RNA–Protein interactions for RNA: ENST00000508546.5

NEDD9-211, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5

Gene NEDD9, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-211ENST00000508546 TRMT112Q9UI30 125 aaKnown RBP12.36□□□□□ -0.43
NEDD9-211ENST00000508546 TSPYL4Q9UJ04 414 aa12.36□□□□□ -0.43
NEDD9-211ENST00000508546 TBC1D8O95759 1140 aa12.35□□□□□ -0.43
NEDD9-211ENST00000508546 ANXA1P04083 346 aa12.35□□□□□ -0.43
NEDD9-211ENST00000508546 TBC1D10BQ4KMP7 808 aaPredicted RBP12.35□□□□□ -0.43
NEDD9-211ENST00000508546 COPS6Q7L5N1 327 aa12.35□□□□□ -0.43
NEDD9-211ENST00000508546 DCPSQ96C86 337 aaKnown RBP12.35□□□□□ -0.43
NEDD9-211ENST00000508546 EGFRP00533 1210 aa12.34□□□□□ -0.43
NEDD9-211ENST00000508546 REM2Q8IYK8 340 aaPredicted RBP12.34□□□□□ -0.43
NEDD9-211ENST00000508546 DBNDD1Q9H9R9 158 aa12.34□□□□□ -0.43
NEDD9-211ENST00000508546 MAPK8IP3Q9UPT6 1336 aa12.34□□□□□ -0.43
NEDD9-211ENST00000508546 SF3B3Q15393 1217 aaKnown RBP12.33□□□□□ -0.44
NEDD9-211ENST00000508546 XAGE3Q8WTP9 111 aa12.33□□□□□ -0.44
NEDD9-211ENST00000508546 NSFL1CQ9UNZ2 370 aaKnown RBP12.33□□□□□ -0.44
NEDD9-211ENST00000508546 RTL9Q8NET4 1388 aa12.32□□□□□ -0.44
NEDD9-211ENST00000508546 ZNF609O15014 1411 aa12.32□□□□□ -0.44
NEDD9-211ENST00000508546 GPR25O00155 361 aa12.32□□□□□ -0.44
NEDD9-211ENST00000508546 ECE2O60344 883 aa12.32□□□□□ -0.44
NEDD9-211ENST00000508546 AIMP1Q12904 312 aaKnown RBP12.32□□□□□ -0.44
NEDD9-211ENST00000508546 SULF1Q8IWU6 871 aa12.32□□□□□ -0.44
NEDD9-211ENST00000508546 EYA3Q99504 573 aa12.32□□□□□ -0.44
NEDD9-211ENST00000508546 POLLQ9UGP5 575 aa12.32□□□□□ -0.44
NEDD9-211ENST00000508546 COL4A1P02462 1669 aa12.32□□□□□ -0.44
NEDD9-211ENST00000508546 C6orf229H3BNL8 230 aa12.31□□□□□ -0.44
NEDD9-211ENST00000508546 RIMBP2O15034 1052 aa12.31□□□□□ -0.44
NEDD9-211ENST00000508546 VIL1P09327 827 aaKnown RBP12.31□□□□□ -0.44
NEDD9-211ENST00000508546 KIF4BQ2VIQ3 1234 aa12.31□□□□□ -0.44
NEDD9-211ENST00000508546 RBM26Q5T8P6 1007 aaKnown RBP12.31□□□□□ -0.44
NEDD9-211ENST00000508546 CELF1Q92879 486 aaKnown RBP12.31□□□□□ -0.44
NEDD9-211ENST00000508546 KCNQ5Q9NR82 932 aa12.31□□□□□ -0.44
NEDD9-211ENST00000508546 GGA3Q9NZ52 723 aa12.31□□□□□ -0.44
NEDD9-211ENST00000508546 GPSM2P81274 684 aa12.3□□□□□ -0.44
NEDD9-211ENST00000508546 NOM1Q5C9Z4 860 aaKnown RBP12.3□□□□□ -0.44
NEDD9-211ENST00000508546 PLBD2Q8NHP8 589 aa12.3□□□□□ -0.44
NEDD9-211ENST00000508546 OTUD5Q96G74 571 aa12.3□□□□□ -0.44
NEDD9-211ENST00000508546 ISCA1Q9BUE6 129 aa12.3□□□□□ -0.44
NEDD9-211ENST00000508546 EN2P19622 333 aaPredicted RBP12.29□□□□□ -0.44
NEDD9-211ENST00000508546 RIPK4P57078 832 aa12.29□□□□□ -0.44
NEDD9-211ENST00000508546 ZNF280AP59817 542 aaPredicted RBP12.29□□□□□ -0.44
NEDD9-211ENST00000508546 FKBP1BP68106 108 aa12.29□□□□□ -0.44
NEDD9-211ENST00000508546 DOK7Q18PE1 504 aa12.29□□□□□ -0.44
NEDD9-211ENST00000508546 TBC1D16Q8TBP0 767 aa12.29□□□□□ -0.44
NEDD9-211ENST00000508546 NECTIN2Q92692 538 aa12.29□□□□□ -0.44
NEDD9-211ENST00000508546 CDCA5Q96FF9 252 aa12.29□□□□□ -0.44
NEDD9-211ENST00000508546 FAM89AQ96GI7 184 aa12.29□□□□□ -0.44
NEDD9-211ENST00000508546 R3HDMLQ9H3Y0 253 aa12.29□□□□□ -0.44
NEDD9-211ENST00000508546 PODXL2Q9NZ53 605 aa12.29□□□□□ -0.44
NEDD9-211ENST00000508546 LAMA3Q16787 3333 aa12.28□□□□□ -0.44
NEDD9-211ENST00000508546 H0YGN5 161 aa12.28□□□□□ -0.44
NEDD9-211ENST00000508546 FKTNO75072 461 aa12.28□□□□□ -0.44
NEDD9-211ENST00000508546 RPS8P62241 208 aaKnown RBP12.28□□□□□ -0.44
NEDD9-211ENST00000508546 LMOD3Q0VAK6 560 aa12.28□□□□□ -0.44
NEDD9-211ENST00000508546 ANKRD13DQ6ZTN6 518 aa12.28□□□□□ -0.44
NEDD9-211ENST00000508546 AGBL3Q8NEM8 1001 aa12.28□□□□□ -0.44
NEDD9-211ENST00000508546 ZC3H12CQ9C0D7 883 aaKnown RBP12.28□□□□□ -0.44
NEDD9-211ENST00000508546 ASTN2O75129 1339 aaPredicted RBP12.28□□□□□ -0.44
NEDD9-211ENST00000508546 PITPNM2Q9BZ72 1349 aa12.28□□□□□ -0.44
NEDD9-211ENST00000508546 TMPOP42166 694 aaKnown RBP12.27□□□□□ -0.45
NEDD9-211ENST00000508546 TRIM28Q13263 835 aaKnown RBP12.27□□□□□ -0.45
NEDD9-211ENST00000508546 INTS3Q68E01 1043 aaKnown RBP12.27□□□□□ -0.45
NEDD9-211ENST00000508546 CHRDL2Q6WN34 429 aa12.27□□□□□ -0.45
NEDD9-211ENST00000508546 CHPF2Q9P2E5 772 aa12.27□□□□□ -0.45
NEDD9-211ENST00000508546 ZNF646O15015 1829 aaPredicted RBP12.26□□□□□ -0.45
NEDD9-211ENST00000508546 CHL1O00533 1208 aa12.26□□□□□ -0.45
NEDD9-211ENST00000508546 IRS4O14654 1257 aaPredicted RBP12.26□□□□□ -0.45
NEDD9-211ENST00000508546 HOXB7P09629 217 aa12.26□□□□□ -0.45
NEDD9-211ENST00000508546 MNX1P50219 401 aaPredicted RBP12.26□□□□□ -0.45
NEDD9-211ENST00000508546 SCARF1Q14162 830 aa12.26□□□□□ -0.45
NEDD9-211ENST00000508546 ANGEL2Q5VTE6 544 aaKnown RBP12.26□□□□□ -0.45
NEDD9-211ENST00000508546 RSBN1LQ6PCB5 846 aaPredicted RBP12.26□□□□□ -0.45
NEDD9-211ENST00000508546 MOB2Q70IA6 237 aa12.26□□□□□ -0.45
NEDD9-211ENST00000508546 GMLQ99445 158 aa12.26□□□□□ -0.45
NEDD9-211ENST00000508546 TRIM17Q9Y577 477 aa12.26□□□□□ -0.45
NEDD9-211ENST00000508546 MYH3P11055 1940 aa12.25□□□□□ -0.45
NEDD9-211ENST00000508546 ATP5J2-PTCD1G3V325 749 aa12.25□□□□□ -0.45
NEDD9-211ENST00000508546 G3V3G9 751 aa12.25□□□□□ -0.45
NEDD9-211ENST00000508546 UFL1O94874 794 aa12.25□□□□□ -0.45
NEDD9-211ENST00000508546 KRT24Q2M2I5 525 aa12.25□□□□□ -0.45
NEDD9-211ENST00000508546 DCAF8Q5TAQ9 597 aa12.25□□□□□ -0.45
NEDD9-211ENST00000508546 OTOP1Q7RTM1 612 aa12.25□□□□□ -0.45
NEDD9-211ENST00000508546 ZNF428Q96B54 188 aa12.25□□□□□ -0.45
NEDD9-211ENST00000508546 RBM27Q9P2N5 1060 aaKnown RBP12.25□□□□□ -0.45
NEDD9-211ENST00000508546 DBF4Q9UBU7 674 aaPredicted RBP12.25□□□□□ -0.45
NEDD9-211ENST00000508546 GGA1Q9UJY5 639 aa12.25□□□□□ -0.45
NEDD9-211ENST00000508546 UNC80Q8N2C7 3258 aa12.25□□□□□ -0.45
NEDD9-211ENST00000508546 LAMB1P07942 1786 aa12.24□□□□□ -0.45
NEDD9-211ENST00000508546 HSP90B1P14625 803 aaKnown RBP12.24□□□□□ -0.45
NEDD9-211ENST00000508546 TM4SF4P48230 202 aa12.24□□□□□ -0.45
NEDD9-211ENST00000508546 HDGFL1Q5TGJ6 251 aa12.24□□□□□ -0.45
NEDD9-211ENST00000508546 ARMC5Q96C12 935 aa12.24□□□□□ -0.45
NEDD9-211ENST00000508546 CFHR5Q9BXR6 569 aa12.24□□□□□ -0.45
NEDD9-211ENST00000508546 MYOZ2Q9NPC6 264 aa12.24□□□□□ -0.45
NEDD9-211ENST00000508546 HYPKQ9NX55 129 aa12.24□□□□□ -0.45
NEDD9-211ENST00000508546 ANKIB1Q9P2G1 1089 aa12.24□□□□□ -0.45
NEDD9-211ENST00000508546 USP17L8P0C7I0 530 aa12.23□□□□□ -0.45
NEDD9-211ENST00000508546 MKRN3Q13064 507 aaKnown RBP12.23□□□□□ -0.45
NEDD9-211ENST00000508546 RTL5Q5HYW3 569 aaPredicted RBP12.23□□□□□ -0.45
NEDD9-211ENST00000508546 ZBTB38Q8NAP3 1195 aaPredicted RBP12.23□□□□□ -0.45
NEDD9-211ENST00000508546 UBE2Q2LH0YL09 131 aa12.22□□□□□ -0.45
NEDD9-211ENST00000508546 PODNQ7Z5L7 613 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms