RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 CARMIL2Q6F5E8 1435 aa7.47□□□□□ -1.21
NUP54-206ENST00000508465 ZBTB42B2RXF5 422 aa7.47□□□□□ -1.21
NUP54-206ENST00000508465 TARSP26639 723 aaKnown RBP7.47□□□□□ -1.21
NUP54-206ENST00000508465 FAM69CQ0P6D2 419 aa7.47□□□□□ -1.21
NUP54-206ENST00000508465 PRR23CQ6ZRP0 262 aa7.47□□□□□ -1.21
NUP54-206ENST00000508465 ZFATQ9P243 1243 aa7.47□□□□□ -1.21
NUP54-206ENST00000508465 TFIP11Q9UBB9 837 aaKnown RBP7.47□□□□□ -1.21
NUP54-206ENST00000508465 TNIKQ9UKE5 1360 aa7.46□□□□□ -1.21
NUP54-206ENST00000508465 SASH3O75995 380 aa7.46□□□□□ -1.22
NUP54-206ENST00000508465 MLLT1Q03111 559 aaPredicted RBP7.46□□□□□ -1.22
NUP54-206ENST00000508465 DCAF11Q8TEB1 546 aa7.46□□□□□ -1.22
NUP54-206ENST00000508465 VTI1AQ96AJ9 217 aa7.46□□□□□ -1.22
NUP54-206ENST00000508465 IFT43Q96FT9 208 aa7.46□□□□□ -1.22
NUP54-206ENST00000508465 MEGF10Q96KG7 1140 aa7.46□□□□□ -1.22
NUP54-206ENST00000508465 SMG9Q9H0W8 520 aaKnown RBP7.46□□□□□ -1.22
NUP54-206ENST00000508465 AKTIPQ9H8T0 292 aa7.46□□□□□ -1.22
NUP54-206ENST00000508465 PCMTD2Q9NV79 361 aa7.46□□□□□ -1.22
NUP54-206ENST00000508465 KLK14Q9P0G3 267 aa7.46□□□□□ -1.22
NUP54-206ENST00000508465 IQGAP2Q13576 1575 aa7.46□□□□□ -1.22
NUP54-206ENST00000508465 ARID3CA6NKF2 412 aa7.45□□□□□ -1.22
NUP54-206ENST00000508465 BTBD11A6QL63 1104 aa7.45□□□□□ -1.22
NUP54-206ENST00000508465 MICAL2O94851 1124 aa7.45□□□□□ -1.22
NUP54-206ENST00000508465 NRLP54845 237 aa7.45□□□□□ -1.22
NUP54-206ENST00000508465 DGKZQ13574 1117 aa7.45□□□□□ -1.22
NUP54-206ENST00000508465 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.45□□□□□ -1.22
NUP54-206ENST00000508465 DISP1Q96F81 1524 aa7.45□□□□□ -1.22
NUP54-206ENST00000508465 DLL1O00548 723 aa7.44□□□□□ -1.22
NUP54-206ENST00000508465 EIF2AK2P19525 551 aaKnown RBP7.44□□□□□ -1.22
NUP54-206ENST00000508465 DPYDQ12882 1025 aa7.44□□□□□ -1.22
NUP54-206ENST00000508465 C11orf91Q3C1V1 193 aa7.44□□□□□ -1.22
NUP54-206ENST00000508465 HFE2Q6ZVN8 426 aa7.44□□□□□ -1.22
NUP54-206ENST00000508465 TMEM130Q8N3G9 435 aa7.44□□□□□ -1.22
NUP54-206ENST00000508465 MRPL18Q9H0U6 180 aaKnown RBP7.44□□□□□ -1.22
NUP54-206ENST00000508465 GOLGA2P5Q9HBQ8 144 aa7.44□□□□□ -1.22
NUP54-206ENST00000508465 DEAF1O75398 565 aaPredicted RBP7.43□□□□□ -1.22
NUP54-206ENST00000508465 GRNP28799 593 aaKnown RBP7.43□□□□□ -1.22
NUP54-206ENST00000508465 PLAURQ03405 335 aa7.43□□□□□ -1.22
NUP54-206ENST00000508465 MCTP1Q6DN14 999 aa7.43□□□□□ -1.22
NUP54-206ENST00000508465 DZIP1LQ8IYY4 767 aaKnown RBP7.43□□□□□ -1.22
NUP54-206ENST00000508465 RBSNQ9H1K0 784 aa7.43□□□□□ -1.22
NUP54-206ENST00000508465 SRA1Q9HD15 236 aaKnown RBP7.43□□□□□ -1.22
NUP54-206ENST00000508465 TLR7Q9NYK1 1049 aaKnown RBP7.43□□□□□ -1.22
NUP54-206ENST00000508465 MAFBQ9Y5Q3 323 aaPredicted RBP7.43□□□□□ -1.22
NUP54-206ENST00000508465 ADCY10Q96PN6 1610 aa7.42□□□□□ -1.22
NUP54-206ENST00000508465 PAX4O43316 350 aa7.42□□□□□ -1.22
NUP54-206ENST00000508465 PTCD1O75127 700 aaKnown RBP7.42□□□□□ -1.22
NUP54-206ENST00000508465 LGR5O75473 907 aa7.42□□□□□ -1.22
NUP54-206ENST00000508465 PSAPP07602 524 aa7.42□□□□□ -1.22
NUP54-206ENST00000508465 FSTP19883 344 aa7.42□□□□□ -1.22
NUP54-206ENST00000508465 PTK7Q13308 1070 aa7.42□□□□□ -1.22
NUP54-206ENST00000508465 MAP4K3Q8IVH8 894 aa7.42□□□□□ -1.22
NUP54-206ENST00000508465 UGGT2Q9NYU1 1516 aa7.42□□□□□ -1.22
NUP54-206ENST00000508465 LOC102724428A0A0B4J2F2 783 aa7.41□□□□□ -1.22
NUP54-206ENST00000508465 FOXO3O43524 673 aa7.41□□□□□ -1.22
NUP54-206ENST00000508465 GHRHP01286 108 aa7.41□□□□□ -1.22
NUP54-206ENST00000508465 SIK1P57059 783 aa7.41□□□□□ -1.22
NUP54-206ENST00000508465 CRTC2Q53ET0 693 aaPredicted RBP7.41□□□□□ -1.22
NUP54-206ENST00000508465 ANKMY2Q8IV38 441 aa7.41□□□□□ -1.22
NUP54-206ENST00000508465 GLMNQ92990 594 aa7.41□□□□□ -1.22
NUP54-206ENST00000508465 PLD4Q96BZ4 506 aa7.41□□□□□ -1.22
NUP54-206ENST00000508465 RTCBQ9Y3I0 505 aaKnown RBP7.41□□□□□ -1.22
NUP54-206ENST00000508465 EEA1Q15075 1411 aa7.41□□□□□ -1.22
NUP54-206ENST00000508465 UACAQ9BZF9 1416 aa7.41□□□□□ -1.22
NUP54-206ENST00000508465 GSC2O15499 205 aa7.4□□□□□ -1.22
NUP54-206ENST00000508465 ALX3O95076 343 aa7.4□□□□□ -1.22
NUP54-206ENST00000508465 EGFRP00533 1210 aa7.4□□□□□ -1.22
NUP54-206ENST00000508465 SSTR4P31391 388 aa7.4□□□□□ -1.22
NUP54-206ENST00000508465 CACTIN-AS1Q8N1I8 211 aa7.4□□□□□ -1.22
NUP54-206ENST00000508465 IL22RA1Q8N6P7 574 aa7.4□□□□□ -1.22
NUP54-206ENST00000508465 VRTNQ9H8Y1 702 aa7.4□□□□□ -1.22
NUP54-206ENST00000508465 QTRT2Q9H974 415 aaKnown RBP7.4□□□□□ -1.22
NUP54-206ENST00000508465 PLB1Q6P1J6 1458 aa7.39□□□□□ -1.23
NUP54-206ENST00000508465 COL17A1Q9UMD9 1497 aaPredicted RBP7.39□□□□□ -1.23
NUP54-206ENST00000508465 FAM196BA6NMK8 535 aa7.39□□□□□ -1.23
NUP54-206ENST00000508465 F8W735 103 aaPredicted RBP7.39□□□□□ -1.23
NUP54-206ENST00000508465 XYLBO75191 536 aa7.39□□□□□ -1.23
NUP54-206ENST00000508465 TXKP42681 527 aa7.39□□□□□ -1.23
NUP54-206ENST00000508465 GDF6Q6KF10 455 aaPredicted RBP7.39□□□□□ -1.23
NUP54-206ENST00000508465 CMTR1Q8N1G2 835 aaKnown RBP7.39□□□□□ -1.23
NUP54-206ENST00000508465 MYO19Q96H55 970 aa7.39□□□□□ -1.23
NUP54-206ENST00000508465 MUC3BQ9H195 1237 aa7.39□□□□□ -1.23
NUP54-206ENST00000508465 ASXL2Q76L83 1435 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 USP17L15C9J2P7 530 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 USP17L10C9JJH3 530 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 USP17L13C9JLJ4 530 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 USP17L12C9JPN9 530 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 USP17L11C9JVI0 530 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 USP17L21D6R901 530 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 USP17L18D6R9N7 530 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 USP17L22D6RA61 530 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 USP17L17D6RBQ6 530 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 USP17L19D6RCP7 530 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 USP17L20D6RJB6 530 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 J3QW42 95 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 OPLAHO14841 1288 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 USP17L24Q0WX57 530 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 KANK4Q5T7N3 995 aaPredicted RBP7.38□□□□□ -1.23
NUP54-206ENST00000508465 KIAA0556O60303 1618 aa7.38□□□□□ -1.23
NUP54-206ENST00000508465 ABCC2Q92887 1545 aa7.37□□□□□ -1.23
NUP54-206ENST00000508465 GOLGA3Q08378 1498 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms