RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 ME1P48163 572 aa13.61□□□□□ -0.23
HDAC4-210ENST00000493582 ICE2Q659A1 982 aa13.61□□□□□ -0.23
HDAC4-210ENST00000493582 UTP14AQ9BVJ6 771 aaKnown RBP13.61□□□□□ -0.23
HDAC4-210ENST00000493582 FUT8Q9BYC5 575 aa13.61□□□□□ -0.23
HDAC4-210ENST00000493582 ARFGAP3Q9NP61 516 aa13.61□□□□□ -0.23
HDAC4-210ENST00000493582 RCOR1Q9UKL0 485 aa13.61□□□□□ -0.23
HDAC4-210ENST00000493582 ADGRL3Q9HAR2 1447 aa13.61□□□□□ -0.23
HDAC4-210ENST00000493582 MAP3K5Q99683 1374 aa13.61□□□□□ -0.23
HDAC4-210ENST00000493582 FAM160A1Q05DH4 1040 aa13.61□□□□□ -0.23
HDAC4-210ENST00000493582 PLPPR3Q6T4P5 718 aa13.61□□□□□ -0.23
HDAC4-210ENST00000493582 PARD6BQ9BYG5 372 aa13.61□□□□□ -0.23
HDAC4-210ENST00000493582 CPS1P31327 1500 aa13.61□□□□□ -0.23
HDAC4-210ENST00000493582 NRDCO43847 1150 aa13.61□□□□□ -0.23
HDAC4-210ENST00000493582 FOXR1Q6PIV2 292 aa13.61□□□□□ -0.23
HDAC4-210ENST00000493582 ZSCAN16Q9H4T2 348 aaPredicted RBP13.61□□□□□ -0.23
HDAC4-210ENST00000493582 A0A0D9SFI3 127 aa13.6□□□□□ -0.23
HDAC4-210ENST00000493582 ACTN2P35609 894 aa13.6□□□□□ -0.23
HDAC4-210ENST00000493582 EXOC4Q96A65 974 aa13.6□□□□□ -0.23
HDAC4-210ENST00000493582 EVI5LQ96CN4 794 aa13.6□□□□□ -0.23
HDAC4-210ENST00000493582 SIL1Q9H173 461 aa13.6□□□□□ -0.23
HDAC4-210ENST00000493582 A0A1B0GVL5 298 aa13.6□□□□□ -0.23
HDAC4-210ENST00000493582 HSP90B1P14625 803 aaKnown RBP13.6□□□□□ -0.23
HDAC4-210ENST00000493582 LMOD1P29536 600 aaPredicted RBP13.6□□□□□ -0.23
HDAC4-210ENST00000493582 ISM2Q6H9L7 571 aa13.6□□□□□ -0.23
HDAC4-210ENST00000493582 SRRTQ9BXP5 876 aaKnown RBP13.6□□□□□ -0.23
HDAC4-210ENST00000493582 LRRC2Q9BYS8 371 aa13.6□□□□□ -0.23
HDAC4-210ENST00000493582 PA2G4Q9UQ80 394 aaKnown RBP13.6□□□□□ -0.23
HDAC4-210ENST00000493582 MAP3K19Q56UN5 1328 aa13.59□□□□□ -0.23
HDAC4-210ENST00000493582 ANKRD65E5RJM6 399 aa13.59□□□□□ -0.23
HDAC4-210ENST00000493582 TUBB4AP04350 444 aa13.59□□□□□ -0.23
HDAC4-210ENST00000493582 TPM1P09493 284 aa13.59□□□□□ -0.23
HDAC4-210ENST00000493582 NUDT16Q96DE0 195 aaKnown RBP13.59□□□□□ -0.23
HDAC4-210ENST00000493582 YY1AP1Q9H869 796 aa13.59□□□□□ -0.23
HDAC4-210ENST00000493582 WASLO00401 505 aaPredicted RBP13.59□□□□□ -0.23
HDAC4-210ENST00000493582 GUCY1B3Q02153 619 aa13.59□□□□□ -0.23
HDAC4-210ENST00000493582 ZRSR1Q15695 479 aaKnown RBP13.59□□□□□ -0.23
HDAC4-210ENST00000493582 PACS2Q86VP3 889 aa13.59□□□□□ -0.23
HDAC4-210ENST00000493582 GPR161Q8N6U8 529 aaKnown RBP13.59□□□□□ -0.23
HDAC4-210ENST00000493582 USP42Q9H9J4 1324 aaKnown RBP13.59□□□□□ -0.23
HDAC4-210ENST00000493582 ATP1A3P13637 1013 aa13.59□□□□□ -0.23
HDAC4-210ENST00000493582 KCNJ6P48051 423 aa13.59□□□□□ -0.23
HDAC4-210ENST00000493582 TEX2Q8IWB9 1127 aa13.59□□□□□ -0.23
HDAC4-210ENST00000493582 WDR24Q96S15 920 aa13.59□□□□□ -0.23
HDAC4-210ENST00000493582 GEMIN8Q9NWZ8 242 aaKnown RBP13.59□□□□□ -0.23
HDAC4-210ENST00000493582 TAF7Q15545 349 aaPredicted RBP13.58□□□□□ -0.24
HDAC4-210ENST00000493582 ZSWIM4Q9H7M6 989 aa13.58□□□□□ -0.24
HDAC4-210ENST00000493582 SLC52A1Q9NWF4 448 aa13.58□□□□□ -0.24
HDAC4-210ENST00000493582 VPS18Q9P253 973 aa13.58□□□□□ -0.24
HDAC4-210ENST00000493582 ZNF589Q86UQ0 364 aaPredicted RBP13.58□□□□□ -0.24
HDAC4-210ENST00000493582 AACSQ86V21 672 aa13.58□□□□□ -0.24
HDAC4-210ENST00000493582 SECISBP2LQ93073 1101 aaKnown RBP13.58□□□□□ -0.24
HDAC4-210ENST00000493582 JRKLQ9Y4A0 524 aa13.58□□□□□ -0.24
HDAC4-210ENST00000493582 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.58□□□□□ -0.24
HDAC4-210ENST00000493582 MCM6Q14566 821 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 LONRF2Q1L5Z9 754 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 Q6ZUG5 572 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 DRC1Q96MC2 740 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 EIF2S2P20042 333 aaKnown RBP13.57□□□□□ -0.24
HDAC4-210ENST00000493582 GNG11P61952 73 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 PPP2R3AQ06190 1150 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 SCRN1Q12765 414 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 HSP90AB4PQ58FF6 505 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 CTR9Q6PD62 1173 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 KIAA1468Q9P260 1216 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 NPHP4O75161 1426 aaPredicted RBP13.57□□□□□ -0.24
HDAC4-210ENST00000493582 VWA3AA6NCI4 1184 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 NDUFA8P51970 172 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 FANCCQ00597 558 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 HDGFL1Q5TGJ6 251 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 LEKR1Q6ZMV7 388 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 FMR1NBQ8N0W7 255 aaPredicted RBP13.57□□□□□ -0.24
HDAC4-210ENST00000493582 GOLGA6L1Q8N7Z2 621 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 SEC62Q99442 399 aaKnown RBP13.57□□□□□ -0.24
HDAC4-210ENST00000493582 CCDC8Q9H0W5 538 aaPredicted RBP13.57□□□□□ -0.24
HDAC4-210ENST00000493582 BOLA2Q9H3K6 86 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 PSD3Q9NYI0 1048 aa13.57□□□□□ -0.24
HDAC4-210ENST00000493582 PLEKHG2Q9H7P9 1386 aa13.56□□□□□ -0.24
HDAC4-210ENST00000493582 MAP3K9P80192 1104 aa13.56□□□□□ -0.24
HDAC4-210ENST00000493582 DPF2Q92785 391 aa13.56□□□□□ -0.24
HDAC4-210ENST00000493582 SIRT1Q96EB6 747 aa13.56□□□□□ -0.24
HDAC4-210ENST00000493582 PDE11AQ9HCR9 933 aa13.56□□□□□ -0.24
HDAC4-210ENST00000493582 PCDHA7Q9UN72 937 aa13.56□□□□□ -0.24
HDAC4-210ENST00000493582 CCDC61Q9Y6R9 512 aa13.56□□□□□ -0.24
HDAC4-210ENST00000493582 A0A1B0GUL7 405 aa13.56□□□□□ -0.24
HDAC4-210ENST00000493582 NCAPHQ15003 741 aa13.56□□□□□ -0.24
HDAC4-210ENST00000493582 GPATCH3Q96I76 525 aa13.56□□□□□ -0.24
HDAC4-210ENST00000493582 FSD1Q9BTV5 496 aa13.56□□□□□ -0.24
HDAC4-210ENST00000493582 ALDH8A1Q9H2A2 487 aaPredicted RBP13.56□□□□□ -0.24
HDAC4-210ENST00000493582 MLH3Q9UHC1 1453 aa13.56□□□□□ -0.24
HDAC4-210ENST00000493582 CCP110O43303 1012 aa13.55□□□□□ -0.24
HDAC4-210ENST00000493582 N4BP1O75113 896 aaKnown RBP13.55□□□□□ -0.24
HDAC4-210ENST00000493582 TTC31Q49AM3 519 aaPredicted RBP13.55□□□□□ -0.24
HDAC4-210ENST00000493582 NBPF6Q5VWK0 638 aa13.55□□□□□ -0.24
HDAC4-210ENST00000493582 RSRC2Q7L4I2 434 aaKnown RBP13.55□□□□□ -0.24
HDAC4-210ENST00000493582 NBPF4Q96M43 638 aa13.55□□□□□ -0.24
HDAC4-210ENST00000493582 XRN1Q8IZH2 1706 aaKnown RBP13.55□□□□□ -0.24
HDAC4-210ENST00000493582 SETD1AO15047 1707 aaKnown RBP13.55□□□□□ -0.24
HDAC4-210ENST00000493582 PI4KAP2A4QPH2 592 aa13.55□□□□□ -0.24
HDAC4-210ENST00000493582 SART3Q15020 963 aaKnown RBP13.55□□□□□ -0.24
HDAC4-210ENST00000493582 PI4KAP1Q8N8J0 262 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms