RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 ZNF853P0CG23 659 aa16.38■□□□□ 0.21
SKA1-205ENST00000494518 SAMD7Q7Z3H4 446 aa16.38■□□□□ 0.21
SKA1-205ENST00000494518 SEC31BQ9NQW1 1179 aa16.38■□□□□ 0.21
SKA1-205ENST00000494518 FOXD4L1Q9NU39 408 aa16.38■□□□□ 0.21
SKA1-205ENST00000494518 CDHR2Q9BYE9 1310 aa16.38■□□□□ 0.21
SKA1-205ENST00000494518 MYH3P11055 1940 aa16.37■□□□□ 0.21
SKA1-205ENST00000494518 H7C1D1 291 aa16.37■□□□□ 0.21
SKA1-205ENST00000494518 ECE2O60344 883 aa16.37■□□□□ 0.21
SKA1-205ENST00000494518 TBC1D10BQ4KMP7 808 aaPredicted RBP16.37■□□□□ 0.21
SKA1-205ENST00000494518 USP48Q86UV5 1035 aa16.37■□□□□ 0.21
SKA1-205ENST00000494518 C8orf58Q8NAV2 365 aa16.37■□□□□ 0.21
SKA1-205ENST00000494518 IFT57Q9NWB7 429 aa16.37■□□□□ 0.21
SKA1-205ENST00000494518 EGFRP00533 1210 aa16.36■□□□□ 0.21
SKA1-205ENST00000494518 RBM26Q5T8P6 1007 aaKnown RBP16.36■□□□□ 0.21
SKA1-205ENST00000494518 SAPCD2Q86UD0 394 aa16.36■□□□□ 0.21
SKA1-205ENST00000494518 BEGAINQ9BUH8 593 aa16.36■□□□□ 0.21
SKA1-205ENST00000494518 RTL9Q8NET4 1388 aa16.36■□□□□ 0.21
SKA1-205ENST00000494518 RPS8P62241 208 aaKnown RBP16.35■□□□□ 0.21
SKA1-205ENST00000494518 GNAI1P63096 354 aa16.35■□□□□ 0.21
SKA1-205ENST00000494518 TRIM28Q13263 835 aaKnown RBP16.35■□□□□ 0.21
SKA1-205ENST00000494518 ZBTB38Q8NAP3 1195 aaPredicted RBP16.35■□□□□ 0.21
SKA1-205ENST00000494518 TBC1D16Q8TBP0 767 aa16.35■□□□□ 0.21
SKA1-205ENST00000494518 PGAP2Q9UHJ9 254 aa16.35■□□□□ 0.21
SKA1-205ENST00000494518 PSME4Q14997 1843 aa16.35■□□□□ 0.21
SKA1-205ENST00000494518 UFL1O94874 794 aa16.34■□□□□ 0.21
SKA1-205ENST00000494518 CDC37L1Q7L3B6 337 aa16.34■□□□□ 0.21
SKA1-205ENST00000494518 ZC3H15Q8WU90 426 aaKnown RBP16.34■□□□□ 0.21
SKA1-205ENST00000494518 EYA3Q99504 573 aa16.34■□□□□ 0.21
SKA1-205ENST00000494518 ADM5C9JUS6 153 aa16.33■□□□□ 0.2
SKA1-205ENST00000494518 MYCNP04198 464 aaPredicted RBP16.33■□□□□ 0.2
SKA1-205ENST00000494518 TSPYL6Q8N831 410 aa16.33■□□□□ 0.2
SKA1-205ENST00000494518 ANKIB1Q9P2G1 1089 aa16.33■□□□□ 0.2
SKA1-205ENST00000494518 G3V3G9 751 aa16.32■□□□□ 0.2
SKA1-205ENST00000494518 CALD1Q05682 793 aaKnown RBP16.32■□□□□ 0.2
SKA1-205ENST00000494518 DCAF8Q5TAQ9 597 aa16.32■□□□□ 0.2
SKA1-205ENST00000494518 DPF2Q92785 391 aa16.32■□□□□ 0.2
SKA1-205ENST00000494518 TSR2Q969E8 191 aaKnown RBP16.32■□□□□ 0.2
SKA1-205ENST00000494518 ABHD8Q96I13 439 aa16.32■□□□□ 0.2
SKA1-205ENST00000494518 ZIC5Q96T25 663 aa16.32■□□□□ 0.2
SKA1-205ENST00000494518 ZC3H12CQ9C0D7 883 aaKnown RBP16.32■□□□□ 0.2
SKA1-205ENST00000494518 CWC25Q9NXE8 425 aaPredicted RBP16.32■□□□□ 0.2
SKA1-205ENST00000494518 ASTN2O75129 1339 aaPredicted RBP16.31■□□□□ 0.2
SKA1-205ENST00000494518 PCCAP05165 728 aaPredicted RBP16.31■□□□□ 0.2
SKA1-205ENST00000494518 MAP2K2P36507 400 aa16.31■□□□□ 0.2
SKA1-205ENST00000494518 HUNKP57058 714 aa16.31■□□□□ 0.2
SKA1-205ENST00000494518 CCDC152Q4G0S7 254 aa16.31■□□□□ 0.2
SKA1-205ENST00000494518 CCDC184Q52MB2 194 aa16.31■□□□□ 0.2
SKA1-205ENST00000494518 KRT26Q7Z3Y9 468 aa16.31■□□□□ 0.2
SKA1-205ENST00000494518 CCDC191Q8NCU4 936 aa16.31■□□□□ 0.2
SKA1-205ENST00000494518 METTL22Q9BUU2 404 aaPredicted RBP16.31■□□□□ 0.2
SKA1-205ENST00000494518 GGA1Q9UJY5 639 aa16.31■□□□□ 0.2
SKA1-205ENST00000494518 MAP3K2Q9Y2U5 619 aa16.31■□□□□ 0.2
SKA1-205ENST00000494518 PDE8AO60658 829 aa16.3■□□□□ 0.2
SKA1-205ENST00000494518 KIF4BQ2VIQ3 1234 aa16.3■□□□□ 0.2
SKA1-205ENST00000494518 CCDC30Q5VVM6 783 aa16.3■□□□□ 0.2
SKA1-205ENST00000494518 DDX58O95786 925 aaKnown RBP16.29■□□□□ 0.2
SKA1-205ENST00000494518 RPS12P25398 132 aaKnown RBP16.29■□□□□ 0.2
SKA1-205ENST00000494518 SAMD1Q6SPF0 538 aaPredicted RBP16.29■□□□□ 0.2
SKA1-205ENST00000494518 GGA3Q9NZ52 723 aa16.29■□□□□ 0.2
SKA1-205ENST00000494518 PODXL2Q9NZ53 605 aa16.29■□□□□ 0.2
SKA1-205ENST00000494518 AKAP11Q9UKA4 1901 aa16.29■□□□□ 0.2
SKA1-205ENST00000494518 WTIPA6NIX2 430 aaPredicted RBP16.28■□□□□ 0.2
SKA1-205ENST00000494518 ANKRD18AQ8IVF6 992 aa16.28■□□□□ 0.2
SKA1-205ENST00000494518 DCPSQ96C86 337 aaKnown RBP16.28■□□□□ 0.2
SKA1-205ENST00000494518 HHIPL1Q96JK4 782 aa16.28■□□□□ 0.2
SKA1-205ENST00000494518 GBA2Q9HCG7 927 aaPredicted RBP16.28■□□□□ 0.2
SKA1-205ENST00000494518 PI4KAP2A4QPH2 592 aa16.27■□□□□ 0.2
SKA1-205ENST00000494518 CCDC85CA6NKD9 419 aa16.27■□□□□ 0.2
SKA1-205ENST00000494518 IGKV5-2P06315 115 aa16.27■□□□□ 0.2
SKA1-205ENST00000494518 VIL1P09327 827 aaKnown RBP16.27■□□□□ 0.2
SKA1-205ENST00000494518 HSP90B1P14625 803 aaKnown RBP16.27■□□□□ 0.2
SKA1-205ENST00000494518 BRPF1P55201 1214 aaPredicted RBP16.27■□□□□ 0.2
SKA1-205ENST00000494518 CTSWP56202 376 aa16.27■□□□□ 0.2
SKA1-205ENST00000494518 CWF19L2Q2TBE0 894 aaKnown RBP16.27■□□□□ 0.2
SKA1-205ENST00000494518 G2E3Q7L622 706 aa16.27■□□□□ 0.2
SKA1-205ENST00000494518 PI4KAP1Q8N8J0 262 aa16.27■□□□□ 0.2
SKA1-205ENST00000494518 ZNF646O15015 1829 aaPredicted RBP16.26■□□□□ 0.19
SKA1-205ENST00000494518 XDHP47989 1333 aa16.26■□□□□ 0.19
SKA1-205ENST00000494518 RSBN1LQ6PCB5 846 aaPredicted RBP16.26■□□□□ 0.19
SKA1-205ENST00000494518 KSR2Q6VAB6 950 aa16.26■□□□□ 0.19
SKA1-205ENST00000494518 SPINK5Q9NQ38 1064 aaPredicted RBP16.26■□□□□ 0.19
SKA1-205ENST00000494518 SCAF8Q9UPN6 1271 aaKnown RBP16.26■□□□□ 0.19
SKA1-205ENST00000494518 SULF1Q8IWU6 871 aa16.25■□□□□ 0.19
SKA1-205ENST00000494518 C2orf69Q8N8R5 385 aa16.25■□□□□ 0.19
SKA1-205ENST00000494518 STK31Q9BXU1 1019 aa16.25■□□□□ 0.19
SKA1-205ENST00000494518 GREM2Q9H772 168 aa16.25■□□□□ 0.19
SKA1-205ENST00000494518 CACNA1FO60840 1977 aa16.24■□□□□ 0.19
SKA1-205ENST00000494518 NOGQ13253 232 aa16.24■□□□□ 0.19
SKA1-205ENST00000494518 SCARF1Q14162 830 aa16.24■□□□□ 0.19
SKA1-205ENST00000494518 ANGEL2Q5VTE6 544 aaKnown RBP16.24■□□□□ 0.19
SKA1-205ENST00000494518 RGMBQ6NW40 437 aa16.24■□□□□ 0.19
SKA1-205ENST00000494518 FBXW7Q969H0 707 aa16.24■□□□□ 0.19
SKA1-205ENST00000494518 CDCA5Q96FF9 252 aa16.24■□□□□ 0.19
SKA1-205ENST00000494518 MXD3Q9BW11 206 aa16.24■□□□□ 0.19
SKA1-205ENST00000494518 FAM155AB1AL88 458 aaPredicted RBP16.23■□□□□ 0.19
SKA1-205ENST00000494518 CA12O43570 354 aa16.23■□□□□ 0.19
SKA1-205ENST00000494518 ATP2B4P23634 1241 aa16.23■□□□□ 0.19
SKA1-205ENST00000494518 ZNF157P51786 506 aaPredicted RBP16.23■□□□□ 0.19
SKA1-205ENST00000494518 NEXNQ0ZGT2 675 aa16.23■□□□□ 0.19
SKA1-205ENST00000494518 TWISTNBQ3B726 338 aaPredicted RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms