RNA–Protein interactions for RNA: ENST00000492858.6

GPNMB-214, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 721 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-214ENST00000492858 AIMP1Q12904 312 aaKnown RBP15.89■□□□□ 0.13
GPNMB-214ENST00000492858 CELF1Q92879 486 aaKnown RBP15.89■□□□□ 0.13
GPNMB-214ENST00000492858 EYA3Q99504 573 aa15.89■□□□□ 0.13
GPNMB-214ENST00000492858 GPR25O00155 361 aa15.88■□□□□ 0.13
GPNMB-214ENST00000492858 VIL1P09327 827 aaKnown RBP15.88■□□□□ 0.13
GPNMB-214ENST00000492858 TCIRG1Q13488 830 aa15.88■□□□□ 0.13
GPNMB-214ENST00000492858 SCARF1Q14162 830 aa15.88■□□□□ 0.13
GPNMB-214ENST00000492858 MOB2Q70IA6 237 aa15.88■□□□□ 0.13
GPNMB-214ENST00000492858 COPS6Q7L5N1 327 aa15.88■□□□□ 0.13
GPNMB-214ENST00000492858 TSPYL4Q9UJ04 414 aa15.88■□□□□ 0.13
GPNMB-214ENST00000492858 TAF1P21675 1872 aa15.88■□□□□ 0.13
GPNMB-214ENST00000492858 UBE2Q2LH0YL09 131 aa15.87■□□□□ 0.13
GPNMB-214ENST00000492858 XAGE3Q8WTP9 111 aa15.87■□□□□ 0.13
GPNMB-214ENST00000492858 NECTIN2Q92692 538 aa15.87■□□□□ 0.13
GPNMB-214ENST00000492858 PAPPA2Q9BXP8 1791 aa15.87■□□□□ 0.13
GPNMB-214ENST00000492858 ZNF280AP59817 542 aaPredicted RBP15.86■□□□□ 0.13
GPNMB-214ENST00000492858 NFE2L2Q16236 605 aa15.86■□□□□ 0.13
GPNMB-214ENST00000492858 NOM1Q5C9Z4 860 aaKnown RBP15.86■□□□□ 0.13
GPNMB-214ENST00000492858 TBC1D16Q8TBP0 767 aa15.86■□□□□ 0.13
GPNMB-214ENST00000492858 ZC3H12CQ9C0D7 883 aaKnown RBP15.86■□□□□ 0.13
GPNMB-214ENST00000492858 G3V3G9 751 aa15.85■□□□□ 0.13
GPNMB-214ENST00000492858 MKRN3Q13064 507 aaKnown RBP15.85■□□□□ 0.13
GPNMB-214ENST00000492858 DCAF8Q5TAQ9 597 aa15.85■□□□□ 0.13
GPNMB-214ENST00000492858 SCAF8Q9UPN6 1271 aaKnown RBP15.85■□□□□ 0.13
GPNMB-214ENST00000492858 FKTNO75072 461 aa15.84■□□□□ 0.13
GPNMB-214ENST00000492858 TM4SF4P48230 202 aa15.84■□□□□ 0.13
GPNMB-214ENST00000492858 TTLL12Q14166 644 aaPredicted RBP15.84■□□□□ 0.13
GPNMB-214ENST00000492858 SF3B3Q15393 1217 aaKnown RBP15.84■□□□□ 0.13
GPNMB-214ENST00000492858 PRAMEF18Q5VWM3 479 aa15.84■□□□□ 0.13
GPNMB-214ENST00000492858 RSBN1LQ6PCB5 846 aaPredicted RBP15.84■□□□□ 0.13
GPNMB-214ENST00000492858 FAM89AQ96GI7 184 aa15.84■□□□□ 0.13
GPNMB-214ENST00000492858 PITPNM2Q9BZ72 1349 aa15.84■□□□□ 0.13
GPNMB-214ENST00000492858 COL4A1P02462 1669 aa15.83■□□□□ 0.13
GPNMB-214ENST00000492858 DDX60Q8IY21 1712 aaKnown RBP15.83■□□□□ 0.13
GPNMB-214ENST00000492858 UFL1O94874 794 aa15.83■□□□□ 0.12
GPNMB-214ENST00000492858 AGBL3Q8NEM8 1001 aa15.83■□□□□ 0.12
GPNMB-214ENST00000492858 PLEKHF1Q96S99 279 aa15.83■□□□□ 0.12
GPNMB-214ENST00000492858 R3HDMLQ9H3Y0 253 aa15.83■□□□□ 0.12
GPNMB-214ENST00000492858 MYOZ2Q9NPC6 264 aa15.83■□□□□ 0.12
GPNMB-214ENST00000492858 DLG5Q8TDM6 1919 aa15.83■□□□□ 0.12
GPNMB-214ENST00000492858 SCN9AQ15858 1988 aa15.82■□□□□ 0.12
GPNMB-214ENST00000492858 POTEFA5A3E0 1075 aa15.82■□□□□ 0.12
GPNMB-214ENST00000492858 SREBF2Q12772 1141 aa15.82■□□□□ 0.12
GPNMB-214ENST00000492858 ZNF609O15014 1411 aa15.82■□□□□ 0.12
GPNMB-214ENST00000492858 USP17L8P0C7I0 530 aa15.81■□□□□ 0.12
GPNMB-214ENST00000492858 RPS8P62241 208 aaKnown RBP15.81■□□□□ 0.12
GPNMB-214ENST00000492858 RTL5Q5HYW3 569 aaPredicted RBP15.81■□□□□ 0.12
GPNMB-214ENST00000492858 ANKIB1Q9P2G1 1089 aa15.81■□□□□ 0.12
GPNMB-214ENST00000492858 GGA1Q9UJY5 639 aa15.81■□□□□ 0.12
GPNMB-214ENST00000492858 MAPK8IP3Q9UPT6 1336 aa15.8■□□□□ 0.12
GPNMB-214ENST00000492858 ATP5J2-PTCD1G3V325 749 aa15.8■□□□□ 0.12
GPNMB-214ENST00000492858 FXR1P51114 621 aaKnown RBP eCLIP15.8■□□□□ 0.12
GPNMB-214ENST00000492858 CCER1Q8TC90 406 aaPredicted RBP15.8■□□□□ 0.12
GPNMB-214ENST00000492858 GMLQ99445 158 aa15.8■□□□□ 0.12
GPNMB-214ENST00000492858 CFHR5Q9BXR6 569 aa15.8■□□□□ 0.12
GPNMB-214ENST00000492858 PODXL2Q9NZ53 605 aa15.8■□□□□ 0.12
GPNMB-214ENST00000492858 ISCA1Q9BUE6 129 aa15.79■□□□□ 0.12
GPNMB-214ENST00000492858 TRIM17Q9Y577 477 aa15.79■□□□□ 0.12
GPNMB-214ENST00000492858 SZT2Q5T011 3432 aa15.79■□□□□ 0.12
GPNMB-214ENST00000492858 IRS4O14654 1257 aaPredicted RBP15.78■□□□□ 0.12
GPNMB-214ENST00000492858 NF2P35240 595 aa15.78■□□□□ 0.12
GPNMB-214ENST00000492858 NBPF9Q3BBW0 867 aa15.78■□□□□ 0.12
GPNMB-214ENST00000492858 INTS3Q68E01 1043 aaKnown RBP15.78■□□□□ 0.12
GPNMB-214ENST00000492858 PLBD2Q8NHP8 589 aa15.78■□□□□ 0.12
GPNMB-214ENST00000492858 USP17L3A6NCW0 530 aa15.77■□□□□ 0.12
GPNMB-214ENST00000492858 USP17L4A6NCW7 530 aa15.77■□□□□ 0.12
GPNMB-214ENST00000492858 PTPN12Q05209 780 aaKnown RBP15.77■□□□□ 0.12
GPNMB-214ENST00000492858 OTOP1Q7RTM1 612 aa15.77■□□□□ 0.12
GPNMB-214ENST00000492858 USP17L1Q7RTZ2 530 aa15.77■□□□□ 0.12
GPNMB-214ENST00000492858 SEC31BQ9NQW1 1179 aa15.77■□□□□ 0.12
GPNMB-214ENST00000492858 CHPF2Q9P2E5 772 aa15.77■□□□□ 0.12
GPNMB-214ENST00000492858 ALDH1A1P00352 501 aa15.76■□□□□ 0.11
GPNMB-214ENST00000492858 PRKG1Q13976 671 aa15.76■□□□□ 0.11
GPNMB-214ENST00000492858 ANKRD13DQ6ZTN6 518 aa15.76■□□□□ 0.11
GPNMB-214ENST00000492858 BABAM1Q9NWV8 329 aa15.76■□□□□ 0.11
GPNMB-214ENST00000492858 KRT24Q2M2I5 525 aa15.75■□□□□ 0.11
GPNMB-214ENST00000492858 SPRYD7Q5W111 196 aa15.75■□□□□ 0.11
GPNMB-214ENST00000492858 ARMC9Q7Z3E5 817 aa15.75■□□□□ 0.11
GPNMB-214ENST00000492858 PNNQ9H307 717 aaKnown RBP15.75■□□□□ 0.11
GPNMB-214ENST00000492858 WNT10BO00744 389 aa15.74■□□□□ 0.11
GPNMB-214ENST00000492858 EN2P19622 333 aaPredicted RBP15.74■□□□□ 0.11
GPNMB-214ENST00000492858 RIPK4P57078 832 aa15.74■□□□□ 0.11
GPNMB-214ENST00000492858 PODNQ7Z5L7 613 aa15.74■□□□□ 0.11
GPNMB-214ENST00000492858 OGFOD1Q8N543 542 aa15.73■□□□□ 0.11
GPNMB-214ENST00000492858 MXD3Q9BW11 206 aa15.73■□□□□ 0.11
GPNMB-214ENST00000492858 XDHP47989 1333 aa15.72■□□□□ 0.11
GPNMB-214ENST00000492858 MANSC4A6NHS7 340 aaPredicted RBP15.72■□□□□ 0.11
GPNMB-214ENST00000492858 SASH1O94885 1247 aa15.72■□□□□ 0.11
GPNMB-214ENST00000492858 TRIM28Q13263 835 aaKnown RBP15.72■□□□□ 0.11
GPNMB-214ENST00000492858 LDLRAD1Q5T700 205 aa15.72■□□□□ 0.11
GPNMB-214ENST00000492858 HDGFL1Q5TGJ6 251 aa15.72■□□□□ 0.11
GPNMB-214ENST00000492858 IFNL1Q8IU54 200 aa15.72■□□□□ 0.11
GPNMB-214ENST00000492858 FBXW7Q969H0 707 aa15.72■□□□□ 0.11
GPNMB-214ENST00000492858 CCDC85AQ96PX6 553 aaPredicted RBP15.72■□□□□ 0.11
GPNMB-214ENST00000492858 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.72■□□□□ 0.11
GPNMB-214ENST00000492858 ANGEL1Q9UNK9 670 aaKnown RBP15.72■□□□□ 0.11
GPNMB-214ENST00000492858 COLQQ9Y215 455 aaPredicted RBP15.72■□□□□ 0.11
GPNMB-214ENST00000492858 A0A0C4DFX4 3053 aa15.71■□□□□ 0.11
GPNMB-214ENST00000492858 ATP2B4P23634 1241 aa15.71■□□□□ 0.11
GPNMB-214ENST00000492858 INHBEP58166 350 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms