RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 TNS2Q63HR2 1409 aa11.71□□□□□ -0.54
CLIP1-204ENST00000501271 Q6ZUG5 572 aa11.71□□□□□ -0.54
CLIP1-204ENST00000501271 STOX1Q6ZVD7 989 aa11.71□□□□□ -0.54
CLIP1-204ENST00000501271 GTF3C6Q969F1 213 aa11.71□□□□□ -0.54
CLIP1-204ENST00000501271 ZNF594Q96JF6 807 aaPredicted RBP11.71□□□□□ -0.54
CLIP1-204ENST00000501271 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-204ENST00000501271 PAG1Q9NWQ8 432 aa11.7□□□□□ -0.54
CLIP1-204ENST00000501271 MYH15Q9Y2K3 1946 aa11.7□□□□□ -0.54
CLIP1-204ENST00000501271 PDIA4P13667 645 aaKnown RBP11.7□□□□□ -0.54
CLIP1-204ENST00000501271 MCM5P33992 734 aa11.7□□□□□ -0.54
CLIP1-204ENST00000501271 NKX1-1Q15270 411 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-204ENST00000501271 LRRC2Q9BYS8 371 aa11.7□□□□□ -0.54
CLIP1-204ENST00000501271 ELP1O95163 1332 aa11.7□□□□□ -0.54
CLIP1-204ENST00000501271 SPEF2Q9C093 1822 aa11.7□□□□□ -0.54
CLIP1-204ENST00000501271 PTMAP06454 111 aaKnown RBP11.69□□□□□ -0.54
CLIP1-204ENST00000501271 IL15P40933 162 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-204ENST00000501271 CCDC191Q8NCU4 936 aa11.69□□□□□ -0.54
CLIP1-204ENST00000501271 GPR108Q9NPR9 543 aa11.69□□□□□ -0.54
CLIP1-204ENST00000501271 EYA2O00167 538 aa11.69□□□□□ -0.54
CLIP1-204ENST00000501271 IL2RBP14784 551 aa11.69□□□□□ -0.54
CLIP1-204ENST00000501271 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLIP1-204ENST00000501271 A0A0G2JLW4 131 aa11.68□□□□□ -0.54
CLIP1-204ENST00000501271 HSP90B1P14625 803 aaKnown RBP11.68□□□□□ -0.54
CLIP1-204ENST00000501271 LIG1P18858 919 aa11.68□□□□□ -0.54
CLIP1-204ENST00000501271 BRF1Q92994 677 aa11.68□□□□□ -0.54
CLIP1-204ENST00000501271 PUS3Q9BZE2 481 aaKnown RBP11.68□□□□□ -0.54
CLIP1-204ENST00000501271 A0A1B0GUL7 405 aa11.68□□□□□ -0.54
CLIP1-204ENST00000501271 ADCY5O95622 1261 aa11.68□□□□□ -0.54
CLIP1-204ENST00000501271 SCRN1Q12765 414 aa11.68□□□□□ -0.54
CLIP1-204ENST00000501271 MPNDQ8N594 471 aa11.68□□□□□ -0.54
CLIP1-204ENST00000501271 HELLSQ9NRZ9 838 aa11.68□□□□□ -0.54
CLIP1-204ENST00000501271 TFIP11Q9UBB9 837 aaKnown RBP11.68□□□□□ -0.54
CLIP1-204ENST00000501271 SOS2Q07890 1332 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-204ENST00000501271 ZMYM1Q5SVZ6 1142 aa11.67□□□□□ -0.54
CLIP1-204ENST00000501271 CARD10Q9BWT7 1032 aa11.67□□□□□ -0.54
CLIP1-204ENST00000501271 STRN4Q9NRL3 753 aa11.67□□□□□ -0.54
CLIP1-204ENST00000501271 MAST3O60307 1309 aa11.67□□□□□ -0.54
CLIP1-204ENST00000501271 CIAO1O76071 339 aa11.67□□□□□ -0.54
CLIP1-204ENST00000501271 TPM2P07951 284 aa11.67□□□□□ -0.54
CLIP1-204ENST00000501271 IFIT1P09914 478 aaKnown RBP11.67□□□□□ -0.54
CLIP1-204ENST00000501271 KLHL34Q8N239 644 aa11.67□□□□□ -0.54
CLIP1-204ENST00000501271 LEO1Q8WVC0 666 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-204ENST00000501271 DDX11Q96FC9 970 aa11.67□□□□□ -0.54
CLIP1-204ENST00000501271 SPATA32Q96LK8 384 aa11.67□□□□□ -0.54
CLIP1-204ENST00000501271 DSCC1Q9BVC3 393 aa11.67□□□□□ -0.54
CLIP1-204ENST00000501271 SCAND2PQ9GZW5 306 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-204ENST00000501271 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.67□□□□□ -0.54
CLIP1-204ENST00000501271 NWD2Q9ULI1 1742 aa11.67□□□□□ -0.54
CLIP1-204ENST00000501271 AP5Z1O43299 807 aa11.66□□□□□ -0.54
CLIP1-204ENST00000501271 KDM4AO75164 1064 aa11.66□□□□□ -0.54
CLIP1-204ENST00000501271 HSPD1P10809 573 aaKnown RBP11.66□□□□□ -0.54
CLIP1-204ENST00000501271 RESTQ13127 1097 aa11.66□□□□□ -0.54
CLIP1-204ENST00000501271 PPP4R3CPQ6ZMV5 832 aa11.66□□□□□ -0.54
CLIP1-204ENST00000501271 ISCA1Q9BUE6 129 aa11.66□□□□□ -0.54
CLIP1-204ENST00000501271 CAMK4Q16566 473 aa11.66□□□□□ -0.54
CLIP1-204ENST00000501271 DHX32Q7L7V1 743 aaKnown RBP11.66□□□□□ -0.54
CLIP1-204ENST00000501271 NUP62CLQ9H1M0 184 aa11.66□□□□□ -0.54
CLIP1-204ENST00000501271 ATG3Q9NT62 314 aa11.66□□□□□ -0.54
CLIP1-204ENST00000501271 ZNF330Q9Y3S2 320 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-204ENST00000501271 R3HCC1Q9Y3T6 440 aaKnown RBP11.66□□□□□ -0.54
CLIP1-204ENST00000501271 MYH7P12883 1935 aa11.66□□□□□ -0.54
CLIP1-204ENST00000501271 ITGB4P16144 1822 aa11.65□□□□□ -0.54
CLIP1-204ENST00000501271 M0R2C6 588 aa11.65□□□□□ -0.54
CLIP1-204ENST00000501271 PFKFB2O60825 505 aa11.65□□□□□ -0.54
CLIP1-204ENST00000501271 CCDC192P0DO97 292 aa11.65□□□□□ -0.54
CLIP1-204ENST00000501271 FGD1P98174 961 aa11.65□□□□□ -0.54
CLIP1-204ENST00000501271 SMARCC2Q8TAQ2 1214 aa11.65□□□□□ -0.54
CLIP1-204ENST00000501271 ZNF830Q96NB3 372 aaPredicted RBP11.65□□□□□ -0.54
CLIP1-204ENST00000501271 DACT1Q9NYF0 836 aa11.65□□□□□ -0.54
CLIP1-204ENST00000501271 E7EWF7 191 aa11.65□□□□□ -0.55
CLIP1-204ENST00000501271 RNF113AO15541 343 aaKnown RBP11.65□□□□□ -0.55
CLIP1-204ENST00000501271 CTDNEP1O95476 244 aa11.65□□□□□ -0.55
CLIP1-204ENST00000501271 HMGB1P09429 215 aaKnown RBP11.65□□□□□ -0.55
CLIP1-204ENST00000501271 ADORA1P30542 326 aa11.65□□□□□ -0.55
CLIP1-204ENST00000501271 EXOSC10Q01780 885 aaKnown RBP11.65□□□□□ -0.55
CLIP1-204ENST00000501271 APOBRQ0VD83 1088 aa11.65□□□□□ -0.55
CLIP1-204ENST00000501271 TCIRG1Q13488 830 aa11.65□□□□□ -0.55
CLIP1-204ENST00000501271 MAP3K11Q16584 847 aa11.65□□□□□ -0.55
CLIP1-204ENST00000501271 NSUN7Q8NE18 718 aaKnown RBP11.65□□□□□ -0.55
CLIP1-204ENST00000501271 PGBD1Q96JS3 809 aa11.65□□□□□ -0.55
CLIP1-204ENST00000501271 CCDC85AQ96PX6 553 aaPredicted RBP11.65□□□□□ -0.55
CLIP1-204ENST00000501271 STRCQ7RTU9 1775 aa11.64□□□□□ -0.55
CLIP1-204ENST00000501271 AGXT2Q9BYV1 514 aa11.64□□□□□ -0.55
CLIP1-204ENST00000501271 TMOD3Q9NYL9 352 aa11.64□□□□□ -0.55
CLIP1-204ENST00000501271 SLAIN2Q9P270 581 aa11.64□□□□□ -0.55
CLIP1-204ENST00000501271 H3BQV1 296 aa11.64□□□□□ -0.55
CLIP1-204ENST00000501271 PLCB2Q00722 1185 aa11.64□□□□□ -0.55
CLIP1-204ENST00000501271 KIAA2012Q0VF49 1180 aa11.64□□□□□ -0.55
CLIP1-204ENST00000501271 CCDC57Q2TAC2 916 aa11.64□□□□□ -0.55
CLIP1-204ENST00000501271 IFFO2Q5TF58 517 aa11.64□□□□□ -0.55
CLIP1-204ENST00000501271 TTLL5Q6EMB2 1281 aa11.64□□□□□ -0.55
CLIP1-204ENST00000501271 TICAM2Q86XR7 235 aa11.64□□□□□ -0.55
CLIP1-204ENST00000501271 CKAP2LQ8IYA6 745 aa11.64□□□□□ -0.55
CLIP1-204ENST00000501271 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.64□□□□□ -0.55
CLIP1-204ENST00000501271 OSBP2Q969R2 916 aa11.64□□□□□ -0.55
CLIP1-204ENST00000501271 LLPHQ9BRT6 129 aaKnown RBP11.64□□□□□ -0.55
CLIP1-204ENST00000501271 CEP126Q9P2H0 1117 aa11.64□□□□□ -0.55
CLIP1-204ENST00000501271 MRVI1Q9Y6F6 885 aa11.64□□□□□ -0.55
CLIP1-204ENST00000501271 GOLGA6L4A6NEF3 574 aa11.63□□□□□ -0.55
CLIP1-204ENST00000501271 FOSBP53539 338 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms