RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 KIAA2012Q0VF49 1180 aa21.22■□□□□ 0.99
CCHCR1-228ENST00000509552 ZBTB3Q9H5J0 574 aa21.22■□□□□ 0.99
CCHCR1-228ENST00000509552 R3HCC1Q9Y3T6 440 aaKnown RBP21.22■□□□□ 0.99
CCHCR1-228ENST00000509552 EYA2O00167 538 aa21.22■□□□□ 0.99
CCHCR1-228ENST00000509552 TIMM10P62072 90 aa21.22■□□□□ 0.99
CCHCR1-228ENST00000509552 DSCC1Q9BVC3 393 aa21.22■□□□□ 0.99
CCHCR1-228ENST00000509552 NUP62CLQ9H1M0 184 aa21.22■□□□□ 0.99
CCHCR1-228ENST00000509552 ATG3Q9NT62 314 aa21.22■□□□□ 0.99
CCHCR1-228ENST00000509552 H3BQV1 296 aa21.21■□□□□ 0.99
CCHCR1-228ENST00000509552 NKX1-1Q15270 411 aaPredicted RBP21.21■□□□□ 0.99
CCHCR1-228ENST00000509552 MAP3K11Q16584 847 aa21.21■□□□□ 0.99
CCHCR1-228ENST00000509552 IFFO2Q5TF58 517 aa21.21■□□□□ 0.99
CCHCR1-228ENST00000509552 BRF1Q92994 677 aa21.21■□□□□ 0.99
CCHCR1-228ENST00000509552 JAK2O60674 1132 aa21.2■□□□□ 0.98
CCHCR1-228ENST00000509552 CIAO1O76071 339 aa21.2■□□□□ 0.98
CCHCR1-228ENST00000509552 NUP188Q5SRE5 1749 aa21.2■□□□□ 0.98
CCHCR1-228ENST00000509552 IFIT1P09914 478 aaKnown RBP21.2■□□□□ 0.98
CCHCR1-228ENST00000509552 IL2RBP14784 551 aa21.2■□□□□ 0.98
CCHCR1-228ENST00000509552 BRINP3Q76B58 766 aa21.2■□□□□ 0.98
CCHCR1-228ENST00000509552 DHX32Q7L7V1 743 aaKnown RBP21.2■□□□□ 0.98
CCHCR1-228ENST00000509552 LLPHQ9BRT6 129 aaKnown RBP21.2■□□□□ 0.98
CCHCR1-228ENST00000509552 TFIP11Q9UBB9 837 aaKnown RBP21.2■□□□□ 0.98
CCHCR1-228ENST00000509552 UBR2Q8IWV8 1755 aa21.19■□□□□ 0.98
CCHCR1-228ENST00000509552 PLCB2Q00722 1185 aa21.19■□□□□ 0.98
CCHCR1-228ENST00000509552 ZMYM1Q5SVZ6 1142 aa21.19■□□□□ 0.98
CCHCR1-228ENST00000509552 LEO1Q8WVC0 666 aaPredicted RBP21.19■□□□□ 0.98
CCHCR1-228ENST00000509552 ZSCAN16Q9H4T2 348 aaPredicted RBP21.19■□□□□ 0.98
CCHCR1-228ENST00000509552 KCPQ6ZWJ8 1503 aa21.19■□□□□ 0.98
CCHCR1-228ENST00000509552 LIG1P18858 919 aa21.18■□□□□ 0.98
CCHCR1-228ENST00000509552 LRRC24Q50LG9 513 aa21.18■□□□□ 0.98
CCHCR1-228ENST00000509552 A0A1B0GUL7 405 aa21.18■□□□□ 0.98
CCHCR1-228ENST00000509552 RRP9O43818 475 aaKnown RBP21.18■□□□□ 0.98
CCHCR1-228ENST00000509552 DDX19AQ9NUU7 478 aaKnown RBP21.18■□□□□ 0.98
CCHCR1-228ENST00000509552 PFKFB2O60825 505 aa21.17■□□□□ 0.98
CCHCR1-228ENST00000509552 HSP90AA2PQ14568 343 aaPredicted RBP21.17■□□□□ 0.98
CCHCR1-228ENST00000509552 STOX1Q6ZVD7 989 aa21.17■□□□□ 0.98
CCHCR1-228ENST00000509552 ZNF594Q96JF6 807 aaPredicted RBP21.17■□□□□ 0.98
CCHCR1-228ENST00000509552 LRRC2Q9BYS8 371 aa21.17■□□□□ 0.98
CCHCR1-228ENST00000509552 TNMDQ9H2S6 317 aa21.17■□□□□ 0.98
CCHCR1-228ENST00000509552 TJP1Q07157 1748 aa21.17■□□□□ 0.98
CCHCR1-228ENST00000509552 RNF113AO15541 343 aaKnown RBP21.17■□□□□ 0.98
CCHCR1-228ENST00000509552 SCRN1Q12765 414 aa21.17■□□□□ 0.98
CCHCR1-228ENST00000509552 LRRFIP1Q32MZ4 808 aaKnown RBP21.17■□□□□ 0.98
CCHCR1-228ENST00000509552 DACT1Q9NYF0 836 aa21.17■□□□□ 0.98
CCHCR1-228ENST00000509552 CEP126Q9P2H0 1117 aa21.17■□□□□ 0.98
CCHCR1-228ENST00000509552 KIF3AQ9Y496 699 aa21.17■□□□□ 0.98
CCHCR1-228ENST00000509552 RESTQ13127 1097 aa21.16■□□□□ 0.98
CCHCR1-228ENST00000509552 CAMK4Q16566 473 aa21.16■□□□□ 0.98
CCHCR1-228ENST00000509552 CCDC57Q2TAC2 916 aa21.16■□□□□ 0.98
CCHCR1-228ENST00000509552 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.16■□□□□ 0.98
CCHCR1-228ENST00000509552 DDX11Q96FC9 970 aa21.16■□□□□ 0.98
CCHCR1-228ENST00000509552 CARD10Q9BWT7 1032 aa21.16■□□□□ 0.98
CCHCR1-228ENST00000509552 CFAP45Q9UL16 551 aa21.16■□□□□ 0.98
CCHCR1-228ENST00000509552 COL5A2P05997 1499 aaPredicted RBP21.16■□□□□ 0.98
CCHCR1-228ENST00000509552 SMARCC2Q8TAQ2 1214 aa21.16■□□□□ 0.98
CCHCR1-228ENST00000509552 FAM200AQ8TCP9 573 aa21.16■□□□□ 0.98
CCHCR1-228ENST00000509552 HSPD1P10809 573 aaKnown RBP21.15■□□□□ 0.98
CCHCR1-228ENST00000509552 HMGN5P82970 282 aaKnown RBP21.15■□□□□ 0.98
CCHCR1-228ENST00000509552 TYRO3Q06418 890 aa21.15■□□□□ 0.98
CCHCR1-228ENST00000509552 CCDC158Q5M9N0 1113 aa21.15■□□□□ 0.98
CCHCR1-228ENST00000509552 BICD2Q8TD16 824 aa21.15■□□□□ 0.98
CCHCR1-228ENST00000509552 PAPPAQ13219 1627 aa21.14■□□□□ 0.98
CCHCR1-228ENST00000509552 MPNDQ8N594 471 aa21.14■□□□□ 0.97
CCHCR1-228ENST00000509552 CHMP4CQ96CF2 233 aa21.14■□□□□ 0.97
CCHCR1-228ENST00000509552 ISCA1Q9BUE6 129 aa21.14■□□□□ 0.97
CCHCR1-228ENST00000509552 AKAP2Q9Y2D5 859 aa21.14■□□□□ 0.97
CCHCR1-228ENST00000509552 E7EWF7 191 aa21.13■□□□□ 0.97
CCHCR1-228ENST00000509552 EXOSC10Q01780 885 aaKnown RBP21.13■□□□□ 0.97
CCHCR1-228ENST00000509552 TCIRG1Q13488 830 aa21.13■□□□□ 0.97
CCHCR1-228ENST00000509552 SLFNL1Q499Z3 407 aa21.13■□□□□ 0.97
CCHCR1-228ENST00000509552 GORABQ5T7V8 394 aa21.13■□□□□ 0.97
CCHCR1-228ENST00000509552 PIBF1Q8WXW3 757 aa21.13■□□□□ 0.97
CCHCR1-228ENST00000509552 PUS3Q9BZE2 481 aaKnown RBP21.13■□□□□ 0.97
CCHCR1-228ENST00000509552 FBXO3Q9UK99 471 aa21.13■□□□□ 0.97
CCHCR1-228ENST00000509552 MAST3O60307 1309 aa21.13■□□□□ 0.97
CCHCR1-228ENST00000509552 TNS2Q63HR2 1409 aa21.13■□□□□ 0.97
CCHCR1-228ENST00000509552 TPM3P06753 285 aa21.13■□□□□ 0.97
CCHCR1-228ENST00000509552 ZNF830Q96NB3 372 aaPredicted RBP21.13■□□□□ 0.97
CCHCR1-228ENST00000509552 AGXT2Q9BYV1 514 aa21.13■□□□□ 0.97
CCHCR1-228ENST00000509552 CLSTN2Q9H4D0 955 aa21.13■□□□□ 0.97
CCHCR1-228ENST00000509552 SPEF2Q9C093 1822 aa21.13■□□□□ 0.97
CCHCR1-228ENST00000509552 APOBRQ0VD83 1088 aa21.12■□□□□ 0.97
CCHCR1-228ENST00000509552 NAA16Q6N069 864 aaPredicted RBP21.12■□□□□ 0.97
CCHCR1-228ENST00000509552 NSUN7Q8NE18 718 aaKnown RBP21.12■□□□□ 0.97
CCHCR1-228ENST00000509552 MRVI1Q9Y6F6 885 aa21.12■□□□□ 0.97
CCHCR1-228ENST00000509552 EVA1CP58658 441 aa21.12■□□□□ 0.97
CCHCR1-228ENST00000509552 TTC39AQ5SRH9 613 aa21.12■□□□□ 0.97
CCHCR1-228ENST00000509552 SASS6Q6UVJ0 657 aa21.12■□□□□ 0.97
CCHCR1-228ENST00000509552 CKAP2LQ8IYA6 745 aa21.12■□□□□ 0.97
CCHCR1-228ENST00000509552 TTC12Q9H892 705 aaPredicted RBP21.12■□□□□ 0.97
CCHCR1-228ENST00000509552 TMOD3Q9NYL9 352 aa21.12■□□□□ 0.97
CCHCR1-228ENST00000509552 ZNF330Q9Y3S2 320 aaPredicted RBP21.12■□□□□ 0.97
CCHCR1-228ENST00000509552 GOLGA6L6A8MZA4 724 aa21.11■□□□□ 0.97
CCHCR1-228ENST00000509552 FKBP4Q02790 459 aaKnown RBP eCLIP21.11■□□□□ 0.97
CCHCR1-228ENST00000509552 STRN4Q9NRL3 753 aa21.11■□□□□ 0.97
CCHCR1-228ENST00000509552 SOS2Q07890 1332 aaPredicted RBP21.11■□□□□ 0.97
CCHCR1-228ENST00000509552 PTPDC1A2A3K4 754 aa21.11■□□□□ 0.97
CCHCR1-228ENST00000509552 DNTTIP2Q5QJE6 756 aaKnown RBP21.11■□□□□ 0.97
CCHCR1-228ENST00000509552 KIF6Q6ZMV9 814 aa21.11■□□□□ 0.97
CCHCR1-228ENST00000509552 PGBD1Q96JS3 809 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms