RNA–Protein interactions for RNA: ENST00000506779.1

TOPBP1-205, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 536 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-205ENST00000506779 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.96□□□□□ -1.46
TOPBP1-205ENST00000506779 KIAA1211Q6ZU35 1233 aa5.96□□□□□ -1.46
TOPBP1-205ENST00000506779 GALNT11Q8NCW6 608 aa5.96□□□□□ -1.46
TOPBP1-205ENST00000506779 TMEM40Q8WWA1 233 aa5.96□□□□□ -1.46
TOPBP1-205ENST00000506779 FAM168AQ92567 244 aa5.96□□□□□ -1.46
TOPBP1-205ENST00000506779 OSBPL1AQ9BXW6 950 aa5.96□□□□□ -1.46
TOPBP1-205ENST00000506779 SKIP12755 728 aa5.95□□□□□ -1.46
TOPBP1-205ENST00000506779 ECM1Q16610 540 aa5.95□□□□□ -1.46
TOPBP1-205ENST00000506779 CPSF6Q16630 551 aaKnown RBP eCLIP5.95□□□□□ -1.46
TOPBP1-205ENST00000506779 LRRC56Q8IYG6 542 aaPredicted RBP5.95□□□□□ -1.46
TOPBP1-205ENST00000506779 FBXL6Q8N531 539 aa5.95□□□□□ -1.46
TOPBP1-205ENST00000506779 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.95□□□□□ -1.46
TOPBP1-205ENST00000506779 ZNF358Q9NW07 568 aa5.95□□□□□ -1.46
TOPBP1-205ENST00000506779 KCNK4Q9NYG8 393 aa5.95□□□□□ -1.46
TOPBP1-205ENST00000506779 PIK3CDO00329 1044 aa5.94□□□□□ -1.46
TOPBP1-205ENST00000506779 CD68P34810 354 aaPredicted RBP5.94□□□□□ -1.46
TOPBP1-205ENST00000506779 RAP1GAPP47736 663 aa5.94□□□□□ -1.46
TOPBP1-205ENST00000506779 HIRAP54198 1017 aaPredicted RBP5.94□□□□□ -1.46
TOPBP1-205ENST00000506779 PLD4Q96BZ4 506 aa5.94□□□□□ -1.46
TOPBP1-205ENST00000506779 NOD1Q9Y239 953 aa5.94□□□□□ -1.46
TOPBP1-205ENST00000506779 TNS4Q8IZW8 715 aa5.93□□□□□ -1.46
TOPBP1-205ENST00000506779 COG6Q9Y2V7 657 aa5.93□□□□□ -1.46
TOPBP1-205ENST00000506779 SART1O43290 800 aaKnown RBP5.92□□□□□ -1.46
TOPBP1-205ENST00000506779 GTF2IP78347 998 aa5.92□□□□□ -1.46
TOPBP1-205ENST00000506779 ZNF792Q3KQV3 632 aa5.92□□□□□ -1.46
TOPBP1-205ENST00000506779 KRT25Q7Z3Z0 450 aa5.92□□□□□ -1.46
TOPBP1-205ENST00000506779 CYP26A1O43174 497 aa5.91□□□□□ -1.46
TOPBP1-205ENST00000506779 RAD21O60216 631 aa5.91□□□□□ -1.46
TOPBP1-205ENST00000506779 TARSP26639 723 aaKnown RBP5.91□□□□□ -1.46
TOPBP1-205ENST00000506779 NRLP54845 237 aa5.91□□□□□ -1.46
TOPBP1-205ENST00000506779 CTSWP56202 376 aa5.91□□□□□ -1.46
TOPBP1-205ENST00000506779 PSMA6P60900 246 aaKnown RBP5.91□□□□□ -1.46
TOPBP1-205ENST00000506779 NCOA4Q13772 614 aa5.91□□□□□ -1.46
TOPBP1-205ENST00000506779 POTEAQ6S8J7 498 aa5.91□□□□□ -1.46
TOPBP1-205ENST00000506779 DBX2Q6ZNG2 339 aa5.91□□□□□ -1.46
TOPBP1-205ENST00000506779 ATG4DQ86TL0 474 aaPredicted RBP5.91□□□□□ -1.46
TOPBP1-205ENST00000506779 MUC3BQ9H195 1237 aa5.91□□□□□ -1.46
TOPBP1-205ENST00000506779 HIF3AQ9Y2N7 669 aa5.91□□□□□ -1.46
TOPBP1-205ENST00000506779 PPME1Q9Y570 386 aa5.91□□□□□ -1.46
TOPBP1-205ENST00000506779 LZTS3O60299 673 aaPredicted RBP5.9□□□□□ -1.46
TOPBP1-205ENST00000506779 PREPP48147 710 aa5.9□□□□□ -1.46
TOPBP1-205ENST00000506779 SHISA5Q8N114 240 aa5.9□□□□□ -1.46
TOPBP1-205ENST00000506779 IFT43Q96FT9 208 aa5.9□□□□□ -1.46
TOPBP1-205ENST00000506779 USP17L5A8MUK1 530 aa5.89□□□□□ -1.47
TOPBP1-205ENST00000506779 PLCL1Q15111 1095 aa5.89□□□□□ -1.47
TOPBP1-205ENST00000506779 DUOXA2Q1HG44 320 aa5.89□□□□□ -1.47
TOPBP1-205ENST00000506779 DEPDC4Q8N2C3 294 aa5.89□□□□□ -1.47
TOPBP1-205ENST00000506779 NFATC2IPQ8NCF5 419 aa5.89□□□□□ -1.47
TOPBP1-205ENST00000506779 LINC01387J3KSC0 135 aa5.88□□□□□ -1.47
TOPBP1-205ENST00000506779 J3QW42 95 aa5.88□□□□□ -1.47
TOPBP1-205ENST00000506779 TM4SF5O14894 197 aa5.88□□□□□ -1.47
TOPBP1-205ENST00000506779 INHBBP09529 407 aa5.88□□□□□ -1.47
TOPBP1-205ENST00000506779 RARAP10276 462 aa5.88□□□□□ -1.47
TOPBP1-205ENST00000506779 MAP4P27816 1152 aaKnown RBP5.88□□□□□ -1.47
TOPBP1-205ENST00000506779 ARID4AP29374 1257 aaPredicted RBP5.88□□□□□ -1.47
TOPBP1-205ENST00000506779 HIF1AQ16665 826 aa5.88□□□□□ -1.47
TOPBP1-205ENST00000506779 TRIM50Q86XT4 487 aa5.88□□□□□ -1.47
TOPBP1-205ENST00000506779 GLIS3Q8NEA6 775 aa5.88□□□□□ -1.47
TOPBP1-205ENST00000506779 METTL22Q9BUU2 404 aaPredicted RBP5.88□□□□□ -1.47
TOPBP1-205ENST00000506779 ALG2Q9H553 416 aa5.88□□□□□ -1.47
TOPBP1-205ENST00000506779 CHMP3Q9Y3E7 222 aa5.88□□□□□ -1.47
TOPBP1-205ENST00000506779 TSPAN15O95858 294 aa5.87□□□□□ -1.47
TOPBP1-205ENST00000506779 UBTFP17480 764 aaKnown RBP5.87□□□□□ -1.47
TOPBP1-205ENST00000506779 IER5Q5VY09 327 aa5.87□□□□□ -1.47
TOPBP1-205ENST00000506779 ANKRD34AQ69YU3 496 aa5.87□□□□□ -1.47
TOPBP1-205ENST00000506779 CACTIN-AS1Q8N1I8 211 aa5.87□□□□□ -1.47
TOPBP1-205ENST00000506779 POM121Q96HA1 1249 aa5.87□□□□□ -1.47
TOPBP1-205ENST00000506779 TRIM33Q9UPN9 1127 aa5.87□□□□□ -1.47
TOPBP1-205ENST00000506779 LOC102724428A0A0B4J2F2 783 aa5.86□□□□□ -1.47
TOPBP1-205ENST00000506779 SASH3O75995 380 aa5.86□□□□□ -1.47
TOPBP1-205ENST00000506779 ATP1A2P50993 1020 aa5.86□□□□□ -1.47
TOPBP1-205ENST00000506779 SIK1P57059 783 aa5.86□□□□□ -1.47
TOPBP1-205ENST00000506779 ANKLE2Q86XL3 938 aa5.86□□□□□ -1.47
TOPBP1-205ENST00000506779 TPCN2Q8NHX9 752 aa5.86□□□□□ -1.47
TOPBP1-205ENST00000506779 LRRC10BA6NIK2 292 aa5.85□□□□□ -1.47
TOPBP1-205ENST00000506779 EPB42P16452 691 aa5.85□□□□□ -1.47
TOPBP1-205ENST00000506779 ALDH16A1Q8IZ83 802 aa5.85□□□□□ -1.47
TOPBP1-205ENST00000506779 UBASH3BQ8TF42 649 aa5.85□□□□□ -1.47
TOPBP1-205ENST00000506779 TSPAN10Q9H1Z9 355 aaPredicted RBP5.85□□□□□ -1.47
TOPBP1-205ENST00000506779 DMGDHQ9UI17 866 aaKnown RBP5.85□□□□□ -1.47
TOPBP1-205ENST00000506779 USP17L3A6NCW0 530 aa5.84□□□□□ -1.47
TOPBP1-205ENST00000506779 USP17L4A6NCW7 530 aa5.84□□□□□ -1.47
TOPBP1-205ENST00000506779 DDX3YO15523 660 aaKnown RBP5.84□□□□□ -1.47
TOPBP1-205ENST00000506779 GHRHP01286 108 aa5.84□□□□□ -1.47
TOPBP1-205ENST00000506779 RTN1Q16799 776 aa5.84□□□□□ -1.47
TOPBP1-205ENST00000506779 SGO2Q562F6 1265 aa5.84□□□□□ -1.47
TOPBP1-205ENST00000506779 TXNDC11Q6PKC3 985 aa5.84□□□□□ -1.47
TOPBP1-205ENST00000506779 USP17L2Q6R6M4 530 aa5.84□□□□□ -1.47
TOPBP1-205ENST00000506779 ZNF574Q6ZN55 896 aaPredicted RBP5.84□□□□□ -1.47
TOPBP1-205ENST00000506779 USP17L1Q7RTZ2 530 aa5.84□□□□□ -1.47
TOPBP1-205ENST00000506779 BCL7CQ8WUZ0 217 aaPredicted RBP5.84□□□□□ -1.47
TOPBP1-205ENST00000506779 FOXD4L4Q8WXT5 416 aaPredicted RBP5.84□□□□□ -1.47
TOPBP1-205ENST00000506779 TLR7Q9NYK1 1049 aaKnown RBP5.84□□□□□ -1.47
TOPBP1-205ENST00000506779 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.84□□□□□ -1.47
TOPBP1-205ENST00000506779 RBM19Q9Y4C8 960 aaKnown RBP5.84□□□□□ -1.47
TOPBP1-205ENST00000506779 MEGF11A6BM72 1044 aa5.83□□□□□ -1.48
TOPBP1-205ENST00000506779 POM121CA8CG34 1229 aa5.83□□□□□ -1.48
TOPBP1-205ENST00000506779 FLIIQ13045 1269 aa5.83□□□□□ -1.48
TOPBP1-205ENST00000506779 CCDC102BQ68D86 513 aa5.83□□□□□ -1.48
TOPBP1-205ENST00000506779 AMIGO3Q86WK7 504 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms