RNA–Protein interactions for RNA: ENST00000509388.5

RNF4-213, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-213ENST00000509388 IL15P40933 162 aaPredicted RBP18.39■□□□□ 0.53
RNF4-213ENST00000509388 METTL24Q5JXM2 366 aa18.39■□□□□ 0.53
RNF4-213ENST00000509388 DPP8Q6V1X1 898 aaPredicted RBP18.39■□□□□ 0.53
RNF4-213ENST00000509388 ARHGAP27Q6ZUM4 889 aa18.39■□□□□ 0.53
RNF4-213ENST00000509388 MPNDQ8N594 471 aa18.39■□□□□ 0.53
RNF4-213ENST00000509388 CIAO1O76071 339 aa18.38■□□□□ 0.53
RNF4-213ENST00000509388 KCNJ4P48050 445 aa18.38■□□□□ 0.53
RNF4-213ENST00000509388 CHRNDQ07001 517 aa18.38■□□□□ 0.53
RNF4-213ENST00000509388 LRRC24Q50LG9 513 aa18.38■□□□□ 0.53
RNF4-213ENST00000509388 HSP90AB4PQ58FF6 505 aa18.38■□□□□ 0.53
RNF4-213ENST00000509388 OLFM4Q6UX06 510 aa18.38■□□□□ 0.53
RNF4-213ENST00000509388 SIRT2Q8IXJ6 389 aa18.38■□□□□ 0.53
RNF4-213ENST00000509388 RWDD1Q9H446 243 aaPredicted RBP18.38■□□□□ 0.53
RNF4-213ENST00000509388 MYH3P11055 1940 aa18.38■□□□□ 0.53
RNF4-213ENST00000509388 MROH5Q6ZUA9 1318 aa18.38■□□□□ 0.53
RNF4-213ENST00000509388 YBX3P16989 372 aaKnown RBP eCLIP18.37■□□□□ 0.53
RNF4-213ENST00000509388 GPSM2P81274 684 aa18.37■□□□□ 0.53
RNF4-213ENST00000509388 CEP126Q9P2H0 1117 aa18.37■□□□□ 0.53
RNF4-213ENST00000509388 RIPOR2Q9Y4F9 1068 aa18.37■□□□□ 0.53
RNF4-213ENST00000509388 KIAA1551Q9HCM1 1747 aa18.37■□□□□ 0.53
RNF4-213ENST00000509388 C6orf229H3BNL8 230 aa18.36■□□□□ 0.53
RNF4-213ENST00000509388 XDHP47989 1333 aa18.36■□□□□ 0.53
RNF4-213ENST00000509388 ERC1Q8IUD2 1116 aa18.36■□□□□ 0.53
RNF4-213ENST00000509388 SUPT20HQ8NEM7 779 aa18.36■□□□□ 0.53
RNF4-213ENST00000509388 HELBQ8NG08 1087 aaPredicted RBP18.36■□□□□ 0.53
RNF4-213ENST00000509388 GGA1Q9UJY5 639 aa18.36■□□□□ 0.53
RNF4-213ENST00000509388 TAF5LO75529 589 aa18.35■□□□□ 0.53
RNF4-213ENST00000509388 ATP2B4P23634 1241 aa18.35■□□□□ 0.53
RNF4-213ENST00000509388 TAOK3Q9H2K8 898 aa18.35■□□□□ 0.53
RNF4-213ENST00000509388 EXOC6BQ9Y2D4 811 aa18.35■□□□□ 0.53
RNF4-213ENST00000509388 NOP58Q9Y2X3 529 aaKnown RBP18.35■□□□□ 0.53
RNF4-213ENST00000509388 DLEC1Q9Y238 1755 aa18.35■□□□□ 0.53
RNF4-213ENST00000509388 APBB1O00213 710 aa18.34■□□□□ 0.53
RNF4-213ENST00000509388 UFL1O94874 794 aa18.34■□□□□ 0.53
RNF4-213ENST00000509388 HDAC1Q13547 482 aaPredicted RBP18.34■□□□□ 0.53
RNF4-213ENST00000509388 ATG9AQ7Z3C6 839 aa18.34■□□□□ 0.53
RNF4-213ENST00000509388 EYA3Q99504 573 aa18.34■□□□□ 0.53
RNF4-213ENST00000509388 PODXL2Q9NZ53 605 aa18.34■□□□□ 0.53
RNF4-213ENST00000509388 LEMD3Q9Y2U8 911 aa18.34■□□□□ 0.53
RNF4-213ENST00000509388 SLX4Q8IY92 1834 aa18.33■□□□□ 0.53
RNF4-213ENST00000509388 RAB11FIP3O75154 756 aa18.33■□□□□ 0.52
RNF4-213ENST00000509388 PDE8BO95263 885 aa18.33■□□□□ 0.52
RNF4-213ENST00000509388 FKBP4Q02790 459 aaKnown RBP eCLIP18.33■□□□□ 0.52
RNF4-213ENST00000509388 ERICH6BQ5W0A0 696 aa18.33■□□□□ 0.52
RNF4-213ENST00000509388 SLC51AQ86UW1 340 aa18.33■□□□□ 0.52
RNF4-213ENST00000509388 ZBTB47Q9UFB7 747 aaPredicted RBP18.33■□□□□ 0.52
RNF4-213ENST00000509388 ZNF804BA4D1E1 1349 aa18.32■□□□□ 0.52
RNF4-213ENST00000509388 TBC1D16Q8TBP0 767 aa18.32■□□□□ 0.52
RNF4-213ENST00000509388 PSMD1Q99460 953 aa18.32■□□□□ 0.52
RNF4-213ENST00000509388 DCTPP1Q9H773 170 aa18.32■□□□□ 0.52
RNF4-213ENST00000509388 AKAP2Q9Y2D5 859 aa18.32■□□□□ 0.52
RNF4-213ENST00000509388 G3V3G9 751 aa18.31■□□□□ 0.52
RNF4-213ENST00000509388 TFCP2Q12800 502 aa18.31■□□□□ 0.52
RNF4-213ENST00000509388 PUM3Q15397 648 aaKnown RBP18.31■□□□□ 0.52
RNF4-213ENST00000509388 DCAF8Q5TAQ9 597 aa18.31■□□□□ 0.52
RNF4-213ENST00000509388 ZC3H12CQ9C0D7 883 aaKnown RBP18.31■□□□□ 0.52
RNF4-213ENST00000509388 BCL11AQ9H165 835 aa18.31■□□□□ 0.52
RNF4-213ENST00000509388 POLLQ9UGP5 575 aa18.31■□□□□ 0.52
RNF4-213ENST00000509388 COL4A1P02462 1669 aa18.31■□□□□ 0.52
RNF4-213ENST00000509388 TAF1P21675 1872 aa18.31■□□□□ 0.52
RNF4-213ENST00000509388 IFIT1P09914 478 aaKnown RBP18.3■□□□□ 0.52
RNF4-213ENST00000509388 UBE4AQ14139 1066 aa18.3■□□□□ 0.52
RNF4-213ENST00000509388 WASHC4Q2M389 1173 aa18.3■□□□□ 0.52
RNF4-213ENST00000509388 GCC1Q96CN9 775 aa18.3■□□□□ 0.52
RNF4-213ENST00000509388 KIF1BPQ96EK5 621 aa18.3■□□□□ 0.52
RNF4-213ENST00000509388 RTFDC1Q9BY42 306 aaPredicted RBP18.3■□□□□ 0.52
RNF4-213ENST00000509388 NFKBIEO00221 500 aa18.29■□□□□ 0.52
RNF4-213ENST00000509388 RIMBP2O15034 1052 aa18.29■□□□□ 0.52
RNF4-213ENST00000509388 PPIP5K2O43314 1243 aa18.29■□□□□ 0.52
RNF4-213ENST00000509388 SASH1O94885 1247 aa18.29■□□□□ 0.52
RNF4-213ENST00000509388 SLC5A1P13866 664 aa18.29■□□□□ 0.52
RNF4-213ENST00000509388 RASSF7Q02833 373 aa18.29■□□□□ 0.52
RNF4-213ENST00000509388 ATP2B3Q16720 1220 aa18.29■□□□□ 0.52
RNF4-213ENST00000509388 RHPN1Q8TCX5 695 aa18.29■□□□□ 0.52
RNF4-213ENST00000509388 NEUROD6Q96NK8 337 aa18.29■□□□□ 0.52
RNF4-213ENST00000509388 LRRCC1Q9C099 1032 aa18.29■□□□□ 0.52
RNF4-213ENST00000509388 VPS33BQ9H267 617 aa18.29■□□□□ 0.52
RNF4-213ENST00000509388 ZNF277Q9NRM2 450 aaPredicted RBP18.29■□□□□ 0.52
RNF4-213ENST00000509388 LTBP3Q9NS15 1303 aa18.28■□□□□ 0.52
RNF4-213ENST00000509388 IGHDP01880 384 aa18.28■□□□□ 0.52
RNF4-213ENST00000509388 IARSP41252 1262 aaKnown RBP18.28■□□□□ 0.52
RNF4-213ENST00000509388 CLASRPQ8N2M8 674 aaKnown RBP18.28■□□□□ 0.52
RNF4-213ENST00000509388 LARGE2Q8N3Y3 721 aa18.28■□□□□ 0.52
RNF4-213ENST00000509388 VGLL2Q8N8G2 317 aa18.28■□□□□ 0.52
RNF4-213ENST00000509388 LPIN2Q92539 896 aa18.28■□□□□ 0.52
RNF4-213ENST00000509388 CCDC136Q96JN2 1154 aa18.28■□□□□ 0.52
RNF4-213ENST00000509388 BRCA1P38398 1863 aaKnown RBP18.28■□□□□ 0.52
RNF4-213ENST00000509388 SRCAPQ6ZRS2 3230 aa18.28■□□□□ 0.52
RNF4-213ENST00000509388 CACNA1SQ13698 1873 aa18.27■□□□□ 0.52
RNF4-213ENST00000509388 SNAP23O00161 211 aa18.27■□□□□ 0.52
RNF4-213ENST00000509388 LMNB1P20700 586 aa18.27■□□□□ 0.52
RNF4-213ENST00000509388 CAVIN4Q5BKX8 364 aa18.27■□□□□ 0.52
RNF4-213ENST00000509388 VPS37DQ86XT2 251 aa18.27■□□□□ 0.52
RNF4-213ENST00000509388 JDP2Q8WYK2 163 aa18.27■□□□□ 0.52
RNF4-213ENST00000509388 GPR101Q96P66 508 aaPredicted RBP18.27■□□□□ 0.52
RNF4-213ENST00000509388 TIMM10P62072 90 aa18.26■□□□□ 0.51
RNF4-213ENST00000509388 AOC3Q16853 763 aa18.26■□□□□ 0.51
RNF4-213ENST00000509388 GORABQ5T7V8 394 aa18.26■□□□□ 0.51
RNF4-213ENST00000509388 IL1RAPL2Q9NP60 686 aa18.26■□□□□ 0.51
RNF4-213ENST00000509388 GPR108Q9NPR9 543 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms