RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 ABCC6O95255 1503 aa11.31□□□□□ -0.6
SYNE1-230ENST00000495090 EIF4A1P60842 406 aaKnown RBP11.31□□□□□ -0.6
SYNE1-230ENST00000495090 ERCC6LQ2NKX8 1250 aa11.31□□□□□ -0.6
SYNE1-230ENST00000495090 TAF7LQ5H9L4 462 aa11.31□□□□□ -0.6
SYNE1-230ENST00000495090 DDX54Q8TDD1 881 aaKnown RBP11.31□□□□□ -0.6
SYNE1-230ENST00000495090 IPO4Q8TEX9 1081 aaKnown RBP11.31□□□□□ -0.6
SYNE1-230ENST00000495090 TSPOAP1O95153 1857 aa11.3□□□□□ -0.6
SYNE1-230ENST00000495090 UTYO14607 1347 aa11.3□□□□□ -0.6
SYNE1-230ENST00000495090 NUTM2FA1L443 756 aa11.3□□□□□ -0.6
SYNE1-230ENST00000495090 JAK2O60674 1132 aa11.3□□□□□ -0.6
SYNE1-230ENST00000495090 TAF5LO75529 589 aa11.3□□□□□ -0.6
SYNE1-230ENST00000495090 PLA2G4AP47712 749 aa11.3□□□□□ -0.6
SYNE1-230ENST00000495090 NUTM2GQ5VZR2 741 aa11.3□□□□□ -0.6
SYNE1-230ENST00000495090 TXLNBQ8N3L3 684 aa11.3□□□□□ -0.6
SYNE1-230ENST00000495090 NEK1Q96PY6 1258 aa11.3□□□□□ -0.6
SYNE1-230ENST00000495090 UBXN6Q9BZV1 441 aa11.3□□□□□ -0.6
SYNE1-230ENST00000495090 GOLPH3LQ9H4A5 285 aa11.3□□□□□ -0.6
SYNE1-230ENST00000495090 PIK3C2AO00443 1686 aa11.3□□□□□ -0.6
SYNE1-230ENST00000495090 A0A1W2PQ27 194 aa11.29□□□□□ -0.6
SYNE1-230ENST00000495090 A0A1W2PQ64 194 aa11.29□□□□□ -0.6
SYNE1-230ENST00000495090 A0A1W2PQD8 194 aa11.29□□□□□ -0.6
SYNE1-230ENST00000495090 ERICH4A6NGS2 130 aa11.29□□□□□ -0.6
SYNE1-230ENST00000495090 SFPQP23246 707 aaKnown RBP eCLIP11.29□□□□□ -0.6
SYNE1-230ENST00000495090 ETF1P62495 437 aaKnown RBP11.29□□□□□ -0.6
SYNE1-230ENST00000495090 COL9A3Q14050 684 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-230ENST00000495090 TMCO3Q6UWJ1 677 aa11.29□□□□□ -0.6
SYNE1-230ENST00000495090 AOPEPQ8N6M6 819 aa11.29□□□□□ -0.6
SYNE1-230ENST00000495090 CHMP4CQ96CF2 233 aa11.29□□□□□ -0.6
SYNE1-230ENST00000495090 FSD1Q9BTV5 496 aa11.29□□□□□ -0.6
SYNE1-230ENST00000495090 ST7Q9NRC1 585 aa11.29□□□□□ -0.6
SYNE1-230ENST00000495090 CHPF2Q9P2E5 772 aa11.29□□□□□ -0.6
SYNE1-230ENST00000495090 PFKFB2O60825 505 aa11.29□□□□□ -0.6
SYNE1-230ENST00000495090 HMGB1P09429 215 aaKnown RBP11.29□□□□□ -0.6
SYNE1-230ENST00000495090 STK3Q13188 491 aa11.29□□□□□ -0.6
SYNE1-230ENST00000495090 ARHGAP29Q52LW3 1261 aa11.29□□□□□ -0.6
SYNE1-230ENST00000495090 SYT10Q6XYQ8 523 aa11.29□□□□□ -0.6
SYNE1-230ENST00000495090 TCEANC2Q96MN5 208 aa11.29□□□□□ -0.6
SYNE1-230ENST00000495090 ORC3Q9UBD5 711 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-230ENST00000495090 U3KPZ7 1027 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-230ENST00000495090 ADAMTS13Q76LX8 1427 aa11.28□□□□□ -0.6
SYNE1-230ENST00000495090 DIP2BQ9P265 1576 aa11.28□□□□□ -0.6
SYNE1-230ENST00000495090 EFCAB8A8MWE9 144 aa11.28□□□□□ -0.6
SYNE1-230ENST00000495090 ZBTB22O15209 634 aa11.28□□□□□ -0.6
SYNE1-230ENST00000495090 SASH1O94885 1247 aa11.28□□□□□ -0.6
SYNE1-230ENST00000495090 CAPN2P17655 700 aa11.28□□□□□ -0.6
SYNE1-230ENST00000495090 HNRNPH2P55795 449 aaKnown RBP11.28□□□□□ -0.6
SYNE1-230ENST00000495090 CCDC158Q5M9N0 1113 aa11.28□□□□□ -0.6
SYNE1-230ENST00000495090 ARMCX5Q6P1M9 558 aa11.28□□□□□ -0.6
SYNE1-230ENST00000495090 FCHSD1Q86WN1 690 aa11.28□□□□□ -0.6
SYNE1-230ENST00000495090 FMR1NBQ8N0W7 255 aaPredicted RBP11.28□□□□□ -0.6
SYNE1-230ENST00000495090 UBXN4Q92575 508 aa11.28□□□□□ -0.6
SYNE1-230ENST00000495090 EAF2Q96CJ1 260 aaPredicted RBP11.28□□□□□ -0.6
SYNE1-230ENST00000495090 TAF6LQ9Y6J9 622 aa11.28□□□□□ -0.6
SYNE1-230ENST00000495090 HOXC9P31274 260 aa11.27□□□□□ -0.6
SYNE1-230ENST00000495090 PSME1Q06323 249 aa11.27□□□□□ -0.6
SYNE1-230ENST00000495090 G3BP1Q13283 466 aaKnown RBP eCLIP11.27□□□□□ -0.6
SYNE1-230ENST00000495090 MAPK8IP2Q13387 824 aaPredicted RBP11.27□□□□□ -0.6
SYNE1-230ENST00000495090 Q6ZUG5 572 aa11.27□□□□□ -0.6
SYNE1-230ENST00000495090 ZNF589Q86UQ0 364 aaPredicted RBP11.27□□□□□ -0.6
SYNE1-230ENST00000495090 FSIP1Q8NA03 581 aa11.27□□□□□ -0.6
SYNE1-230ENST00000495090 NSUN7Q8NE18 718 aaKnown RBP11.27□□□□□ -0.6
SYNE1-230ENST00000495090 MRPS27Q92552 414 aaKnown RBP11.27□□□□□ -0.6
SYNE1-230ENST00000495090 C9orf78Q9NZ63 289 aaPredicted RBP11.27□□□□□ -0.6
SYNE1-230ENST00000495090 DBF4Q9UBU7 674 aaPredicted RBP11.27□□□□□ -0.6
SYNE1-230ENST00000495090 DNAI1Q9UI46 699 aa11.27□□□□□ -0.6
SYNE1-230ENST00000495090 NAP1L2Q9ULW6 460 aaPredicted RBP11.27□□□□□ -0.6
SYNE1-230ENST00000495090 SALL1Q9NSC2 1324 aa11.27□□□□□ -0.61
SYNE1-230ENST00000495090 TADA3O75528 432 aa11.27□□□□□ -0.61
SYNE1-230ENST00000495090 SCRN1Q12765 414 aa11.27□□□□□ -0.61
SYNE1-230ENST00000495090 ADALQ6DHV7 355 aa11.27□□□□□ -0.61
SYNE1-230ENST00000495090 TICAM2Q86XR7 235 aa11.27□□□□□ -0.61
SYNE1-230ENST00000495090 USP28Q96RU2 1077 aa11.27□□□□□ -0.61
SYNE1-230ENST00000495090 AGXT2Q9BYV1 514 aa11.27□□□□□ -0.61
SYNE1-230ENST00000495090 PA2G4Q9UQ80 394 aaKnown RBP11.27□□□□□ -0.61
SYNE1-230ENST00000495090 IKBKBO14920 756 aa11.26□□□□□ -0.61
SYNE1-230ENST00000495090 SOX12O15370 315 aa11.26□□□□□ -0.61
SYNE1-230ENST00000495090 MYO1BO43795 1136 aa11.26□□□□□ -0.61
SYNE1-230ENST00000495090 EIF2S2P20042 333 aaKnown RBP11.26□□□□□ -0.61
SYNE1-230ENST00000495090 GPS2Q13227 327 aa11.26□□□□□ -0.61
SYNE1-230ENST00000495090 LRRFIP1Q32MZ4 808 aaKnown RBP11.26□□□□□ -0.61
SYNE1-230ENST00000495090 KSR2Q6VAB6 950 aa11.26□□□□□ -0.61
SYNE1-230ENST00000495090 DDX11Q96FC9 970 aa11.26□□□□□ -0.61
SYNE1-230ENST00000495090 XPO4Q9C0E2 1151 aaKnown RBP11.26□□□□□ -0.61
SYNE1-230ENST00000495090 RTEL1Q9NZ71 1219 aa11.26□□□□□ -0.61
SYNE1-230ENST00000495090 KIAA1468Q9P260 1216 aa11.26□□□□□ -0.61
SYNE1-230ENST00000495090 TMEM2Q9UHN6 1383 aa11.26□□□□□ -0.61
SYNE1-230ENST00000495090 MARF1Q9Y4F3 1742 aaKnown RBP11.25□□□□□ -0.61
SYNE1-230ENST00000495090 OVOS2A0A0G2JMS6 1433 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 HSP90B1P14625 803 aaKnown RBP11.25□□□□□ -0.61
SYNE1-230ENST00000495090 RAD51AP2Q09MP3 1159 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 TMC6Q7Z403 805 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 TMX1Q9H3N1 280 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 PSD3Q9NYI0 1048 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 LMO7Q8WWI1 1683 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 SMC2O95347 1197 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 ME1P48163 572 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 NLRP12P59046 1061 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 ZRSR1Q15695 479 aaKnown RBP11.25□□□□□ -0.61
SYNE1-230ENST00000495090 TRIM65Q6PJ69 517 aa11.25□□□□□ -0.61
SYNE1-230ENST00000495090 LRRN4CLQ8ND94 238 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms