RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 RFX5P48382 616 aaPredicted RBP21.28■■□□□ 1
HDAC6-235ENST00000495515 GPSM2P81274 684 aa21.28■■□□□ 1
HDAC6-235ENST00000495515 AAMPQ13685 434 aa21.28■■□□□ 1
HDAC6-235ENST00000495515 RPAP2Q8IXW5 612 aaPredicted RBP21.28■■□□□ 1
HDAC6-235ENST00000495515 CRBNQ96SW2 442 aa21.28■■□□□ 1
HDAC6-235ENST00000495515 PODXL2Q9NZ53 605 aa21.28■■□□□ 1
HDAC6-235ENST00000495515 CACNA1SQ13698 1873 aa21.28■■□□□ 1
HDAC6-235ENST00000495515 LMNB1P20700 586 aa21.27■■□□□ 1
HDAC6-235ENST00000495515 RASSF7Q02833 373 aa21.27■■□□□ 1
HDAC6-235ENST00000495515 PTPN12Q05209 780 aaKnown RBP21.27■■□□□ 1
HDAC6-235ENST00000495515 CEP85Q6P2H3 762 aa21.27■■□□□ 1
HDAC6-235ENST00000495515 RTFDC1Q9BY42 306 aaPredicted RBP21.27■■□□□ 1
HDAC6-235ENST00000495515 VPS33BQ9H267 617 aa21.27■■□□□ 1
HDAC6-235ENST00000495515 COPRSQ9NQ92 184 aa21.27■■□□□ 1
HDAC6-235ENST00000495515 GGA1Q9UJY5 639 aa21.27■■□□□ 1
HDAC6-235ENST00000495515 MROH5Q6ZUA9 1318 aa21.27■□□□□ 0.99
HDAC6-235ENST00000495515 C6orf229H3BNL8 230 aa21.26■□□□□ 0.99
HDAC6-235ENST00000495515 EYA2O00167 538 aa21.26■□□□□ 0.99
HDAC6-235ENST00000495515 HMMRO75330 724 aa21.26■□□□□ 0.99
HDAC6-235ENST00000495515 ATP2B4P23634 1241 aa21.26■□□□□ 0.99
HDAC6-235ENST00000495515 CHRNDQ07001 517 aa21.26■□□□□ 0.99
HDAC6-235ENST00000495515 KLHDC4Q8TBB5 520 aa21.26■□□□□ 0.99
HDAC6-235ENST00000495515 EYA3Q99504 573 aa21.26■□□□□ 0.99
HDAC6-235ENST00000495515 SNED1Q8TER0 1413 aa21.26■□□□□ 0.99
HDAC6-235ENST00000495515 COL4A1P02462 1669 aa21.25■□□□□ 0.99
HDAC6-235ENST00000495515 PNMA6EA0A0J9YXQ4 647 aa21.25■□□□□ 0.99
HDAC6-235ENST00000495515 CIAO1O76071 339 aa21.25■□□□□ 0.99
HDAC6-235ENST00000495515 SSH3Q8TE77 659 aa21.25■□□□□ 0.99
HDAC6-235ENST00000495515 LEMD3Q9Y2U8 911 aa21.25■□□□□ 0.99
HDAC6-235ENST00000495515 TAF1P21675 1872 aa21.24■□□□□ 0.99
HDAC6-235ENST00000495515 UFL1O94874 794 aa21.24■□□□□ 0.99
HDAC6-235ENST00000495515 KCNJ4P48050 445 aa21.24■□□□□ 0.99
HDAC6-235ENST00000495515 POLA2Q14181 598 aa21.24■□□□□ 0.99
HDAC6-235ENST00000495515 METTL24Q5JXM2 366 aa21.24■□□□□ 0.99
HDAC6-235ENST00000495515 SLC51AQ86UW1 340 aa21.24■□□□□ 0.99
HDAC6-235ENST00000495515 TBC1D16Q8TBP0 767 aa21.24■□□□□ 0.99
HDAC6-235ENST00000495515 PUS3Q9BZE2 481 aaKnown RBP21.24■□□□□ 0.99
HDAC6-235ENST00000495515 ZNF277Q9NRM2 450 aaPredicted RBP21.24■□□□□ 0.99
HDAC6-235ENST00000495515 RIPOR2Q9Y4F9 1068 aa21.24■□□□□ 0.99
HDAC6-235ENST00000495515 LRRC37AA6NMS7 1700 aa21.24■□□□□ 0.99
HDAC6-235ENST00000495515 IL15P40933 162 aaPredicted RBP21.23■□□□□ 0.99
HDAC6-235ENST00000495515 IARSP41252 1262 aaKnown RBP21.23■□□□□ 0.99
HDAC6-235ENST00000495515 LRRC24Q50LG9 513 aa21.23■□□□□ 0.99
HDAC6-235ENST00000495515 SIL1Q9H173 461 aa21.23■□□□□ 0.99
HDAC6-235ENST00000495515 RNF181Q9P0P0 153 aa21.23■□□□□ 0.99
HDAC6-235ENST00000495515 PPIP5K2O43314 1243 aa21.22■□□□□ 0.99
HDAC6-235ENST00000495515 G3BP1Q13283 466 aaKnown RBP eCLIP21.22■□□□□ 0.99
HDAC6-235ENST00000495515 WASHC4Q2M389 1173 aa21.22■□□□□ 0.99
HDAC6-235ENST00000495515 C9orf131Q5VYM1 1079 aa21.22■□□□□ 0.99
HDAC6-235ENST00000495515 LARGE2Q8N3Y3 721 aa21.22■□□□□ 0.99
HDAC6-235ENST00000495515 JDP2Q8WYK2 163 aa21.22■□□□□ 0.99
HDAC6-235ENST00000495515 ZC3H12CQ9C0D7 883 aaKnown RBP21.22■□□□□ 0.99
HDAC6-235ENST00000495515 POLLQ9UGP5 575 aa21.22■□□□□ 0.99
HDAC6-235ENST00000495515 PA2G4Q9UQ80 394 aaKnown RBP21.22■□□□□ 0.99
HDAC6-235ENST00000495515 HELBQ8NG08 1087 aaPredicted RBP21.21■□□□□ 0.99
HDAC6-235ENST00000495515 FER1L6Q2WGJ9 1857 aa21.21■□□□□ 0.99
HDAC6-235ENST00000495515 ZNF804BA4D1E1 1349 aa21.21■□□□□ 0.99
HDAC6-235ENST00000495515 TAF5LO75529 589 aa21.2■□□□□ 0.98
HDAC6-235ENST00000495515 SURF6O75683 361 aaKnown RBP21.2■□□□□ 0.98
HDAC6-235ENST00000495515 KIAA2012Q0VF49 1180 aa21.2■□□□□ 0.98
HDAC6-235ENST00000495515 OS9Q13438 667 aaPredicted RBP21.2■□□□□ 0.98
HDAC6-235ENST00000495515 CEP126Q9P2H0 1117 aa21.2■□□□□ 0.98
HDAC6-235ENST00000495515 GOLGB1Q14789 3259 aaKnown RBP21.2■□□□□ 0.98
HDAC6-235ENST00000495515 PDE8BO95263 885 aa21.19■□□□□ 0.98
HDAC6-235ENST00000495515 UBE4AQ14139 1066 aa21.19■□□□□ 0.98
HDAC6-235ENST00000495515 HSP90AB4PQ58FF6 505 aa21.19■□□□□ 0.98
HDAC6-235ENST00000495515 ATG9AQ7Z3C6 839 aa21.19■□□□□ 0.98
HDAC6-235ENST00000495515 ZC3H4Q9UPT8 1303 aaKnown RBP21.19■□□□□ 0.98
HDAC6-235ENST00000495515 G3V3G9 751 aa21.18■□□□□ 0.98
HDAC6-235ENST00000495515 AOC3Q16853 763 aa21.18■□□□□ 0.98
HDAC6-235ENST00000495515 DCAF8Q5TAQ9 597 aa21.18■□□□□ 0.98
HDAC6-235ENST00000495515 NIM1KQ8IY84 436 aa21.18■□□□□ 0.98
HDAC6-235ENST00000495515 NOP58Q9Y2X3 529 aaKnown RBP21.18■□□□□ 0.98
HDAC6-235ENST00000495515 RIMBP2O15034 1052 aa21.17■□□□□ 0.98
HDAC6-235ENST00000495515 PRELPP51888 382 aa21.17■□□□□ 0.98
HDAC6-235ENST00000495515 EXOC6Q8TAG9 804 aa21.17■□□□□ 0.98
HDAC6-235ENST00000495515 MED23Q9ULK4 1368 aa21.17■□□□□ 0.98
HDAC6-235ENST00000495515 SPEF2Q9C093 1822 aa21.16■□□□□ 0.98
HDAC6-235ENST00000495515 DUOX1Q9NRD9 1551 aa21.16■□□□□ 0.98
HDAC6-235ENST00000495515 PUM3Q15397 648 aaKnown RBP21.16■□□□□ 0.98
HDAC6-235ENST00000495515 ERC1Q8IUD2 1116 aa21.16■□□□□ 0.98
HDAC6-235ENST00000495515 SIRT2Q8IXJ6 389 aa21.16■□□□□ 0.98
HDAC6-235ENST00000495515 VGLL2Q8N8G2 317 aa21.16■□□□□ 0.98
HDAC6-235ENST00000495515 AKAP2Q9Y2D5 859 aa21.16■□□□□ 0.98
HDAC6-235ENST00000495515 IFIT1P09914 478 aaKnown RBP21.15■□□□□ 0.98
HDAC6-235ENST00000495515 IRX6P78412 446 aaPredicted RBP21.15■□□□□ 0.98
HDAC6-235ENST00000495515 C15orf52Q6ZUT6 534 aaKnown RBP21.15■□□□□ 0.98
HDAC6-235ENST00000495515 LPIN2Q92539 896 aa21.14■□□□□ 0.97
HDAC6-235ENST00000495515 GPR101Q96P66 508 aaPredicted RBP21.14■□□□□ 0.97
HDAC6-235ENST00000495515 ZNRF3Q9ULT6 936 aa21.14■□□□□ 0.97
HDAC6-235ENST00000495515 PCDHB15Q9Y5E8 787 aa21.14■□□□□ 0.97
HDAC6-235ENST00000495515 LTBP1Q14766 1721 aa21.14■□□□□ 0.97
HDAC6-235ENST00000495515 NEFLP07196 543 aa21.13■□□□□ 0.97
HDAC6-235ENST00000495515 SLC5A1P13866 664 aa21.13■□□□□ 0.97
HDAC6-235ENST00000495515 EIF6P56537 245 aaKnown RBP21.13■□□□□ 0.97
HDAC6-235ENST00000495515 WTIPA6NIX2 430 aaPredicted RBP21.12■□□□□ 0.97
HDAC6-235ENST00000495515 SNAP23O00161 211 aa21.12■□□□□ 0.97
HDAC6-235ENST00000495515 RAB11FIP3O75154 756 aa21.12■□□□□ 0.97
HDAC6-235ENST00000495515 TFCP2Q12800 502 aa21.12■□□□□ 0.97
HDAC6-235ENST00000495515 ATP2B3Q16720 1220 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms