RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 VPS72Q15906 364 aa11.69□□□□□ -0.54
USP53-207ENST00000510852 ZNF530Q6P9A1 599 aaPredicted RBP11.69□□□□□ -0.54
USP53-207ENST00000510852 AFF2P51816 1311 aa11.69□□□□□ -0.54
USP53-207ENST00000510852 PLEKHG2Q9H7P9 1386 aa11.69□□□□□ -0.54
USP53-207ENST00000510852 OVOS2A0A0G2JMS6 1433 aa11.69□□□□□ -0.54
USP53-207ENST00000510852 GNAT3A8MTJ3 354 aa11.68□□□□□ -0.54
USP53-207ENST00000510852 IPO8O15397 1037 aaKnown RBP11.68□□□□□ -0.54
USP53-207ENST00000510852 FGAP02671 866 aa11.68□□□□□ -0.54
USP53-207ENST00000510852 FLT3P36888 993 aa11.68□□□□□ -0.54
USP53-207ENST00000510852 DCTN1Q14203 1278 aa11.68□□□□□ -0.54
USP53-207ENST00000510852 LONRF1Q17RB8 773 aa11.68□□□□□ -0.54
USP53-207ENST00000510852 ZSCAN30Q86W11 494 aa11.68□□□□□ -0.54
USP53-207ENST00000510852 SLC39A13Q96H72 371 aa11.68□□□□□ -0.54
USP53-207ENST00000510852 AGBL1Q96MI9 1066 aa11.68□□□□□ -0.54
USP53-207ENST00000510852 THUMPD2Q9BTF0 503 aaKnown RBP11.68□□□□□ -0.54
USP53-207ENST00000510852 SEZ6LQ9BYH1 1024 aa11.68□□□□□ -0.54
USP53-207ENST00000510852 SPG7Q9UQ90 795 aa11.68□□□□□ -0.54
USP53-207ENST00000510852 MRPL42Q9Y6G3 142 aaKnown RBP11.68□□□□□ -0.54
USP53-207ENST00000510852 RAD51AP2Q09MP3 1159 aa11.68□□□□□ -0.54
USP53-207ENST00000510852 TBC1D10BQ4KMP7 808 aaPredicted RBP11.68□□□□□ -0.54
USP53-207ENST00000510852 CCDC174Q6PII3 467 aa11.68□□□□□ -0.54
USP53-207ENST00000510852 ADAMTS19Q8TE59 1207 aa11.68□□□□□ -0.54
USP53-207ENST00000510852 RTF1Q92541 710 aaKnown RBP11.68□□□□□ -0.54
USP53-207ENST00000510852 CXorf56Q9H5V9 222 aa11.68□□□□□ -0.54
USP53-207ENST00000510852 THRAP3Q9Y2W1 955 aaKnown RBP11.68□□□□□ -0.54
USP53-207ENST00000510852 MAP3K5Q99683 1374 aa11.68□□□□□ -0.54
USP53-207ENST00000510852 HTATSF1O43719 755 aaKnown RBP11.67□□□□□ -0.54
USP53-207ENST00000510852 AKAP4Q5JQC9 854 aa11.67□□□□□ -0.54
USP53-207ENST00000510852 RNF187Q5TA31 235 aaPredicted RBP11.67□□□□□ -0.54
USP53-207ENST00000510852 MCM10Q7L590 875 aa11.67□□□□□ -0.54
USP53-207ENST00000510852 CWC25Q9NXE8 425 aaPredicted RBP11.67□□□□□ -0.54
USP53-207ENST00000510852 MAN1A1P33908 653 aa11.67□□□□□ -0.54
USP53-207ENST00000510852 SLFN5Q08AF3 891 aa11.67□□□□□ -0.54
USP53-207ENST00000510852 SH3D19Q5HYK7 790 aa11.67□□□□□ -0.54
USP53-207ENST00000510852 C1orf141Q5JVX7 400 aa11.67□□□□□ -0.54
USP53-207ENST00000510852 HSCBQ8IWL3 235 aa11.67□□□□□ -0.54
USP53-207ENST00000510852 TTF2Q9UNY4 1162 aaKnown RBP11.67□□□□□ -0.54
USP53-207ENST00000510852 SMC3Q9UQE7 1217 aa11.67□□□□□ -0.54
USP53-207ENST00000510852 DISP2A7MBM2 1401 aa11.67□□□□□ -0.54
USP53-207ENST00000510852 SVIPQ8NHG7 77 aa11.66□□□□□ -0.54
USP53-207ENST00000510852 BACH2Q9BYV9 841 aa11.66□□□□□ -0.54
USP53-207ENST00000510852 SKAP1Q86WV1 359 aa11.66□□□□□ -0.54
USP53-207ENST00000510852 RNF217Q8TC41 542 aa11.66□□□□□ -0.54
USP53-207ENST00000510852 TINF2Q9BSI4 451 aa11.66□□□□□ -0.54
USP53-207ENST00000510852 ZHX3Q9H4I2 956 aa11.66□□□□□ -0.54
USP53-207ENST00000510852 IL16Q14005 1332 aa11.65□□□□□ -0.54
USP53-207ENST00000510852 CYP27B1O15528 508 aa11.65□□□□□ -0.54
USP53-207ENST00000510852 PHKG2P15735 406 aa11.65□□□□□ -0.54
USP53-207ENST00000510852 IL17REQ8NFR9 667 aa11.65□□□□□ -0.54
USP53-207ENST00000510852 DLG5Q8TDM6 1919 aa11.65□□□□□ -0.54
USP53-207ENST00000510852 DYTNA2CJ06 578 aa11.65□□□□□ -0.55
USP53-207ENST00000510852 HIP1RO75146 1068 aa11.65□□□□□ -0.55
USP53-207ENST00000510852 MPRIPQ6WCQ1 1025 aa11.65□□□□□ -0.55
USP53-207ENST00000510852 TRMT2AQ8IZ69 625 aaKnown RBP11.65□□□□□ -0.55
USP53-207ENST00000510852 IFNL2Q8IZJ0 200 aa11.65□□□□□ -0.55
USP53-207ENST00000510852 PARP4Q9UKK3 1724 aaKnown RBP11.64□□□□□ -0.55
USP53-207ENST00000510852 PCDH11XQ9BZA7 1347 aa11.64□□□□□ -0.55
USP53-207ENST00000510852 PCDH11YQ9BZA8 1340 aa11.64□□□□□ -0.55
USP53-207ENST00000510852 PPP1R12AO14974 1030 aaPredicted RBP11.64□□□□□ -0.55
USP53-207ENST00000510852 NAT1P18440 290 aa11.64□□□□□ -0.55
USP53-207ENST00000510852 RRM1P23921 792 aa11.64□□□□□ -0.55
USP53-207ENST00000510852 DUSP27Q5VZP5 1158 aa11.64□□□□□ -0.55
USP53-207ENST00000510852 CASS4Q9NQ75 786 aa11.64□□□□□ -0.55
USP53-207ENST00000510852 POU5F1BQ06416 359 aa11.64□□□□□ -0.55
USP53-207ENST00000510852 TTLL12Q14166 644 aaPredicted RBP11.64□□□□□ -0.55
USP53-207ENST00000510852 FAM98CQ17RN3 349 aaKnown RBP11.64□□□□□ -0.55
USP53-207ENST00000510852 LGR6Q9HBX8 967 aa11.64□□□□□ -0.55
USP53-207ENST00000510852 TRPC5Q9UL62 973 aaPredicted RBP11.64□□□□□ -0.55
USP53-207ENST00000510852 PKD1L3Q7Z443 1732 aa11.64□□□□□ -0.55
USP53-207ENST00000510852 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.64□□□□□ -0.55
USP53-207ENST00000510852 ZNF746Q6NUN9 644 aaPredicted RBP11.63□□□□□ -0.55
USP53-207ENST00000510852 KANK3Q6NY19 840 aa11.63□□□□□ -0.55
USP53-207ENST00000510852 DDX54Q8TDD1 881 aaKnown RBP11.63□□□□□ -0.55
USP53-207ENST00000510852 GJD4Q96KN9 370 aaPredicted RBP11.63□□□□□ -0.55
USP53-207ENST00000510852 ARPC5LQ9BPX5 153 aa11.63□□□□□ -0.55
USP53-207ENST00000510852 ATRNO75882 1429 aa11.63□□□□□ -0.55
USP53-207ENST00000510852 RNMTO43148 476 aaKnown RBP11.62□□□□□ -0.55
USP53-207ENST00000510852 PSMD2Q13200 908 aa11.62□□□□□ -0.55
USP53-207ENST00000510852 LARP1BQ659C4 914 aaKnown RBP11.62□□□□□ -0.55
USP53-207ENST00000510852 PHLDB3Q6NSJ2 640 aa11.62□□□□□ -0.55
USP53-207ENST00000510852 TSR2Q969E8 191 aaKnown RBP11.62□□□□□ -0.55
USP53-207ENST00000510852 CHST12Q9NRB3 414 aa11.62□□□□□ -0.55
USP53-207ENST00000510852 CEMIPQ8WUJ3 1361 aa11.62□□□□□ -0.55
USP53-207ENST00000510852 ZNF853P0CG23 659 aa11.62□□□□□ -0.55
USP53-207ENST00000510852 ATP2B1P20020 1258 aa11.62□□□□□ -0.55
USP53-207ENST00000510852 GNAI1P63096 354 aa11.62□□□□□ -0.55
USP53-207ENST00000510852 TAF3Q5VWG9 929 aa11.62□□□□□ -0.55
USP53-207ENST00000510852 RETREG1Q9H6L5 497 aa11.62□□□□□ -0.55
USP53-207ENST00000510852 U3KPZ7 1027 aaPredicted RBP11.62□□□□□ -0.55
USP53-207ENST00000510852 HSP90AB1P08238 724 aaKnown RBP11.61□□□□□ -0.55
USP53-207ENST00000510852 YY1AP1Q9H869 796 aa11.61□□□□□ -0.55
USP53-207ENST00000510852 GEMIN8Q9NWZ8 242 aaKnown RBP11.61□□□□□ -0.55
USP53-207ENST00000510852 FANCIQ9NVI1 1328 aa11.61□□□□□ -0.55
USP53-207ENST00000510852 LMNB1P20700 586 aa11.61□□□□□ -0.55
USP53-207ENST00000510852 PEX19P40855 299 aa11.61□□□□□ -0.55
USP53-207ENST00000510852 PSMC1P62191 440 aaKnown RBP11.61□□□□□ -0.55
USP53-207ENST00000510852 SATB1Q01826 763 aa11.61□□□□□ -0.55
USP53-207ENST00000510852 MAPRE1Q15691 268 aaKnown RBP11.61□□□□□ -0.55
USP53-207ENST00000510852 DDB1Q16531 1140 aa11.61□□□□□ -0.55
USP53-207ENST00000510852 NYAP1Q6ZVC0 841 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms