RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 NLRP13Q86W25 1043 aa13.62□□□□□ -0.23
USP53-206ENST00000510737 GDF6Q6KF10 455 aaPredicted RBP13.61□□□□□ -0.23
USP53-206ENST00000510737 IGF2-ASQ6U949 168 aa13.61□□□□□ -0.23
USP53-206ENST00000510737 CLP1Q92989 425 aaKnown RBP13.61□□□□□ -0.23
USP53-206ENST00000510737 MEGF10Q96KG7 1140 aa13.61□□□□□ -0.23
USP53-206ENST00000510737 TRIM33Q9UPN9 1127 aa13.6□□□□□ -0.23
USP53-206ENST00000510737 ZMYND15Q9H091 742 aa13.59□□□□□ -0.23
USP53-206ENST00000510737 UBAP1LF5GYI3 381 aa13.58□□□□□ -0.24
USP53-206ENST00000510737 ZAP70P43403 619 aa13.58□□□□□ -0.24
USP53-206ENST00000510737 IL22RA1Q8N6P7 574 aa13.58□□□□□ -0.24
USP53-206ENST00000510737 GHRHP01286 108 aa13.57□□□□□ -0.24
USP53-206ENST00000510737 ADAMTSL4Q6UY14 1074 aa13.57□□□□□ -0.24
USP53-206ENST00000510737 OR13H1Q8NG92 308 aa13.57□□□□□ -0.24
USP53-206ENST00000510737 SCO2A0A1W2PP80 73 aa13.56□□□□□ -0.24
USP53-206ENST00000510737 PTCD1O75127 700 aaKnown RBP13.56□□□□□ -0.24
USP53-206ENST00000510737 SETDB1Q15047 1291 aa13.56□□□□□ -0.24
USP53-206ENST00000510737 GPR152Q8TDT2 470 aa13.56□□□□□ -0.24
USP53-206ENST00000510737 PIK3R5Q8WYR1 880 aa13.56□□□□□ -0.24
USP53-206ENST00000510737 PBXIP1Q96AQ6 731 aa13.56□□□□□ -0.24
USP53-206ENST00000510737 SEPT3Q9UH03 358 aa13.56□□□□□ -0.24
USP53-206ENST00000510737 RB1CC1Q8TDY2 1594 aa13.55□□□□□ -0.24
USP53-206ENST00000510737 ALX3O95076 343 aa13.55□□□□□ -0.24
USP53-206ENST00000510737 STIM2Q9P246 746 aa13.55□□□□□ -0.24
USP53-206ENST00000510737 ATP11AP98196 1134 aa13.54□□□□□ -0.24
USP53-206ENST00000510737 ARTNQ5T4W7 220 aa13.54□□□□□ -0.24
USP53-206ENST00000510737 KRTAP4-8Q9BYQ9 185 aa13.54□□□□□ -0.24
USP53-206ENST00000510737 CYP2E1P05181 493 aaPredicted RBP13.52□□□□□ -0.25
USP53-206ENST00000510737 SCNN1AP37088 669 aa13.52□□□□□ -0.25
USP53-206ENST00000510737 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.51□□□□□ -0.25
USP53-206ENST00000510737 ARID3CA6NKF2 412 aa13.5□□□□□ -0.25
USP53-206ENST00000510737 ATP2B4P23634 1241 aa13.5□□□□□ -0.25
USP53-206ENST00000510737 ATCAYQ86WG3 371 aa13.5□□□□□ -0.25
USP53-206ENST00000510737 DZIP1LQ8IYY4 767 aaKnown RBP13.5□□□□□ -0.25
USP53-206ENST00000510737 RBSNQ9H1K0 784 aa13.5□□□□□ -0.25
USP53-206ENST00000510737 AKTIPQ9H8T0 292 aa13.5□□□□□ -0.25
USP53-206ENST00000510737 F8W735 103 aaPredicted RBP13.49□□□□□ -0.25
USP53-206ENST00000510737 TM4SF5O14894 197 aa13.49□□□□□ -0.25
USP53-206ENST00000510737 GALNT11Q8NCW6 608 aa13.49□□□□□ -0.25
USP53-206ENST00000510737 ZFP64Q9NPA5 681 aa13.49□□□□□ -0.25
USP53-206ENST00000510737 FAM13BQ9NYF5 915 aa13.49□□□□□ -0.25
USP53-206ENST00000510737 TMEM130Q8N3G9 435 aa13.48□□□□□ -0.25
USP53-206ENST00000510737 HYAL2Q12891 473 aa13.47□□□□□ -0.25
USP53-206ENST00000510737 AGGF1Q8N302 714 aaeCLIP13.47□□□□□ -0.256e-9■■■□□ 16.6
USP53-206ENST00000510737 MRPL18Q9H0U6 180 aaKnown RBP13.47□□□□□ -0.25
USP53-206ENST00000510737 RASSF4Q9H2L5 321 aa13.47□□□□□ -0.25
USP53-206ENST00000510737 TMEM63CQ9P1W3 806 aa13.47□□□□□ -0.25
USP53-206ENST00000510737 KIF4AO95239 1232 aa13.46□□□□□ -0.25
USP53-206ENST00000510737 TXNDC11Q6PKC3 985 aa13.46□□□□□ -0.25
USP53-206ENST00000510737 PRR23CQ6ZRP0 262 aa13.46□□□□□ -0.25
USP53-206ENST00000510737 CCDC97Q96F63 343 aaPredicted RBP13.46□□□□□ -0.25
USP53-206ENST00000510737 LACRTQ9GZZ8 138 aa13.46□□□□□ -0.25
USP53-206ENST00000510737 PPME1Q9Y570 386 aa13.46□□□□□ -0.25
USP53-206ENST00000510737 LINC01387J3KSC0 135 aa13.45□□□□□ -0.26
USP53-206ENST00000510737 TTC39BQ5VTQ0 682 aaPredicted RBP13.45□□□□□ -0.26
USP53-206ENST00000510737 CEP135Q66GS9 1140 aa13.45□□□□□ -0.26
USP53-206ENST00000510737 Q6ZS46 218 aa13.45□□□□□ -0.26
USP53-206ENST00000510737 ABTB2Q8N961 1025 aa13.45□□□□□ -0.26
USP53-206ENST00000510737 NUDT16Q96DE0 195 aaKnown RBP13.45□□□□□ -0.26
USP53-206ENST00000510737 SRA1Q9HD15 236 aaKnown RBP13.45□□□□□ -0.26
USP53-206ENST00000510737 ABI2Q9NYB9 513 aaPredicted RBP13.45□□□□□ -0.26
USP53-206ENST00000510737 SERPINA10Q9UK55 444 aa13.45□□□□□ -0.26
USP53-206ENST00000510737 FNDC3AQ9Y2H6 1198 aaKnown RBP13.45□□□□□ -0.26
USP53-206ENST00000510737 WISP1O95388 367 aa13.44□□□□□ -0.26
USP53-206ENST00000510737 KCNK4Q9NYG8 393 aa13.44□□□□□ -0.26
USP53-206ENST00000510737 CNTN3Q9P232 1028 aa13.44□□□□□ -0.26
USP53-206ENST00000510737 LRP8Q14114 963 aa13.43□□□□□ -0.26
USP53-206ENST00000510737 CEP120Q8N960 986 aa13.43□□□□□ -0.26
USP53-206ENST00000510737 HYAL3O43820 417 aaPredicted RBP13.42□□□□□ -0.26
USP53-206ENST00000510737 MAP4K3Q8IVH8 894 aa13.42□□□□□ -0.26
USP53-206ENST00000510737 ELP3Q9H9T3 547 aa13.42□□□□□ -0.26
USP53-206ENST00000510737 CDC25BP30305 580 aa13.41□□□□□ -0.26
USP53-206ENST00000510737 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.41□□□□□ -0.26
USP53-206ENST00000510737 CACTIN-AS1Q8N1I8 211 aa13.4□□□□□ -0.26
USP53-206ENST00000510737 PSMG3-AS1Q96PY0 264 aa13.4□□□□□ -0.26
USP53-206ENST00000510737 PBX4Q9BYU1 374 aa13.4□□□□□ -0.26
USP53-206ENST00000510737 KANSL3Q9P2N6 904 aa13.4□□□□□ -0.26
USP53-206ENST00000510737 ACPPP15309 386 aa13.39□□□□□ -0.27
USP53-206ENST00000510737 EPHA1P21709 976 aa13.39□□□□□ -0.27
USP53-206ENST00000510737 PDE12Q6L8Q7 609 aaKnown RBP13.39□□□□□ -0.27
USP53-206ENST00000510737 HELQQ8TDG4 1101 aa13.39□□□□□ -0.27
USP53-206ENST00000510737 SPACA7Q96KW9 195 aa13.39□□□□□ -0.27
USP53-206ENST00000510737 UBL7Q96S82 380 aaPredicted RBP13.39□□□□□ -0.27
USP53-206ENST00000510737 CARD10Q9BWT7 1032 aa13.39□□□□□ -0.27
USP53-206ENST00000510737 MUC3BQ9H195 1237 aa13.39□□□□□ -0.27
USP53-206ENST00000510737 GGNBP2Q9H3C7 697 aa13.39□□□□□ -0.27
USP53-206ENST00000510737 SH2B1Q9NRF2 756 aaPredicted RBP13.39□□□□□ -0.27
USP53-206ENST00000510737 A6NHS1 94 aa13.38□□□□□ -0.27
USP53-206ENST00000510737 SMNDC1O75940 238 aaKnown RBP eCLIP13.38□□□□□ -0.27
USP53-206ENST00000510737 CDC27P30260 824 aa13.38□□□□□ -0.27
USP53-206ENST00000510737 EDEM1Q92611 657 aa13.38□□□□□ -0.27
USP53-206ENST00000510737 POP1Q99575 1024 aaKnown RBP13.38□□□□□ -0.27
USP53-206ENST00000510737 TMEM88BA6NKF7 163 aa13.37□□□□□ -0.27
USP53-206ENST00000510737 ZNF438Q7Z4V0 828 aa13.37□□□□□ -0.27
USP53-206ENST00000510737 CD68P34810 354 aaPredicted RBP13.36□□□□□ -0.27
USP53-206ENST00000510737 NCAPG2Q86XI2 1143 aa13.36□□□□□ -0.27
USP53-206ENST00000510737 C1orf127Q8N9H9 656 aa13.36□□□□□ -0.27
USP53-206ENST00000510737 SALL4Q9UJQ4 1053 aa13.36□□□□□ -0.27
USP53-206ENST00000510737 RNF112Q9ULX5 631 aa13.36□□□□□ -0.27
USP53-206ENST00000510737 GLB1P16278 677 aa13.35□□□□□ -0.27
USP53-206ENST00000510737 NFKBIEO00221 500 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms