RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 KIF3AQ9Y496 699 aa10.9□□□□□ -0.66
PDGFRA-208ENST00000509490 ABCC12Q96J65 1359 aa10.9□□□□□ -0.66
PDGFRA-208ENST00000509490 SNRPA1P09661 255 aaKnown RBP10.9□□□□□ -0.66
PDGFRA-208ENST00000509490 RIC3Q7Z5B4 369 aa10.9□□□□□ -0.66
PDGFRA-208ENST00000509490 MRFAP1L1Q96HT8 127 aa10.9□□□□□ -0.66
PDGFRA-208ENST00000509490 LARP6Q9BRS8 491 aaKnown RBP10.9□□□□□ -0.66
PDGFRA-208ENST00000509490 PYCARDQ9ULZ3 195 aa10.9□□□□□ -0.66
PDGFRA-208ENST00000509490 AXIN2Q9Y2T1 843 aa10.9□□□□□ -0.66
PDGFRA-208ENST00000509490 COL9A3Q14050 684 aaPredicted RBP10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 ZMYND15Q9H091 742 aa10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 DACT1Q9NYF0 836 aa10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 TAF6LQ9Y6J9 622 aa10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 CPDO75976 1380 aa10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 H7C1W4 665 aa10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 RBM10P98175 930 aaKnown RBP10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 IQCB1Q15051 598 aa10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 ANKRD13DQ6ZTN6 518 aa10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 XAGE3Q8WTP9 111 aa10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 DCAF5Q96JK2 942 aa10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 RBM6P78332 1123 aaKnown RBP10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 UTP14CQ5TAP6 766 aaKnown RBP10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 VSIG10Q8N0Z9 540 aa10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 PLBD2Q8NHP8 589 aa10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 ZNF830Q96NB3 372 aaPredicted RBP10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 FBXO3Q9UK99 471 aa10.89□□□□□ -0.67
PDGFRA-208ENST00000509490 CIAO1O76071 339 aa10.88□□□□□ -0.67
PDGFRA-208ENST00000509490 CYP21A2P08686 494 aa10.88□□□□□ -0.67
PDGFRA-208ENST00000509490 DHX32Q7L7V1 743 aaKnown RBP10.88□□□□□ -0.67
PDGFRA-208ENST00000509490 IFNL2Q8IZJ0 200 aa10.88□□□□□ -0.67
PDGFRA-208ENST00000509490 ZNF274Q96GC6 653 aaPredicted RBP10.88□□□□□ -0.67
PDGFRA-208ENST00000509490 WDR19Q8NEZ3 1342 aa10.88□□□□□ -0.67
PDGFRA-208ENST00000509490 ANO6Q4KMQ2 910 aa10.88□□□□□ -0.67
PDGFRA-208ENST00000509490 ZMYM1Q5SVZ6 1142 aa10.88□□□□□ -0.67
PDGFRA-208ENST00000509490 COPS6Q7L5N1 327 aa10.88□□□□□ -0.67
PDGFRA-208ENST00000509490 NSUN7Q8NE18 718 aaKnown RBP10.88□□□□□ -0.67
PDGFRA-208ENST00000509490 ENGASEQ8NFI3 743 aa10.88□□□□□ -0.67
PDGFRA-208ENST00000509490 BRF1Q92994 677 aa10.87□□□□□ -0.67
PDGFRA-208ENST00000509490 KCPQ6ZWJ8 1503 aa10.87□□□□□ -0.67
PDGFRA-208ENST00000509490 FOXO4P98177 505 aa10.87□□□□□ -0.67
PDGFRA-208ENST00000509490 SCRN1Q12765 414 aa10.87□□□□□ -0.67
PDGFRA-208ENST00000509490 TFCP2Q12800 502 aa10.87□□□□□ -0.67
PDGFRA-208ENST00000509490 DHX8Q14562 1220 aaKnown RBP10.87□□□□□ -0.67
PDGFRA-208ENST00000509490 MYD88Q99836 296 aa10.87□□□□□ -0.67
PDGFRA-208ENST00000509490 BPIFA3Q9BQP9 254 aa10.87□□□□□ -0.67
PDGFRA-208ENST00000509490 NWD2Q9ULI1 1742 aa10.87□□□□□ -0.67
PDGFRA-208ENST00000509490 TNS2Q63HR2 1409 aa10.87□□□□□ -0.67
PDGFRA-208ENST00000509490 A0A1W2PQ27 194 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 A0A1W2PQ64 194 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 A0A1W2PQD8 194 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 SMTNL1A8MU46 457 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 TATP17735 454 aaPredicted RBP10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 CHAF1AQ13111 956 aaPredicted RBP10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 ZSCAN25Q6NSZ9 544 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 Q6ZUG5 572 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 KRT28Q7Z3Y7 464 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 FMNL2Q96PY5 1086 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 PAXBP1Q9Y5B6 917 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 NR1I2O75469 434 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 CTDNEP1O95476 244 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 KCNJ6P48051 423 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 STOX1Q6ZVD7 989 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 RAPGEF4Q8WZA2 1011 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 ZNF496Q96IT1 587 aaPredicted RBP10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 GOLGA6L4A6NEF3 574 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 ZNF165P49910 485 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 SNW1Q13573 536 aaKnown RBP10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 STX1AQ16623 288 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 ATG9AQ7Z3C6 839 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 LUZP1Q86V48 1076 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 ZNF396Q96N95 335 aaPredicted RBP10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 ORAI2Q96SN7 254 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 BCL2L12Q9HB09 334 aa10.86□□□□□ -0.67
PDGFRA-208ENST00000509490 JAK2O60674 1132 aa10.85□□□□□ -0.67
PDGFRA-208ENST00000509490 IL15P40933 162 aaPredicted RBP10.85□□□□□ -0.67
PDGFRA-208ENST00000509490 DNTTIP2Q5QJE6 756 aaKnown RBP10.85□□□□□ -0.67
PDGFRA-208ENST00000509490 DHX37Q8IY37 1157 aaKnown RBP10.85□□□□□ -0.67
PDGFRA-208ENST00000509490 PRDM4Q9UKN5 801 aa10.85□□□□□ -0.67
PDGFRA-208ENST00000509490 PTGS1P23219 599 aa10.85□□□□□ -0.67
PDGFRA-208ENST00000509490 FERMT3Q86UX7 667 aa10.85□□□□□ -0.67
PDGFRA-208ENST00000509490 C4AP0C0L4 1744 aa10.85□□□□□ -0.67
PDGFRA-208ENST00000509490 C4BP0C0L5 1744 aa10.85□□□□□ -0.67
PDGFRA-208ENST00000509490 SHANK3Q9BYB0 1731 aa10.84□□□□□ -0.67
PDGFRA-208ENST00000509490 RIOK3O14730 519 aaKnown RBP10.84□□□□□ -0.67
PDGFRA-208ENST00000509490 FEZ1Q99689 392 aa10.84□□□□□ -0.67
PDGFRA-208ENST00000509490 DBNDD2Q9BQY9 259 aa10.84□□□□□ -0.67
PDGFRA-208ENST00000509490 RTEL1Q9NZ71 1219 aa10.84□□□□□ -0.67
PDGFRA-208ENST00000509490 FAM160A1Q05DH4 1040 aa10.84□□□□□ -0.67
PDGFRA-208ENST00000509490 FAM173BQ6P4H8 233 aa10.84□□□□□ -0.67
PDGFRA-208ENST00000509490 MYH7P12883 1935 aa10.83□□□□□ -0.67
PDGFRA-208ENST00000509490 COL22A1Q8NFW1 1626 aaPredicted RBP10.83□□□□□ -0.68
PDGFRA-208ENST00000509490 ZBTB22O15209 634 aa10.83□□□□□ -0.68
PDGFRA-208ENST00000509490 CCDC186Q7Z3E2 898 aa10.83□□□□□ -0.68
PDGFRA-208ENST00000509490 C17orf53Q8N3J3 647 aaPredicted RBP10.83□□□□□ -0.68
PDGFRA-208ENST00000509490 SIL1Q9H173 461 aa10.83□□□□□ -0.68
PDGFRA-208ENST00000509490 CARMIL3Q8ND23 1372 aa10.83□□□□□ -0.68
PDGFRA-208ENST00000509490 ATRNO75882 1429 aa10.83□□□□□ -0.68
PDGFRA-208ENST00000509490 TNS3Q68CZ2 1445 aa10.83□□□□□ -0.68
PDGFRA-208ENST00000509490 AIMP1Q12904 312 aaKnown RBP10.83□□□□□ -0.68
PDGFRA-208ENST00000509490 NFATC2IPQ8NCF5 419 aa10.83□□□□□ -0.68
PDGFRA-208ENST00000509490 KLHDC4Q8TBB5 520 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms