RNA–Protein interactions for RNA: ENST00000505589.1

NEDD9-210, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-210ENST00000505589 ZIC5Q96T25 663 aa12.89□□□□□ -0.35
NEDD9-210ENST00000505589 POLLQ9UGP5 575 aa12.89□□□□□ -0.35
NEDD9-210ENST00000505589 ANKRD36CQ5JPF3 1778 aa12.89□□□□□ -0.35
NEDD9-210ENST00000505589 ANXA1P04083 346 aa12.88□□□□□ -0.35
NEDD9-210ENST00000505589 DOK7Q18PE1 504 aa12.88□□□□□ -0.35
NEDD9-210ENST00000505589 NOM1Q5C9Z4 860 aaKnown RBP12.88□□□□□ -0.35
NEDD9-210ENST00000505589 PODNQ7Z5L7 613 aa12.88□□□□□ -0.35
NEDD9-210ENST00000505589 TBC1D16Q8TBP0 767 aa12.88□□□□□ -0.35
NEDD9-210ENST00000505589 CELF1Q92879 486 aaKnown RBP12.88□□□□□ -0.35
NEDD9-210ENST00000505589 FAM89AQ96GI7 184 aa12.88□□□□□ -0.35
NEDD9-210ENST00000505589 ISCA1Q9BUE6 129 aa12.88□□□□□ -0.35
NEDD9-210ENST00000505589 GGA1Q9UJY5 639 aa12.88□□□□□ -0.35
NEDD9-210ENST00000505589 PITPNM2Q9BZ72 1349 aa12.88□□□□□ -0.35
NEDD9-210ENST00000505589 IRS4O14654 1257 aaPredicted RBP12.87□□□□□ -0.35
NEDD9-210ENST00000505589 TMPOP42166 694 aaKnown RBP12.87□□□□□ -0.35
NEDD9-210ENST00000505589 GPSM2P81274 684 aa12.87□□□□□ -0.35
NEDD9-210ENST00000505589 SCARF1Q14162 830 aa12.87□□□□□ -0.35
NEDD9-210ENST00000505589 PROSER3Q2NL68 480 aa12.87□□□□□ -0.35
NEDD9-210ENST00000505589 CCDC152Q4G0S7 254 aa12.87□□□□□ -0.35
NEDD9-210ENST00000505589 HDGFL1Q5TGJ6 251 aa12.87□□□□□ -0.35
NEDD9-210ENST00000505589 RSBN1LQ6PCB5 846 aaPredicted RBP12.87□□□□□ -0.35
NEDD9-210ENST00000505589 OGFOD1Q8N543 542 aa12.87□□□□□ -0.35
NEDD9-210ENST00000505589 GGA3Q9NZ52 723 aa12.87□□□□□ -0.35
NEDD9-210ENST00000505589 SHTN1A0MZ66 631 aa12.86□□□□□ -0.35
NEDD9-210ENST00000505589 ADM5C9JUS6 153 aa12.86□□□□□ -0.35
NEDD9-210ENST00000505589 CHL1O00533 1208 aa12.86□□□□□ -0.35
NEDD9-210ENST00000505589 USP17L8P0C7I0 530 aa12.86□□□□□ -0.35
NEDD9-210ENST00000505589 SOX10P56693 466 aa12.86□□□□□ -0.35
NEDD9-210ENST00000505589 ZNF280AP59817 542 aaPredicted RBP12.86□□□□□ -0.35
NEDD9-210ENST00000505589 RALBP1Q15311 655 aa12.86□□□□□ -0.35
NEDD9-210ENST00000505589 ZBTB38Q8NAP3 1195 aaPredicted RBP12.86□□□□□ -0.35
NEDD9-210ENST00000505589 CDCA5Q96FF9 252 aa12.86□□□□□ -0.35
NEDD9-210ENST00000505589 AKAP11Q9UKA4 1901 aa12.86□□□□□ -0.35
NEDD9-210ENST00000505589 USP17L3A6NCW0 530 aa12.85□□□□□ -0.35
NEDD9-210ENST00000505589 USP17L4A6NCW7 530 aa12.85□□□□□ -0.35
NEDD9-210ENST00000505589 ALDH1A1P00352 501 aa12.85□□□□□ -0.35
NEDD9-210ENST00000505589 TM4SF4P48230 202 aa12.85□□□□□ -0.35
NEDD9-210ENST00000505589 INHBEP58166 350 aa12.85□□□□□ -0.35
NEDD9-210ENST00000505589 SREBF2Q12772 1141 aa12.85□□□□□ -0.35
NEDD9-210ENST00000505589 ANGEL2Q5VTE6 544 aaKnown RBP12.85□□□□□ -0.35
NEDD9-210ENST00000505589 USP17L1Q7RTZ2 530 aa12.85□□□□□ -0.35
NEDD9-210ENST00000505589 RIC3Q7Z5B4 369 aa12.85□□□□□ -0.35
NEDD9-210ENST00000505589 SLC51AQ86UW1 340 aa12.85□□□□□ -0.35
NEDD9-210ENST00000505589 MYOZ2Q9NPC6 264 aa12.85□□□□□ -0.35
NEDD9-210ENST00000505589 HPS5Q9UPZ3 1129 aa12.85□□□□□ -0.35
NEDD9-210ENST00000505589 DLG5Q8TDM6 1919 aa12.85□□□□□ -0.35
NEDD9-210ENST00000505589 UFL1O94874 794 aa12.84□□□□□ -0.35
NEDD9-210ENST00000505589 ATP2B4P23634 1241 aa12.84□□□□□ -0.35
NEDD9-210ENST00000505589 GOLGA2Q08379 1002 aa12.84□□□□□ -0.35
NEDD9-210ENST00000505589 KCNQ5Q9NR82 932 aa12.84□□□□□ -0.35
NEDD9-210ENST00000505589 CHPF2Q9P2E5 772 aa12.84□□□□□ -0.35
NEDD9-210ENST00000505589 LAS1LQ9Y4W2 734 aaKnown RBP12.84□□□□□ -0.35
NEDD9-210ENST00000505589 ATP5J2-PTCD1G3V325 749 aa12.83□□□□□ -0.36
NEDD9-210ENST00000505589 PDE8AO60658 829 aa12.83□□□□□ -0.36
NEDD9-210ENST00000505589 EGFRP00533 1210 aa12.83□□□□□ -0.36
NEDD9-210ENST00000505589 TTLL12Q14166 644 aaPredicted RBP12.83□□□□□ -0.36
NEDD9-210ENST00000505589 INTS3Q68E01 1043 aaKnown RBP12.83□□□□□ -0.36
NEDD9-210ENST00000505589 FBXO46Q6PJ61 603 aaPredicted RBP12.83□□□□□ -0.36
NEDD9-210ENST00000505589 ARMC9Q7Z3E5 817 aa12.83□□□□□ -0.36
NEDD9-210ENST00000505589 RASAL3Q86YV0 1011 aa12.83□□□□□ -0.36
NEDD9-210ENST00000505589 ANKRD18AQ8IVF6 992 aa12.83□□□□□ -0.36
NEDD9-210ENST00000505589 CCDC191Q8NCU4 936 aa12.83□□□□□ -0.36
NEDD9-210ENST00000505589 POLR2AP24928 1970 aaKnown RBP12.83□□□□□ -0.36
NEDD9-210ENST00000505589 XDHP47989 1333 aa12.83□□□□□ -0.36
NEDD9-210ENST00000505589 MYO3BQ8WXR4 1341 aa12.83□□□□□ -0.36
NEDD9-210ENST00000505589 RTL9Q8NET4 1388 aa12.82□□□□□ -0.36
NEDD9-210ENST00000505589 ZNF609O15014 1411 aa12.82□□□□□ -0.36
NEDD9-210ENST00000505589 DDX58O95786 925 aaKnown RBP12.82□□□□□ -0.36
NEDD9-210ENST00000505589 CALD1Q05682 793 aaKnown RBP12.82□□□□□ -0.36
NEDD9-210ENST00000505589 NEUROD2Q15784 382 aa12.82□□□□□ -0.36
NEDD9-210ENST00000505589 DLK2Q6UY11 383 aa12.82□□□□□ -0.36
NEDD9-210ENST00000505589 ZNF296Q8WUU4 475 aaPredicted RBP12.82□□□□□ -0.36
NEDD9-210ENST00000505589 CDC5LQ99459 802 aaKnown RBP12.82□□□□□ -0.36
NEDD9-210ENST00000505589 GPR25O00155 361 aa12.81□□□□□ -0.36
NEDD9-210ENST00000505589 FKTNO75072 461 aa12.81□□□□□ -0.36
NEDD9-210ENST00000505589 RTL5Q5HYW3 569 aaPredicted RBP12.81□□□□□ -0.36
NEDD9-210ENST00000505589 RUNDC1Q96C34 613 aa12.81□□□□□ -0.36
NEDD9-210ENST00000505589 CFHR5Q9BXR6 569 aa12.81□□□□□ -0.36
NEDD9-210ENST00000505589 PDE4DIPQ5VU43 2346 aa12.8□□□□□ -0.36
NEDD9-210ENST00000505589 UNCXA6NJT0 531 aa12.8□□□□□ -0.36
NEDD9-210ENST00000505589 TBC1D8O95759 1140 aa12.8□□□□□ -0.36
NEDD9-210ENST00000505589 PCCAP05165 728 aaPredicted RBP12.8□□□□□ -0.36
NEDD9-210ENST00000505589 STRIP1Q5VSL9 837 aa12.8□□□□□ -0.36
NEDD9-210ENST00000505589 CWC25Q9NXE8 425 aaPredicted RBP12.8□□□□□ -0.36
NEDD9-210ENST00000505589 WDR43Q15061 677 aaKnown RBP eCLIP12.79□□□□□ -0.36
NEDD9-210ENST00000505589 DUSP27Q5VZP5 1158 aa12.79□□□□□ -0.36
NEDD9-210ENST00000505589 OTUD7BQ6GQQ9 843 aa12.79□□□□□ -0.36
NEDD9-210ENST00000505589 APOBEC3FQ8IUX4 373 aaKnown RBP12.79□□□□□ -0.36
NEDD9-210ENST00000505589 GMLQ99445 158 aa12.79□□□□□ -0.36
NEDD9-210ENST00000505589 LAMB2P55268 1798 aa12.79□□□□□ -0.36
NEDD9-210ENST00000505589 DUOX1Q9NRD9 1551 aa12.78□□□□□ -0.36
NEDD9-210ENST00000505589 UBE2Q2LH0YL09 131 aa12.78□□□□□ -0.36
NEDD9-210ENST00000505589 ARHGEF6Q15052 776 aa12.78□□□□□ -0.36
NEDD9-210ENST00000505589 COA1Q9GZY4 146 aa12.78□□□□□ -0.36
NEDD9-210ENST00000505589 SEC31BQ9NQW1 1179 aa12.78□□□□□ -0.36
NEDD9-210ENST00000505589 BSDC1Q9NW68 430 aaPredicted RBP12.78□□□□□ -0.36
NEDD9-210ENST00000505589 LEMD3Q9Y2U8 911 aa12.78□□□□□ -0.36
NEDD9-210ENST00000505589 LRRC37AA6NMS7 1700 aa12.78□□□□□ -0.36
NEDD9-210ENST00000505589 DDX60Q8IY21 1712 aaKnown RBP12.78□□□□□ -0.36
NEDD9-210ENST00000505589 MANSC4A6NHS7 340 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms