RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 HSP90B1P14625 803 aaKnown RBP12.45□□□□□ -0.42
UBR4-216ENST00000494503 RPS8P62241 208 aaKnown RBP12.45□□□□□ -0.42
UBR4-216ENST00000494503 SF3B3Q15393 1217 aaKnown RBP12.45□□□□□ -0.42
UBR4-216ENST00000494503 JARID2Q92833 1246 aaPredicted RBP12.45□□□□□ -0.42
UBR4-216ENST00000494503 PHAXQ9H814 394 aaKnown RBP12.45□□□□□ -0.42
UBR4-216ENST00000494503 COL4A1P02462 1669 aa12.45□□□□□ -0.42
UBR4-216ENST00000494503 SPEF2Q9C093 1822 aa12.44□□□□□ -0.42
UBR4-216ENST00000494503 CA12O43570 354 aa12.44□□□□□ -0.42
UBR4-216ENST00000494503 CALD1Q05682 793 aaKnown RBP12.44□□□□□ -0.42
UBR4-216ENST00000494503 NOGQ13253 232 aa12.44□□□□□ -0.42
UBR4-216ENST00000494503 KIF4BQ2VIQ3 1234 aa12.44□□□□□ -0.42
UBR4-216ENST00000494503 CCDC152Q4G0S7 254 aa12.44□□□□□ -0.42
UBR4-216ENST00000494503 SULF1Q8IWU6 871 aa12.44□□□□□ -0.42
UBR4-216ENST00000494503 C2orf69Q8N8R5 385 aa12.44□□□□□ -0.42
UBR4-216ENST00000494503 ZBTB38Q8NAP3 1195 aaPredicted RBP12.44□□□□□ -0.42
UBR4-216ENST00000494503 TBC1D16Q8TBP0 767 aa12.44□□□□□ -0.42
UBR4-216ENST00000494503 DPF2Q92785 391 aa12.44□□□□□ -0.42
UBR4-216ENST00000494503 GBA2Q9HCG7 927 aaPredicted RBP12.44□□□□□ -0.42
UBR4-216ENST00000494503 SEC31BQ9NQW1 1179 aa12.44□□□□□ -0.42
UBR4-216ENST00000494503 KCNQ5Q9NR82 932 aa12.44□□□□□ -0.42
UBR4-216ENST00000494503 GGA1Q9UJY5 639 aa12.44□□□□□ -0.42
UBR4-216ENST00000494503 SCN9AQ15858 1988 aa12.43□□□□□ -0.42
UBR4-216ENST00000494503 APAF1O14727 1248 aa12.43□□□□□ -0.42
UBR4-216ENST00000494503 DDX58O95786 925 aaKnown RBP12.43□□□□□ -0.42
UBR4-216ENST00000494503 EGFRP00533 1210 aa12.43□□□□□ -0.42
UBR4-216ENST00000494503 RPS12P25398 132 aaKnown RBP12.43□□□□□ -0.42
UBR4-216ENST00000494503 BRPF1P55201 1214 aaPredicted RBP12.43□□□□□ -0.42
UBR4-216ENST00000494503 GNAI1P63096 354 aa12.43□□□□□ -0.42
UBR4-216ENST00000494503 FBXW7Q969H0 707 aa12.43□□□□□ -0.42
UBR4-216ENST00000494503 GGA3Q9NZ52 723 aa12.43□□□□□ -0.42
UBR4-216ENST00000494503 PGAP2Q9UHJ9 254 aa12.43□□□□□ -0.42
UBR4-216ENST00000494503 RTL9Q8NET4 1388 aa12.43□□□□□ -0.42
UBR4-216ENST00000494503 AKAP11Q9UKA4 1901 aa12.43□□□□□ -0.42
UBR4-216ENST00000494503 ZNF157P51786 506 aaPredicted RBP12.42□□□□□ -0.42
UBR4-216ENST00000494503 DGKZQ13574 1117 aa12.42□□□□□ -0.42
UBR4-216ENST00000494503 ANKRD18AQ8IVF6 992 aa12.42□□□□□ -0.42
UBR4-216ENST00000494503 HHIPL1Q96JK4 782 aa12.42□□□□□ -0.42
UBR4-216ENST00000494503 IFT57Q9NWB7 429 aa12.42□□□□□ -0.42
UBR4-216ENST00000494503 CWC25Q9NXE8 425 aaPredicted RBP12.42□□□□□ -0.42
UBR4-216ENST00000494503 RGMBQ6NW40 437 aa12.41□□□□□ -0.42
UBR4-216ENST00000494503 ZIC5Q96T25 663 aa12.41□□□□□ -0.42
UBR4-216ENST00000494503 MCOLN1Q9GZU1 580 aa12.41□□□□□ -0.42
UBR4-216ENST00000494503 MYH3P11055 1940 aa12.41□□□□□ -0.42
UBR4-216ENST00000494503 PDE8AO60658 829 aa12.4□□□□□ -0.42
UBR4-216ENST00000494503 MLLT1Q03111 559 aaPredicted RBP12.4□□□□□ -0.42
UBR4-216ENST00000494503 CCDC30Q5VVM6 783 aa12.4□□□□□ -0.42
UBR4-216ENST00000494503 CCDC191Q8NCU4 936 aa12.4□□□□□ -0.42
UBR4-216ENST00000494503 MAP3K2Q9Y2U5 619 aa12.4□□□□□ -0.42
UBR4-216ENST00000494503 ASTN2O75129 1339 aaPredicted RBP12.39□□□□□ -0.43
UBR4-216ENST00000494503 XDHP47989 1333 aa12.39□□□□□ -0.43
UBR4-216ENST00000494503 PCCAP05165 728 aaPredicted RBP12.39□□□□□ -0.43
UBR4-216ENST00000494503 NEXNQ0ZGT2 675 aa12.39□□□□□ -0.43
UBR4-216ENST00000494503 TRIM28Q13263 835 aaKnown RBP12.39□□□□□ -0.43
UBR4-216ENST00000494503 TTLL12Q14166 644 aaPredicted RBP12.39□□□□□ -0.43
UBR4-216ENST00000494503 ANGEL2Q5VTE6 544 aaKnown RBP12.39□□□□□ -0.43
UBR4-216ENST00000494503 C8orf58Q8NAV2 365 aa12.39□□□□□ -0.43
UBR4-216ENST00000494503 CCDC102AQ96A19 550 aa12.39□□□□□ -0.43
UBR4-216ENST00000494503 CDC5LQ99459 802 aaKnown RBP12.39□□□□□ -0.43
UBR4-216ENST00000494503 STK31Q9BXU1 1019 aa12.39□□□□□ -0.43
UBR4-216ENST00000494503 PRKRIP1Q9H875 184 aaPredicted RBP12.39□□□□□ -0.43
UBR4-216ENST00000494503 VIL1P09327 827 aaKnown RBP12.38□□□□□ -0.43
UBR4-216ENST00000494503 KIF23Q02241 960 aaPredicted RBP12.38□□□□□ -0.43
UBR4-216ENST00000494503 SCARF1Q14162 830 aa12.38□□□□□ -0.43
UBR4-216ENST00000494503 RSBN1LQ6PCB5 846 aaPredicted RBP12.38□□□□□ -0.43
UBR4-216ENST00000494503 CDCA5Q96FF9 252 aa12.38□□□□□ -0.43
UBR4-216ENST00000494503 METTL22Q9BUU2 404 aaPredicted RBP12.38□□□□□ -0.43
UBR4-216ENST00000494503 CHMP4AQ9BY43 222 aa12.38□□□□□ -0.43
UBR4-216ENST00000494503 PODXL2Q9NZ53 605 aa12.38□□□□□ -0.43
UBR4-216ENST00000494503 SCAF8Q9UPN6 1271 aaKnown RBP12.38□□□□□ -0.43
UBR4-216ENST00000494503 PSME4Q14997 1843 aa12.37□□□□□ -0.43
UBR4-216ENST00000494503 TRPA1O75762 1119 aa12.37□□□□□ -0.43
UBR4-216ENST00000494503 USP17L8P0C7I0 530 aa12.37□□□□□ -0.43
UBR4-216ENST00000494503 ZNF853P0CG23 659 aa12.37□□□□□ -0.43
UBR4-216ENST00000494503 ATP2B4P23634 1241 aa12.37□□□□□ -0.43
UBR4-216ENST00000494503 CTSWP56202 376 aa12.37□□□□□ -0.43
UBR4-216ENST00000494503 TSR2Q969E8 191 aaKnown RBP12.37□□□□□ -0.43
UBR4-216ENST00000494503 PI4KAP2A4QPH2 592 aa12.36□□□□□ -0.43
UBR4-216ENST00000494503 USP17L3A6NCW0 530 aa12.36□□□□□ -0.43
UBR4-216ENST00000494503 USP17L4A6NCW7 530 aa12.36□□□□□ -0.43
UBR4-216ENST00000494503 USP17L1Q7RTZ2 530 aa12.36□□□□□ -0.43
UBR4-216ENST00000494503 PI4KAP1Q8N8J0 262 aa12.36□□□□□ -0.43
UBR4-216ENST00000494503 AGBL3Q8NEM8 1001 aa12.36□□□□□ -0.43
UBR4-216ENST00000494503 MYOZ2Q9NPC6 264 aa12.36□□□□□ -0.43
UBR4-216ENST00000494503 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.36□□□□□ -0.43
UBR4-216ENST00000494503 FAM155AB1AL88 458 aaPredicted RBP12.35□□□□□ -0.43
UBR4-216ENST00000494503 IGHMBP2P38935 993 aaKnown RBP12.35□□□□□ -0.43
UBR4-216ENST00000494503 KCNJ4P48050 445 aa12.35□□□□□ -0.43
UBR4-216ENST00000494503 CWF19L2Q2TBE0 894 aaKnown RBP12.35□□□□□ -0.43
UBR4-216ENST00000494503 KSR2Q6VAB6 950 aa12.35□□□□□ -0.43
UBR4-216ENST00000494503 UBE3BQ7Z3V4 1068 aa12.35□□□□□ -0.43
UBR4-216ENST00000494503 OGFOD1Q8N543 542 aa12.35□□□□□ -0.43
UBR4-216ENST00000494503 TSPYL6Q8N831 410 aa12.35□□□□□ -0.43
UBR4-216ENST00000494503 GREM2Q9H772 168 aa12.35□□□□□ -0.43
UBR4-216ENST00000494503 SLC10A3P09131 477 aa12.34□□□□□ -0.43
UBR4-216ENST00000494503 MKRN3Q13064 507 aaKnown RBP12.34□□□□□ -0.43
UBR4-216ENST00000494503 PRAMEF18Q5VWM3 479 aa12.34□□□□□ -0.43
UBR4-216ENST00000494503 PODNQ7Z5L7 613 aa12.34□□□□□ -0.43
UBR4-216ENST00000494503 MXD3Q9BW11 206 aa12.34□□□□□ -0.43
UBR4-216ENST00000494503 RNF186Q9NXI6 227 aa12.34□□□□□ -0.43
UBR4-216ENST00000494503 PAPPA2Q9BXP8 1791 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms