RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 GIGYF2Q6Y7W6 1299 aaKnown RBP7.6□□□□□ -1.19
SSBP1-213ENST00000496622 COL22A1Q8NFW1 1626 aaPredicted RBP7.6□□□□□ -1.19
SSBP1-213ENST00000496622 PI4KAP2A4QPH2 592 aa7.59□□□□□ -1.19
SSBP1-213ENST00000496622 SMARCA5O60264 1052 aaPredicted RBP7.59□□□□□ -1.19
SSBP1-213ENST00000496622 PHKG2P15735 406 aa7.59□□□□□ -1.19
SSBP1-213ENST00000496622 TATP17735 454 aaPredicted RBP7.59□□□□□ -1.19
SSBP1-213ENST00000496622 HDAC1Q13547 482 aaPredicted RBP7.59□□□□□ -1.19
SSBP1-213ENST00000496622 AXDND1Q5T1B0 1012 aaPredicted RBP7.59□□□□□ -1.19
SSBP1-213ENST00000496622 PI4KAP1Q8N8J0 262 aa7.59□□□□□ -1.19
SSBP1-213ENST00000496622 OTUD7AQ8TE49 926 aaPredicted RBP7.59□□□□□ -1.19
SSBP1-213ENST00000496622 BTG4Q9NY30 223 aa7.59□□□□□ -1.19
SSBP1-213ENST00000496622 UTRNP46939 3433 aa7.59□□□□□ -1.19
SSBP1-213ENST00000496622 SLIT3O75094 1523 aa7.59□□□□□ -1.19
SSBP1-213ENST00000496622 MYL6BP14649 208 aa7.59□□□□□ -1.19
SSBP1-213ENST00000496622 BAG6P46379 1132 aa7.59□□□□□ -1.19
SSBP1-213ENST00000496622 PDE4DQ08499 809 aa7.59□□□□□ -1.19
SSBP1-213ENST00000496622 INTS3Q68E01 1043 aaKnown RBP7.59□□□□□ -1.19
SSBP1-213ENST00000496622 SLF2Q8IX21 1173 aa7.59□□□□□ -1.19
SSBP1-213ENST00000496622 FAM177A1Q8N128 213 aaPredicted RBP7.59□□□□□ -1.19
SSBP1-213ENST00000496622 ZNF496Q96IT1 587 aaPredicted RBP7.59□□□□□ -1.19
SSBP1-213ENST00000496622 AK7Q96M32 723 aa7.59□□□□□ -1.19
SSBP1-213ENST00000496622 SH3BP1Q9Y3L3 701 aa7.59□□□□□ -1.19
SSBP1-213ENST00000496622 PTCD1O75127 700 aaKnown RBP7.58□□□□□ -1.2
SSBP1-213ENST00000496622 KDM4AO75164 1064 aa7.58□□□□□ -1.2
SSBP1-213ENST00000496622 SMC5Q8IY18 1101 aa7.58□□□□□ -1.2
SSBP1-213ENST00000496622 NKX2-3Q8TAU0 364 aa7.58□□□□□ -1.2
SSBP1-213ENST00000496622 GPCPD1Q9NPB8 672 aa7.58□□□□□ -1.2
SSBP1-213ENST00000496622 USP16Q9Y5T5 823 aa7.58□□□□□ -1.2
SSBP1-213ENST00000496622 TRPM3Q9HCF6 1732 aaPredicted RBP7.58□□□□□ -1.2
SSBP1-213ENST00000496622 MAFGO15525 162 aa7.58□□□□□ -1.2
SSBP1-213ENST00000496622 ZNF790Q6PG37 636 aa7.58□□□□□ -1.2
SSBP1-213ENST00000496622 JARID2Q92833 1246 aaPredicted RBP7.58□□□□□ -1.2
SSBP1-213ENST00000496622 DDRGK1Q96HY6 314 aa7.58□□□□□ -1.2
SSBP1-213ENST00000496622 NBPF7P0C2Y1 421 aaPredicted RBP7.57□□□□□ -1.2
SSBP1-213ENST00000496622 ANP32AP39687 249 aaKnown RBP7.57□□□□□ -1.2
SSBP1-213ENST00000496622 GUCA2AQ02747 115 aa7.57□□□□□ -1.2
SSBP1-213ENST00000496622 TSHZ3Q63HK5 1081 aa7.57□□□□□ -1.2
SSBP1-213ENST00000496622 PNMA6EA0A0J9YXQ4 647 aa7.57□□□□□ -1.2
SSBP1-213ENST00000496622 TLL1O43897 1013 aa7.57□□□□□ -1.2
SSBP1-213ENST00000496622 CWF19L2Q2TBE0 894 aaKnown RBP7.57□□□□□ -1.2
SSBP1-213ENST00000496622 CEP85Q6P2H3 762 aa7.57□□□□□ -1.2
SSBP1-213ENST00000496622 BLOC1S3Q6QNY0 202 aa7.57□□□□□ -1.2
SSBP1-213ENST00000496622 DEFB132Q7Z7B7 95 aa7.57□□□□□ -1.2
SSBP1-213ENST00000496622 CHD1LQ86WJ1 897 aa7.57□□□□□ -1.2
SSBP1-213ENST00000496622 IFNL2Q8IZJ0 200 aa7.57□□□□□ -1.2
SSBP1-213ENST00000496622 MTRQ99707 1265 aa7.57□□□□□ -1.2
SSBP1-213ENST00000496622 SLC52A2Q9HAB3 445 aa7.57□□□□□ -1.2
SSBP1-213ENST00000496622 FAM217BQ9NTX9 383 aaPredicted RBP7.57□□□□□ -1.2
SSBP1-213ENST00000496622 EXOC6BQ9Y2D4 811 aa7.57□□□□□ -1.2
SSBP1-213ENST00000496622 RGPD5Q99666 1765 aa7.56□□□□□ -1.2
SSBP1-213ENST00000496622 A0A0G2JS52 829 aa7.56□□□□□ -1.2
SSBP1-213ENST00000496622 NUCB1Q02818 461 aa7.56□□□□□ -1.2
SSBP1-213ENST00000496622 AMHR2Q16671 573 aa7.56□□□□□ -1.2
SSBP1-213ENST00000496622 USP44Q9H0E7 712 aa7.56□□□□□ -1.2
SSBP1-213ENST00000496622 SPG7Q9UQ90 795 aa7.56□□□□□ -1.2
SSBP1-213ENST00000496622 PTPRCP08575 1304 aa7.56□□□□□ -1.2
SSBP1-213ENST00000496622 WDR17Q8IZU2 1322 aa7.56□□□□□ -1.2
SSBP1-213ENST00000496622 KDM6AO15550 1401 aaPredicted RBP7.56□□□□□ -1.2
SSBP1-213ENST00000496622 TMUB1Q9BVT8 246 aa7.56□□□□□ -1.2
SSBP1-213ENST00000496622 SPON1Q9HCB6 807 aa7.56□□□□□ -1.2
SSBP1-213ENST00000496622 TRPC5Q9UL62 973 aaPredicted RBP7.56□□□□□ -1.2
SSBP1-213ENST00000496622 LRRFIP2Q9Y608 721 aaKnown RBP7.56□□□□□ -1.2
SSBP1-213ENST00000496622 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.56□□□□□ -1.2
SSBP1-213ENST00000496622 SSTR3P32745 418 aaPredicted RBP7.55□□□□□ -1.2
SSBP1-213ENST00000496622 CABP4P57796 275 aa7.55□□□□□ -1.2
SSBP1-213ENST00000496622 EGFL6Q8IUX8 553 aa7.55□□□□□ -1.2
SSBP1-213ENST00000496622 ZCRB1Q8TBF4 217 aaKnown RBP7.55□□□□□ -1.2
SSBP1-213ENST00000496622 ANP32BQ92688 251 aaKnown RBP7.55□□□□□ -1.2
SSBP1-213ENST00000496622 IPO9Q96P70 1041 aaKnown RBP7.55□□□□□ -1.2
SSBP1-213ENST00000496622 ALS2Q96Q42 1657 aa7.55□□□□□ -1.2
SSBP1-213ENST00000496622 SMAP1Q8IYB5 467 aaPredicted RBP7.55□□□□□ -1.2
SSBP1-213ENST00000496622 SYTL4Q96C24 671 aaPredicted RBP7.55□□□□□ -1.2
SSBP1-213ENST00000496622 CARD10Q9BWT7 1032 aa7.55□□□□□ -1.2
SSBP1-213ENST00000496622 RRAGDQ9NQL2 400 aaPredicted RBP7.55□□□□□ -1.2
SSBP1-213ENST00000496622 PLA2G2EQ9NZK7 142 aa7.55□□□□□ -1.2
SSBP1-213ENST00000496622 MAP3K2Q9Y2U5 619 aa7.55□□□□□ -1.2
SSBP1-213ENST00000496622 ZNF330Q9Y3S2 320 aaPredicted RBP7.55□□□□□ -1.2
SSBP1-213ENST00000496622 DLL1O00548 723 aa7.54□□□□□ -1.2
SSBP1-213ENST00000496622 CLCN1P35523 988 aa7.54□□□□□ -1.2
SSBP1-213ENST00000496622 TJAP1Q5JTD0 557 aa7.54□□□□□ -1.2
SSBP1-213ENST00000496622 DCAF5Q96JK2 942 aa7.54□□□□□ -1.2
SSBP1-213ENST00000496622 ATRNO75882 1429 aa7.54□□□□□ -1.2
SSBP1-213ENST00000496622 CPDO75976 1380 aa7.54□□□□□ -1.2
SSBP1-213ENST00000496622 WDR90Q96KV7 1748 aa7.54□□□□□ -1.2
SSBP1-213ENST00000496622 IL2RBP14784 551 aa7.54□□□□□ -1.2
SSBP1-213ENST00000496622 CD46P15529 392 aa7.54□□□□□ -1.2
SSBP1-213ENST00000496622 MFAP1P55081 439 aaKnown RBP7.54□□□□□ -1.2
SSBP1-213ENST00000496622 SEMA3FQ13275 785 aa7.54□□□□□ -1.2
SSBP1-213ENST00000496622 R3HDM1Q15032 1099 aaKnown RBP7.54□□□□□ -1.2
SSBP1-213ENST00000496622 ANKRD44Q8N8A2 993 aa7.54□□□□□ -1.2
SSBP1-213ENST00000496622 KLRG1Q96E93 195 aa7.54□□□□□ -1.2
SSBP1-213ENST00000496622 DBF4Q9UBU7 674 aaPredicted RBP7.54□□□□□ -1.2
SSBP1-213ENST00000496622 PCDHB3Q9Y5E6 796 aa7.54□□□□□ -1.2
SSBP1-213ENST00000496622 DISP2A7MBM2 1401 aa7.54□□□□□ -1.2
SSBP1-213ENST00000496622 ATP10DQ9P241 1426 aa7.54□□□□□ -1.2
SSBP1-213ENST00000496622 DNTTIP2Q5QJE6 756 aaKnown RBP7.53□□□□□ -1.2
SSBP1-213ENST00000496622 COPS6Q7L5N1 327 aa7.53□□□□□ -1.2
SSBP1-213ENST00000496622 TTC5Q8N0Z6 440 aa7.53□□□□□ -1.2
SSBP1-213ENST00000496622 DNAAF4Q8WXU2 420 aa7.53□□□□□ -1.2
SSBP1-213ENST00000496622 BEGAINQ9BUH8 593 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms