RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 DIEXFQ68CQ4 756 aaKnown RBP42.17■■■■■ 4.34
CBX4-203ENST00000494546 MRPL50Q8N5N7 158 aaKnown RBP42.17■■■■■ 4.34
CBX4-203ENST00000494546 GMPSP49915 693 aaPredicted RBP42.16■■■■■ 4.34
CBX4-203ENST00000494546 DOK7Q18PE1 504 aa42.16■■■■■ 4.34
CBX4-203ENST00000494546 ZC3H12CQ9C0D7 883 aaKnown RBP42.16■■■■■ 4.34
CBX4-203ENST00000494546 GPRC5DQ9NZD1 345 aa42.15■■■■■ 4.34
CBX4-203ENST00000494546 XDHP47989 1333 aa42.15■■■■■ 4.34
CBX4-203ENST00000494546 FAM161AQ3B820 660 aa42.14■■■■■ 4.34
CBX4-203ENST00000494546 BCL2L13Q9BXK5 485 aa42.14■■■■■ 4.34
CBX4-203ENST00000494546 BSDC1Q9NW68 430 aaPredicted RBP42.14■■■■■ 4.34
CBX4-203ENST00000494546 ITGA6P23229 1130 aa42.13■■■■■ 4.33
CBX4-203ENST00000494546 ECE2O60344 883 aa42.12■■■■■ 4.33
CBX4-203ENST00000494546 CSF1RP07333 972 aa42.12■■■■■ 4.33
CBX4-203ENST00000494546 IGHMBP2P38935 993 aaKnown RBP42.12■■■■■ 4.33
CBX4-203ENST00000494546 SSH1Q8WYL5 1049 aa42.12■■■■■ 4.33
CBX4-203ENST00000494546 ADAMTSL1Q8N6G6 1762 aa42.11■■■■■ 4.33
CBX4-203ENST00000494546 MAP1SQ66K74 1059 aaPredicted RBP42.11■■■■■ 4.33
CBX4-203ENST00000494546 MIER1Q8N108 512 aa42.11■■■■■ 4.33
CBX4-203ENST00000494546 SRCIN1Q9C0H9 1055 aa42.11■■■■■ 4.33
CBX4-203ENST00000494546 G3V3G9 751 aa42.1■■■■■ 4.33
CBX4-203ENST00000494546 GRM8O00222 908 aa42.1■■■■■ 4.33
CBX4-203ENST00000494546 ALDH1L1O75891 902 aa42.1■■■■■ 4.33
CBX4-203ENST00000494546 DCAF8Q5TAQ9 597 aa42.1■■■■■ 4.33
CBX4-203ENST00000494546 C9orf78Q9NZ63 289 aaPredicted RBP42.1■■■■■ 4.33
CBX4-203ENST00000494546 MINPP1Q9UNW1 487 aa42.1■■■■■ 4.33
CBX4-203ENST00000494546 ATP2B4P23634 1241 aa42.09■■■■■ 4.33
CBX4-203ENST00000494546 USP50Q70EL3 339 aaPredicted RBP42.09■■■■■ 4.33
CBX4-203ENST00000494546 TRMT2AQ8IZ69 625 aaKnown RBP42.09■■■■■ 4.33
CBX4-203ENST00000494546 KLRG1Q96E93 195 aa42.09■■■■■ 4.33
CBX4-203ENST00000494546 SPEF2Q9C093 1822 aa42.09■■■■■ 4.33
CBX4-203ENST00000494546 ADARB2Q9NS39 739 aaKnown RBP42.08■■■■■ 4.33
CBX4-203ENST00000494546 PSMD14O00487 310 aa42.07■■■■■ 4.33
CBX4-203ENST00000494546 FOXO4P98177 505 aa42.07■■■■■ 4.33
CBX4-203ENST00000494546 CNTROBQ8N137 903 aa42.07■■■■■ 4.33
CBX4-203ENST00000494546 PASKQ96RG2 1323 aa42.06■■■■■ 4.32
CBX4-203ENST00000494546 ITGBL1O95965 494 aaPredicted RBP42.06■■■■■ 4.32
CBX4-203ENST00000494546 MPHOSPH8Q99549 860 aa42.06■■■■■ 4.32
CBX4-203ENST00000494546 KCNQ5Q9NR82 932 aa42.06■■■■■ 4.32
CBX4-203ENST00000494546 CHMP3Q9Y3E7 222 aa42.06■■■■■ 4.32
CBX4-203ENST00000494546 PTPRCP08575 1304 aa42.05■■■■■ 4.32
CBX4-203ENST00000494546 ZBTB12Q9Y330 459 aaPredicted RBP42.05■■■■■ 4.32
CBX4-203ENST00000494546 ANKRD18BA2A2Z9 1011 aa42.04■■■■■ 4.32
CBX4-203ENST00000494546 WTIPA6NIX2 430 aaPredicted RBP42.03■■■■■ 4.32
CBX4-203ENST00000494546 ALDH1L2Q3SY69 923 aa42.03■■■■■ 4.32
CBX4-203ENST00000494546 CREBZFQ9NS37 354 aa42.02■■■■■ 4.32
CBX4-203ENST00000494546 SMC4Q9NTJ3 1288 aa42.02■■■■■ 4.32
CBX4-203ENST00000494546 CNOT7Q9UIV1 285 aaKnown RBP42.02■■■■■ 4.32
CBX4-203ENST00000494546 CCT4P50991 539 aaKnown RBP42.01■■■■■ 4.32
CBX4-203ENST00000494546 IFIT5Q13325 482 aaKnown RBP42.01■■■■■ 4.32
CBX4-203ENST00000494546 EPHA10Q5JZY3 1008 aa42.01■■■■■ 4.32
CBX4-203ENST00000494546 LMBR1LQ6UX01 489 aa42.01■■■■■ 4.32
CBX4-203ENST00000494546 SHTN1A0MZ66 631 aa41.99■■■■■ 4.31
CBX4-203ENST00000494546 MICALL2Q8IY33 904 aa41.99■■■■■ 4.31
CBX4-203ENST00000494546 H7C1D1 291 aa41.98■■■■■ 4.31
CBX4-203ENST00000494546 DPF2Q92785 391 aa41.98■■■■■ 4.31
CBX4-203ENST00000494546 CT47B1P0C2W7 299 aaPredicted RBP41.97■■■■■ 4.31
CBX4-203ENST00000494546 ANKRD2Q9GZV1 360 aa41.97■■■■■ 4.31
CBX4-203ENST00000494546 MED23Q9ULK4 1368 aa41.96■■■■■ 4.31
CBX4-203ENST00000494546 NBPF7P0C2Y1 421 aaPredicted RBP41.95■■■■■ 4.31
CBX4-203ENST00000494546 RPS12P25398 132 aaKnown RBP41.95■■■■■ 4.31
CBX4-203ENST00000494546 SUCLG2Q96I99 432 aa41.95■■■■■ 4.31
CBX4-203ENST00000494546 LEMD3Q9Y2U8 911 aa41.95■■■■■ 4.31
CBX4-203ENST00000494546 CCDC57Q2TAC2 916 aa41.94■■■■■ 4.3
CBX4-203ENST00000494546 TRPM4Q8TD43 1214 aa41.94■■■■■ 4.3
CBX4-203ENST00000494546 TMEM88BA6NKF7 163 aa41.93■■■■■ 4.3
CBX4-203ENST00000494546 VIL1P09327 827 aaKnown RBP41.93■■■■■ 4.3
CBX4-203ENST00000494546 CHRNDQ07001 517 aa41.93■■■■■ 4.3
CBX4-203ENST00000494546 SCN9AQ15858 1988 aa41.92■■■■■ 4.3
CBX4-203ENST00000494546 HIRAP54198 1017 aaPredicted RBP41.92■■■■■ 4.3
CBX4-203ENST00000494546 TAF7LQ5H9L4 462 aa41.92■■■■■ 4.3
CBX4-203ENST00000494546 ZNF804BA4D1E1 1349 aa41.92■■■■■ 4.3
CBX4-203ENST00000494546 KCNJ4P48050 445 aa41.91■■■■■ 4.3
CBX4-203ENST00000494546 PODNQ7Z5L7 613 aa41.91■■■■■ 4.3
CBX4-203ENST00000494546 UTYO14607 1347 aa41.91■■■■■ 4.3
CBX4-203ENST00000494546 JMYQ8N9B5 988 aa41.9■■■■■ 4.3
CBX4-203ENST00000494546 ZNF594Q96JF6 807 aaPredicted RBP41.9■■■■■ 4.3
CBX4-203ENST00000494546 MKRN1Q9UHC7 482 aaKnown RBP41.9■■■■■ 4.3
CBX4-203ENST00000494546 SAMD7Q7Z3H4 446 aa41.89■■■■■ 4.3
CBX4-203ENST00000494546 KAZALD1Q96I82 304 aa41.89■■■■■ 4.3
CBX4-203ENST00000494546 FMR1Q06787 632 aaKnown RBP eCLIP41.88■■■■■ 4.29
CBX4-203ENST00000494546 TBC1D10BQ4KMP7 808 aaPredicted RBP41.87■■■■■ 4.29
CBX4-203ENST00000494546 TXNRD3Q86VQ6 643 aa41.87■■■■■ 4.29
CBX4-203ENST00000494546 HELBQ8NG08 1087 aaPredicted RBP41.87■■■■■ 4.29
CBX4-203ENST00000494546 TRAF5O00463 557 aa41.86■■■■■ 4.29
CBX4-203ENST00000494546 TAF5LO75529 589 aa41.86■■■■■ 4.29
CBX4-203ENST00000494546 KLRK1P26718 216 aa41.86■■■■■ 4.29
CBX4-203ENST00000494546 RBM26Q5T8P6 1007 aaKnown RBP41.86■■■■■ 4.29
CBX4-203ENST00000494546 RSBN1LQ6PCB5 846 aaPredicted RBP41.86■■■■■ 4.29
CBX4-203ENST00000494546 ZC3H15Q8WU90 426 aaKnown RBP41.86■■■■■ 4.29
CBX4-203ENST00000494546 USP17L3A6NCW0 530 aa41.85■■■■■ 4.29
CBX4-203ENST00000494546 USP17L4A6NCW7 530 aa41.85■■■■■ 4.29
CBX4-203ENST00000494546 LDHAL6AQ6ZMR3 332 aa41.85■■■■■ 4.29
CBX4-203ENST00000494546 USP17L1Q7RTZ2 530 aa41.85■■■■■ 4.29
CBX4-203ENST00000494546 COA1Q9GZY4 146 aa41.85■■■■■ 4.29
CBX4-203ENST00000494546 PGAP2Q9UHJ9 254 aa41.85■■■■■ 4.29
CBX4-203ENST00000494546 NOB1Q9ULX3 412 aaKnown RBP41.85■■■■■ 4.29
CBX4-203ENST00000494546 BICC1Q9H694 974 aaKnown RBP41.84■■■■■ 4.29
CBX4-203ENST00000494546 CNNM1Q9NRU3 951 aa41.84■■■■■ 4.29
CBX4-203ENST00000494546 EGFRP00533 1210 aa41.83■■■■■ 4.29
CBX4-203ENST00000494546 HNRNPUQ00839 825 aaKnown RBP eCLIP41.83■■■■■ 4.29
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms