-215ENST00000511843 FMR1Q06787 632 aaKnown RBP eCLIP16.8■□□□□ 0.28
RNF4-215ENST00000511843 TXNRD3Q86VQ6 643 aa16.8■□□□□ 0.28
RNF4-215ENST00000511843 HELBQ8NG08 1087 aaPredicted RBP16.8■□□□□ 0.28
RNF4-215ENST00000511843 TRPM4Q8TD43 1214 aa16.8■□□□□ 0.28
RNF4-215ENST00000511843 ADARB2Q9NS39 739 aaKnown RBP16.8■□□□□ 0.28
RNF4-215ENST00000511843 PASKQ96RG2 1323 aa16.79■□□□□ 0.28
RNF4-215ENST00000511843 CHRNDQ07001 517 aa16.79■□□□□ 0.28
RNF4-215ENST00000511843 MICALL2Q8IY33 904 aa16.79■□□□□ 0.28
RNF4-215ENST00000511843 CNTROBQ8N137 903 aa16.79■□□□□ 0.28
RNF4-215ENST00000511843 CNOT7Q9UIV1 285 aaKnown RBP16.79■□□□□ 0.28
RNF4-215ENST00000511843 NOB1Q9ULX3 412 aaKnown RBP16.79■□□□□ 0.28
RNF4-215ENST00000511843 MED23Q9ULK4 1368 aa16.78■□□□□ 0.28
RNF4-215ENST00000511843 UTYO14607 1347 aa16.78■□□□□ 0.28
RNF4-215ENST00000511843 TAF5LO75529 589 aa16.78■□□□□ 0.28
RNF4-215ENST00000511843 EGFRP00533 1210 aa16.78■□□□□ 0.28
RNF4-215ENST00000511843 RARSP54136 660 aaKnown RBP16.78■□□□□ 0.28
RNF4-215ENST00000511843 HIRAP54198 1017 aaPredicted RBP16.78■□□□□ 0.28
RNF4-215ENST00000511843 CCDC57Q2TAC2 916 aa16.78■□□□□ 0.28
RNF4-215ENST00000511843 USP50Q70EL3 339 aaPredicted RBP16.78■□□□□ 0.28
RNF4-215ENST00000511843 BICC1Q9H694 974 aaKnown RBP16.78■□□□□ 0.28
RNF4-215ENST00000511843 ZNF804BA4D1E1 1349 aa16.77■□□□□ 0.28
RNF4-215ENST00000511843 TRAF5O00463 557 aa16.77■□□□□ 0.28
RNF4-215ENST00000511843 TAF7LQ5H9L4 462 aa16.77■□□□□ 0.28
RNF4-215ENST00000511843 SAMD7Q7Z3H4 446 aa16.77■□□□□ 0.28
RNF4-215ENST00000511843 KLRG1Q96E93 195 aa16.77■□□□□ 0.28
RNF4-215ENST00000511843 PLIN1O60240 522 aa16.76■□□□□ 0.27
RNF4-215ENST00000511843 VIL1P09327 827 aaKnown RBP16.76■□□□□ 0.27
RNF4-215ENST00000511843 CT47B1P0C2W7 299 aaPredicted RBP16.76■□□□□ 0.27
RNF4-215ENST00000511843 TBC1D10BQ4KMP7 808 aaPredicted RBP16.76■□□□□ 0.27
RNF4-215ENST00000511843 ANKRD44Q8N8A2 993 aa16.76■□□□□ 0.27
RNF4-215ENST00000511843 PUS3Q9BZE2 481 aaKnown RBP16.76■□□□□ 0.27
RNF4-215ENST00000511843 ANKRD2Q9GZV1 360 aa16.76■□□□□ 0.27
RNF4-215ENST00000511843 USP44Q9H0E7 712 aa16.76■□□□□ 0.27
RNF4-215ENST00000511843 KCNJ4P48050 445 aa16.75■□□□□ 0.27
RNF4-215ENST00000511843 RBM26Q5T8P6 1007 aaKnown RBP16.75■□□□□ 0.27
RNF4-215ENST00000511843 FBXW7Q969H0 707 aa16.75■□□□□ 0.27
RNF4-215ENST00000511843 MXD3Q9BW11 206 aa16.75■□□□□ 0.27
RNF4-215ENST00000511843 CREBZFQ9NS37 354 aa16.75■□□□□ 0.27
RNF4-215ENST00000511843 MKRN1Q9UHC7 482 aaKnown RBP16.75■□□□□ 0.27
RNF4-215ENST00000511843 LEMD3Q9Y2U8 911 aa16.75■□□□□ 0.27
RNF4-215ENST00000511843 H7C1D1 291 aa16.74■□□□□ 0.27
RNF4-215ENST00000511843 LDHAL6AQ6ZMR3 332 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms