RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 KRT24Q2M2I5 525 aa17.14■□□□□ 0.33
HDAC3-213ENST00000492506 C2orf69Q8N8R5 385 aa17.14■□□□□ 0.33
HDAC3-213ENST00000492506 ISCA1Q9BUE6 129 aa17.14■□□□□ 0.33
HDAC3-213ENST00000492506 ECE2O60344 883 aa17.13■□□□□ 0.33
HDAC3-213ENST00000492506 TRPA1O75762 1119 aa17.13■□□□□ 0.33
HDAC3-213ENST00000492506 ZNF157P51786 506 aaPredicted RBP17.13■□□□□ 0.33
HDAC3-213ENST00000492506 DOK7Q18PE1 504 aa17.13■□□□□ 0.33
HDAC3-213ENST00000492506 RBM26Q5T8P6 1007 aaKnown RBP17.13■□□□□ 0.33
HDAC3-213ENST00000492506 DCPSQ96C86 337 aaKnown RBP17.13■□□□□ 0.33
HDAC3-213ENST00000492506 FAM89AQ96GI7 184 aa17.13■□□□□ 0.33
HDAC3-213ENST00000492506 CSRNP1Q96S65 589 aa17.13■□□□□ 0.33
HDAC3-213ENST00000492506 ASTN2O75129 1339 aaPredicted RBP17.13■□□□□ 0.33
HDAC3-213ENST00000492506 C6orf229H3BNL8 230 aa17.12■□□□□ 0.33
HDAC3-213ENST00000492506 SLC10A3P09131 477 aa17.12■□□□□ 0.33
HDAC3-213ENST00000492506 TMPOP42166 694 aaKnown RBP17.12■□□□□ 0.33
HDAC3-213ENST00000492506 SOX10P56693 466 aa17.12■□□□□ 0.33
HDAC3-213ENST00000492506 TBC1D16Q8TBP0 767 aa17.12■□□□□ 0.33
HDAC3-213ENST00000492506 CHPF2Q9P2E5 772 aa17.12■□□□□ 0.33
HDAC3-213ENST00000492506 VIL1P09327 827 aaKnown RBP17.11■□□□□ 0.33
HDAC3-213ENST00000492506 PLBD2Q8NHP8 589 aa17.11■□□□□ 0.33
HDAC3-213ENST00000492506 CHL1O00533 1208 aa17.1■□□□□ 0.33
HDAC3-213ENST00000492506 KIF4BQ2VIQ3 1234 aa17.1■□□□□ 0.33
HDAC3-213ENST00000492506 CDCA5Q96FF9 252 aa17.1■□□□□ 0.33
HDAC3-213ENST00000492506 GGA3Q9NZ52 723 aa17.1■□□□□ 0.33
HDAC3-213ENST00000492506 ZNF609O15014 1411 aa17.1■□□□□ 0.33
HDAC3-213ENST00000492506 PAPPA2Q9BXP8 1791 aa17.1■□□□□ 0.33
HDAC3-213ENST00000492506 ZNF646O15015 1829 aaPredicted RBP17.1■□□□□ 0.33
HDAC3-213ENST00000492506 ATP5J2-PTCD1G3V325 749 aa17.09■□□□□ 0.33
HDAC3-213ENST00000492506 ANKRD13DQ6ZTN6 518 aa17.09■□□□□ 0.33
HDAC3-213ENST00000492506 EYA3Q99504 573 aa17.09■□□□□ 0.33
HDAC3-213ENST00000492506 ZNF280AP59817 542 aaPredicted RBP17.08■□□□□ 0.32
HDAC3-213ENST00000492506 RPS8P62241 208 aaKnown RBP17.08■□□□□ 0.32
HDAC3-213ENST00000492506 RASAL3Q86YV0 1011 aa17.08■□□□□ 0.32
HDAC3-213ENST00000492506 SULF1Q8IWU6 871 aa17.08■□□□□ 0.32
HDAC3-213ENST00000492506 PODXL2Q9NZ53 605 aa17.08■□□□□ 0.32
HDAC3-213ENST00000492506 LMOD3Q0VAK6 560 aa17.07■□□□□ 0.32
HDAC3-213ENST00000492506 TRIM28Q13263 835 aaKnown RBP17.07■□□□□ 0.32
HDAC3-213ENST00000492506 RTL5Q5HYW3 569 aaPredicted RBP17.07■□□□□ 0.32
HDAC3-213ENST00000492506 CTU1Q7Z7A3 348 aaKnown RBP17.07■□□□□ 0.32
HDAC3-213ENST00000492506 IRS4O14654 1257 aaPredicted RBP17.06■□□□□ 0.32
HDAC3-213ENST00000492506 REM2Q8IYK8 340 aaPredicted RBP17.06■□□□□ 0.32
HDAC3-213ENST00000492506 ZC3H12CQ9C0D7 883 aaKnown RBP17.06■□□□□ 0.32
HDAC3-213ENST00000492506 SEC31BQ9NQW1 1179 aa17.06■□□□□ 0.32
HDAC3-213ENST00000492506 TRIM35Q9UPQ4 493 aa17.06■□□□□ 0.32
HDAC3-213ENST00000492506 HOXB7P09629 217 aa17.05■□□□□ 0.32
HDAC3-213ENST00000492506 SCARF1Q14162 830 aa17.05■□□□□ 0.32
HDAC3-213ENST00000492506 HDGFL1Q5TGJ6 251 aa17.05■□□□□ 0.32
HDAC3-213ENST00000492506 ANGEL2Q5VTE6 544 aaKnown RBP17.05■□□□□ 0.32
HDAC3-213ENST00000492506 GMLQ99445 158 aa17.05■□□□□ 0.32
HDAC3-213ENST00000492506 DBF4Q9UBU7 674 aaPredicted RBP17.05■□□□□ 0.32
HDAC3-213ENST00000492506 FKBP1BP68106 108 aa17.04■□□□□ 0.32
HDAC3-213ENST00000492506 RSBN1LQ6PCB5 846 aaPredicted RBP17.04■□□□□ 0.32
HDAC3-213ENST00000492506 AGBL3Q8NEM8 1001 aa17.04■□□□□ 0.32
HDAC3-213ENST00000492506 HPS5Q9UPZ3 1129 aa17.04■□□□□ 0.32
HDAC3-213ENST00000492506 UFL1O94874 794 aa17.03■□□□□ 0.32
HDAC3-213ENST00000492506 PRPF38BQ5VTL8 546 aaKnown RBP17.03■□□□□ 0.32
HDAC3-213ENST00000492506 ERICH6BQ5W0A0 696 aa17.03■□□□□ 0.32
HDAC3-213ENST00000492506 MOB2Q70IA6 237 aa17.03■□□□□ 0.32
HDAC3-213ENST00000492506 SPEF2Q9C093 1822 aa17.03■□□□□ 0.32
HDAC3-213ENST00000492506 PITPNM2Q9BZ72 1349 aa17.02■□□□□ 0.32
HDAC3-213ENST00000492506 NEUROD2Q15784 382 aa17.02■□□□□ 0.32
HDAC3-213ENST00000492506 ZBTB38Q8NAP3 1195 aaPredicted RBP17.02■□□□□ 0.32
HDAC3-213ENST00000492506 MYOZ2Q9NPC6 264 aa17.02■□□□□ 0.32
HDAC3-213ENST00000492506 HYPKQ9NX55 129 aa17.02■□□□□ 0.32
HDAC3-213ENST00000492506 GGA1Q9UJY5 639 aa17.02■□□□□ 0.32
HDAC3-213ENST00000492506 LAS1LQ9Y4W2 734 aaKnown RBP17.02■□□□□ 0.32
HDAC3-213ENST00000492506 HTTP42858 3142 aa17.02■□□□□ 0.31
HDAC3-213ENST00000492506 MYH3P11055 1940 aa17.02■□□□□ 0.31
HDAC3-213ENST00000492506 CCDC146Q8IYE0 955 aa17.01■□□□□ 0.31
HDAC3-213ENST00000492506 ANKIB1Q9P2G1 1089 aa17.01■□□□□ 0.31
HDAC3-213ENST00000492506 SCAF8Q9UPN6 1271 aaKnown RBP17.01■□□□□ 0.31
HDAC3-213ENST00000492506 MKI67P46013 3256 aaKnown RBP17.01■□□□□ 0.31
HDAC3-213ENST00000492506 USP17L8P0C7I0 530 aa17■□□□□ 0.31
HDAC3-213ENST00000492506 ZNF296Q8WUU4 475 aaPredicted RBP17■□□□□ 0.31
HDAC3-213ENST00000492506 WTIPA6NIX2 430 aaPredicted RBP16.99■□□□□ 0.31
HDAC3-213ENST00000492506 G3V3G9 751 aa16.99■□□□□ 0.31
HDAC3-213ENST00000492506 UBE2Q2LH0YL09 131 aa16.99■□□□□ 0.31
HDAC3-213ENST00000492506 TBC1D8O95759 1140 aa16.99■□□□□ 0.31
HDAC3-213ENST00000492506 PKN2Q16513 984 aaKnown RBP16.99■□□□□ 0.31
HDAC3-213ENST00000492506 DCAF8Q5TAQ9 597 aa16.99■□□□□ 0.31
HDAC3-213ENST00000492506 DUSP27Q5VZP5 1158 aa16.99■□□□□ 0.31
HDAC3-213ENST00000492506 CENPFP49454 3210 aa16.99■□□□□ 0.31
HDAC3-213ENST00000492506 TM4SF4P48230 202 aa16.98■□□□□ 0.31
HDAC3-213ENST00000492506 NBPF9Q3BBW0 867 aa16.98■□□□□ 0.31
HDAC3-213ENST00000492506 NOM1Q5C9Z4 860 aaKnown RBP16.98■□□□□ 0.31
HDAC3-213ENST00000492506 PRAMEF18Q5VWM3 479 aa16.98■□□□□ 0.31
HDAC3-213ENST00000492506 PHAXQ9H814 394 aaKnown RBP16.98■□□□□ 0.31
HDAC3-213ENST00000492506 XDHP47989 1333 aa16.97■□□□□ 0.31
HDAC3-213ENST00000492506 FANCIQ9NVI1 1328 aa16.97■□□□□ 0.31
HDAC3-213ENST00000492506 LAMB1P07942 1786 aa16.97■□□□□ 0.31
HDAC3-213ENST00000492506 USP17L3A6NCW0 530 aa16.97■□□□□ 0.31
HDAC3-213ENST00000492506 USP17L4A6NCW7 530 aa16.97■□□□□ 0.31
HDAC3-213ENST00000492506 PDE8AO60658 829 aa16.97■□□□□ 0.31
HDAC3-213ENST00000492506 PCCAP05165 728 aaPredicted RBP16.97■□□□□ 0.31
HDAC3-213ENST00000492506 RALBP1Q15311 655 aa16.97■□□□□ 0.31
HDAC3-213ENST00000492506 CCDC152Q4G0S7 254 aa16.97■□□□□ 0.31
HDAC3-213ENST00000492506 USP17L1Q7RTZ2 530 aa16.97■□□□□ 0.31
HDAC3-213ENST00000492506 RIC3Q7Z5B4 369 aa16.97■□□□□ 0.31
HDAC3-213ENST00000492506 PODNQ7Z5L7 613 aa16.97■□□□□ 0.31
HDAC3-213ENST00000492506 JARID2Q92833 1246 aaPredicted RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms