RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 CASP7P55210 303 aa12.49□□□□□ -0.41
HDAC3-214ENST00000495485 CCDC57Q2TAC2 916 aa12.49□□□□□ -0.41
HDAC3-214ENST00000495485 DALRD3Q5D0E6 543 aaKnown RBP12.49□□□□□ -0.41
HDAC3-214ENST00000495485 CC2D2BQ6DHV5 1058 aa12.49□□□□□ -0.41
HDAC3-214ENST00000495485 LMBR1LQ6UX01 489 aa12.49□□□□□ -0.41
HDAC3-214ENST00000495485 C2CD5Q86YS7 1000 aa12.49□□□□□ -0.41
HDAC3-214ENST00000495485 TTLL6Q8N841 843 aa12.49□□□□□ -0.41
HDAC3-214ENST00000495485 RILPL2Q969X0 211 aa12.49□□□□□ -0.41
HDAC3-214ENST00000495485 KAZALD1Q96I82 304 aa12.49□□□□□ -0.41
HDAC3-214ENST00000495485 PLA2G12BQ9BX93 195 aa12.49□□□□□ -0.41
HDAC3-214ENST00000495485 ECHDC1Q9NTX5 307 aa12.49□□□□□ -0.41
HDAC3-214ENST00000495485 CHMP3Q9Y3E7 222 aa12.49□□□□□ -0.41
HDAC3-214ENST00000495485 DDX60Q8IY21 1712 aaKnown RBP12.48□□□□□ -0.41
HDAC3-214ENST00000495485 PDE8AO60658 829 aa12.48□□□□□ -0.41
HDAC3-214ENST00000495485 DPEP1P16444 411 aa12.48□□□□□ -0.41
HDAC3-214ENST00000495485 MCCP23508 829 aa12.48□□□□□ -0.41
HDAC3-214ENST00000495485 SF3B3Q15393 1217 aaKnown RBP12.48□□□□□ -0.41
HDAC3-214ENST00000495485 ERFEQ4G0M1 354 aa12.48□□□□□ -0.41
HDAC3-214ENST00000495485 TAF7LQ5H9L4 462 aa12.48□□□□□ -0.41
HDAC3-214ENST00000495485 RUFY2Q8WXA3 655 aa12.48□□□□□ -0.41
HDAC3-214ENST00000495485 RPGRQ92834 1020 aaKnown RBP12.48□□□□□ -0.41
HDAC3-214ENST00000495485 RBM17Q96I25 401 aaKnown RBP12.48□□□□□ -0.41
HDAC3-214ENST00000495485 CRAMP1Q96RY5 1269 aa12.48□□□□□ -0.41
HDAC3-214ENST00000495485 IRS4O14654 1257 aaPredicted RBP12.47□□□□□ -0.41
HDAC3-214ENST00000495485 IL15P40933 162 aaPredicted RBP12.47□□□□□ -0.41
HDAC3-214ENST00000495485 FOXO4P98177 505 aa12.47□□□□□ -0.41
HDAC3-214ENST00000495485 CCDC152Q4G0S7 254 aa12.47□□□□□ -0.41
HDAC3-214ENST00000495485 AACSQ86V21 672 aa12.47□□□□□ -0.41
HDAC3-214ENST00000495485 NUTM1Q86Y26 1132 aa12.47□□□□□ -0.41
HDAC3-214ENST00000495485 NLGN2Q8NFZ4 835 aa12.47□□□□□ -0.41
HDAC3-214ENST00000495485 OTUD7AQ8TE49 926 aaPredicted RBP12.47□□□□□ -0.41
HDAC3-214ENST00000495485 TMX4Q9H1E5 349 aaPredicted RBP12.47□□□□□ -0.41
HDAC3-214ENST00000495485 GPR108Q9NPR9 543 aa12.47□□□□□ -0.41
HDAC3-214ENST00000495485 PA2G4Q9UQ80 394 aaKnown RBP12.47□□□□□ -0.41
HDAC3-214ENST00000495485 COL11A2P13942 1736 aaPredicted RBP12.47□□□□□ -0.41
HDAC3-214ENST00000495485 RTL9Q8NET4 1388 aa12.46□□□□□ -0.41
HDAC3-214ENST00000495485 ABCC12Q96J65 1359 aa12.46□□□□□ -0.41
HDAC3-214ENST00000495485 A0A0G2JLW4 131 aa12.46□□□□□ -0.41
HDAC3-214ENST00000495485 FAM177BA6PVY3 158 aa12.46□□□□□ -0.41
HDAC3-214ENST00000495485 BBOX1O75936 387 aa12.46□□□□□ -0.41
HDAC3-214ENST00000495485 CIAO1O76071 339 aa12.46□□□□□ -0.41
HDAC3-214ENST00000495485 KCNA3P22001 575 aa12.46□□□□□ -0.41
HDAC3-214ENST00000495485 PTPN12Q05209 780 aaKnown RBP12.46□□□□□ -0.41
HDAC3-214ENST00000495485 GPR162Q16538 588 aa12.46□□□□□ -0.41
HDAC3-214ENST00000495485 DDX46Q7L014 1031 aaKnown RBP12.46□□□□□ -0.41
HDAC3-214ENST00000495485 TICAM2Q86XR7 235 aa12.46□□□□□ -0.41
HDAC3-214ENST00000495485 SIL1Q9H173 461 aa12.46□□□□□ -0.41
HDAC3-214ENST00000495485 AKAP2Q9Y2D5 859 aa12.46□□□□□ -0.41
HDAC3-214ENST00000495485 SASH1O94885 1247 aa12.45□□□□□ -0.42
HDAC3-214ENST00000495485 RFX5P48382 616 aaPredicted RBP12.45□□□□□ -0.42
HDAC3-214ENST00000495485 IFIT5Q13325 482 aaKnown RBP12.45□□□□□ -0.42
HDAC3-214ENST00000495485 EPHA10Q5JZY3 1008 aa12.45□□□□□ -0.42
HDAC3-214ENST00000495485 EVI5LQ96CN4 794 aa12.45□□□□□ -0.42
HDAC3-214ENST00000495485 FAM89AQ96GI7 184 aa12.45□□□□□ -0.42
HDAC3-214ENST00000495485 CACNA1SQ13698 1873 aa12.44□□□□□ -0.42
HDAC3-214ENST00000495485 HSCBQ8IWL3 235 aa12.44□□□□□ -0.42
HDAC3-214ENST00000495485 ZNF622Q969S3 477 aaKnown RBP eCLIP12.44□□□□□ -0.42
HDAC3-214ENST00000495485 CEP126Q9P2H0 1117 aa12.44□□□□□ -0.42
HDAC3-214ENST00000495485 TNRC6CQ9HCJ0 1690 aaKnown RBP12.44□□□□□ -0.42
HDAC3-214ENST00000495485 SLX4Q8IY92 1834 aa12.44□□□□□ -0.42
HDAC3-214ENST00000495485 FER1L6Q2WGJ9 1857 aa12.43□□□□□ -0.42
HDAC3-214ENST00000495485 ANKRD18BA2A2Z9 1011 aa12.43□□□□□ -0.42
HDAC3-214ENST00000495485 EYA2O00167 538 aa12.43□□□□□ -0.42
HDAC3-214ENST00000495485 CSF1RP07333 972 aa12.43□□□□□ -0.42
HDAC3-214ENST00000495485 TNNI3KQ59H18 835 aa12.43□□□□□ -0.42
HDAC3-214ENST00000495485 RTL5Q5HYW3 569 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-214ENST00000495485 KIAA1211Q6ZU35 1233 aa12.43□□□□□ -0.42
HDAC3-214ENST00000495485 PI4K2BQ8TCG2 481 aa12.43□□□□□ -0.42
HDAC3-214ENST00000495485 JARID2Q92833 1246 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-214ENST00000495485 CDC5LQ99459 802 aaKnown RBP12.43□□□□□ -0.42
HDAC3-214ENST00000495485 BCS1LQ9Y276 419 aa12.43□□□□□ -0.42
HDAC3-214ENST00000495485 FPGT-TNNI3KV9GXZ4 949 aa12.43□□□□□ -0.42
HDAC3-214ENST00000495485 LTBP3Q9NS15 1303 aa12.42□□□□□ -0.42
HDAC3-214ENST00000495485 HCLS1P14317 486 aaPredicted RBP12.42□□□□□ -0.42
HDAC3-214ENST00000495485 CHMLP26374 656 aa12.42□□□□□ -0.42
HDAC3-214ENST00000495485 CHRNA5P30532 468 aa12.42□□□□□ -0.42
HDAC3-214ENST00000495485 CTSWP56202 376 aa12.42□□□□□ -0.42
HDAC3-214ENST00000495485 GRAPQ13588 217 aa12.42□□□□□ -0.42
HDAC3-214ENST00000495485 LRRFIP1Q32MZ4 808 aaKnown RBP12.42□□□□□ -0.42
HDAC3-214ENST00000495485 PRPF40BQ6NWY9 871 aaKnown RBP12.42□□□□□ -0.42
HDAC3-214ENST00000495485 RTKN2Q8IZC4 609 aa12.42□□□□□ -0.42
HDAC3-214ENST00000495485 GRAPLQ8TC17 118 aaPredicted RBP12.42□□□□□ -0.42
HDAC3-214ENST00000495485 ESYT1Q9BSJ8 1104 aa12.42□□□□□ -0.42
HDAC3-214ENST00000495485 VPS33BQ9H267 617 aa12.42□□□□□ -0.42
HDAC3-214ENST00000495485 DIAPH3Q9NSV4 1193 aa12.42□□□□□ -0.42
HDAC3-214ENST00000495485 DICER1Q9UPY3 1922 aaKnown RBP12.42□□□□□ -0.42
HDAC3-214ENST00000495485 ZC3H4Q9UPT8 1303 aaKnown RBP12.41□□□□□ -0.42
HDAC3-214ENST00000495485 SBF1O95248 1867 aa12.41□□□□□ -0.42
HDAC3-214ENST00000495485 ATP5JP18859 108 aa12.41□□□□□ -0.42
HDAC3-214ENST00000495485 TFCP2Q12800 502 aa12.41□□□□□ -0.42
HDAC3-214ENST00000495485 RABEP1Q15276 862 aa12.41□□□□□ -0.42
HDAC3-214ENST00000495485 CCDC93Q567U6 631 aa12.41□□□□□ -0.42
HDAC3-214ENST00000495485 SNX21Q969T3 373 aa12.41□□□□□ -0.42
HDAC3-214ENST00000495485 EAF2Q96CJ1 260 aaPredicted RBP12.41□□□□□ -0.42
HDAC3-214ENST00000495485 USP26Q9BXU7 913 aa12.41□□□□□ -0.42
HDAC3-214ENST00000495485 CCDC8Q9H0W5 538 aaPredicted RBP12.41□□□□□ -0.42
HDAC3-214ENST00000495485 CCDC158Q5M9N0 1113 aa12.4□□□□□ -0.42
HDAC3-214ENST00000495485 TTLL11Q8NHH1 800 aa12.4□□□□□ -0.42
HDAC3-214ENST00000495485 KLHDC4Q8TBB5 520 aa12.4□□□□□ -0.42
HDAC3-214ENST00000495485 LRRC37AA6NMS7 1700 aa12.4□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms