RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 CNNM1Q9NRU3 951 aa11.84□□□□□ -0.51
USP54-214ENST00000492357 ECHDC1Q9NTX5 307 aa11.84□□□□□ -0.51
USP54-214ENST00000492357 FPGT-TNNI3KV9GXZ4 949 aa11.84□□□□□ -0.51
USP54-214ENST00000492357 ANKRD31Q8N7Z5 1873 aa11.83□□□□□ -0.52
USP54-214ENST00000492357 FAM177BA6PVY3 158 aa11.83□□□□□ -0.52
USP54-214ENST00000492357 BBOX1O75936 387 aa11.83□□□□□ -0.52
USP54-214ENST00000492357 PDE8BO95263 885 aa11.83□□□□□ -0.52
USP54-214ENST00000492357 ALDH1B1P30837 517 aa11.83□□□□□ -0.52
USP54-214ENST00000492357 RGS3P49796 1198 aa11.83□□□□□ -0.52
USP54-214ENST00000492357 RPS8P62241 208 aaKnown RBP11.83□□□□□ -0.52
USP54-214ENST00000492357 GRAPQ13588 217 aa11.83□□□□□ -0.52
USP54-214ENST00000492357 SMIM5Q71RC9 77 aa11.83□□□□□ -0.52
USP54-214ENST00000492357 GRAPLQ8TC17 118 aaPredicted RBP11.83□□□□□ -0.52
USP54-214ENST00000492357 RPGRQ92834 1020 aaKnown RBP11.83□□□□□ -0.52
USP54-214ENST00000492357 RBM17Q96I25 401 aaKnown RBP11.83□□□□□ -0.52
USP54-214ENST00000492357 ZNF512BQ96KM6 892 aaPredicted RBP11.83□□□□□ -0.52
USP54-214ENST00000492357 MTFR1LQ9H019 292 aa11.83□□□□□ -0.52
USP54-214ENST00000492357 KIF13BQ9NQT8 1826 aa11.83□□□□□ -0.52
USP54-214ENST00000492357 LRRC37AA6NMS7 1700 aa11.83□□□□□ -0.52
USP54-214ENST00000492357 A0A1B0GUL6 1792 aa11.82□□□□□ -0.52
USP54-214ENST00000492357 NPR1P16066 1061 aa11.82□□□□□ -0.52
USP54-214ENST00000492357 TFCP2Q12800 502 aa11.82□□□□□ -0.52
USP54-214ENST00000492357 PUM3Q15397 648 aaKnown RBP11.82□□□□□ -0.52
USP54-214ENST00000492357 GRIPAP1Q4V328 841 aa11.82□□□□□ -0.52
USP54-214ENST00000492357 TTC22Q5TAA0 569 aa11.82□□□□□ -0.52
USP54-214ENST00000492357 VGLL2Q8N8G2 317 aa11.82□□□□□ -0.52
USP54-214ENST00000492357 EAF2Q96CJ1 260 aaPredicted RBP11.82□□□□□ -0.52
USP54-214ENST00000492357 SIL1Q9H173 461 aa11.82□□□□□ -0.52
USP54-214ENST00000492357 C10orf71Q711Q0 1435 aa11.82□□□□□ -0.52
USP54-214ENST00000492357 RFX7Q2KHR2 1363 aa11.81□□□□□ -0.52
USP54-214ENST00000492357 ATP5JP18859 108 aa11.81□□□□□ -0.52
USP54-214ENST00000492357 UBE4AQ14139 1066 aa11.81□□□□□ -0.52
USP54-214ENST00000492357 METTL24Q5JXM2 366 aa11.81□□□□□ -0.52
USP54-214ENST00000492357 STYK1Q6J9G0 422 aa11.81□□□□□ -0.52
USP54-214ENST00000492357 AACSQ86V21 672 aa11.81□□□□□ -0.52
USP54-214ENST00000492357 KLHDC4Q8TBB5 520 aa11.81□□□□□ -0.52
USP54-214ENST00000492357 LPIN2Q92539 896 aa11.81□□□□□ -0.52
USP54-214ENST00000492357 IL1RAPL2Q9NP60 686 aa11.81□□□□□ -0.52
USP54-214ENST00000492357 DLEC1Q9Y238 1755 aa11.81□□□□□ -0.52
USP54-214ENST00000492357 APBB1O00213 710 aa11.8□□□□□ -0.52
USP54-214ENST00000492357 SMARCA5O60264 1052 aaPredicted RBP11.8□□□□□ -0.52
USP54-214ENST00000492357 CAPN15O75808 1086 aa11.8□□□□□ -0.52
USP54-214ENST00000492357 FGFR2P21802 821 aa11.8□□□□□ -0.52
USP54-214ENST00000492357 POLD1P28340 1107 aa11.8□□□□□ -0.52
USP54-214ENST00000492357 ATP2B3Q16720 1220 aa11.8□□□□□ -0.52
USP54-214ENST00000492357 LRRC24Q50LG9 513 aa11.8□□□□□ -0.52
USP54-214ENST00000492357 CC2D2BQ6DHV5 1058 aa11.8□□□□□ -0.52
USP54-214ENST00000492357 TMED8Q6PL24 325 aaPredicted RBP11.8□□□□□ -0.52
USP54-214ENST00000492357 MASTLQ96GX5 879 aa11.8□□□□□ -0.52
USP54-214ENST00000492357 ZNF594Q96JF6 807 aaPredicted RBP11.8□□□□□ -0.52
USP54-214ENST00000492357 A0A1B0GUL7 405 aa11.79□□□□□ -0.52
USP54-214ENST00000492357 EPB41L2O43491 1005 aaKnown RBP11.79□□□□□ -0.52
USP54-214ENST00000492357 IFIT1P09914 478 aaKnown RBP11.79□□□□□ -0.52
USP54-214ENST00000492357 SRGNP10124 158 aa11.79□□□□□ -0.52
USP54-214ENST00000492357 SLC5A1P13866 664 aa11.79□□□□□ -0.52
USP54-214ENST00000492357 CCDC158Q5M9N0 1113 aa11.79□□□□□ -0.52
USP54-214ENST00000492357 CASC1Q6TDU7 716 aa11.79□□□□□ -0.52
USP54-214ENST00000492357 C15orf52Q6ZUT6 534 aaKnown RBP11.79□□□□□ -0.52
USP54-214ENST00000492357 PI4K2BQ8TCG2 481 aa11.79□□□□□ -0.52
USP54-214ENST00000492357 PUS3Q9BZE2 481 aaKnown RBP11.79□□□□□ -0.52
USP54-214ENST00000492357 SEC31BQ9NQW1 1179 aa11.79□□□□□ -0.52
USP54-214ENST00000492357 PODXL2Q9NZ53 605 aa11.79□□□□□ -0.52
USP54-214ENST00000492357 LEMD3Q9Y2U8 911 aa11.79□□□□□ -0.52
USP54-214ENST00000492357 H0YIN7 160 aa11.78□□□□□ -0.52
USP54-214ENST00000492357 HIP1O00291 1037 aa11.78□□□□□ -0.52
USP54-214ENST00000492357 UQCRFS1P1P0C7P4 283 aa11.78□□□□□ -0.52
USP54-214ENST00000492357 CHRNDQ07001 517 aa11.78□□□□□ -0.52
USP54-214ENST00000492357 LRRFIP1Q32MZ4 808 aaKnown RBP11.78□□□□□ -0.52
USP54-214ENST00000492357 C3orf67Q6ZVT6 689 aa11.78□□□□□ -0.52
USP54-214ENST00000492357 CNTROBQ8N137 903 aa11.78□□□□□ -0.52
USP54-214ENST00000492357 CNKSR1Q969H4 720 aa11.78□□□□□ -0.52
USP54-214ENST00000492357 DBNLQ9UJU6 430 aaKnown RBP11.78□□□□□ -0.52
USP54-214ENST00000492357 MINPP1Q9UNW1 487 aa11.78□□□□□ -0.52
USP54-214ENST00000492357 DUOX1Q9NRD9 1551 aa11.78□□□□□ -0.52
USP54-214ENST00000492357 XDHP47989 1333 aa11.78□□□□□ -0.52
USP54-214ENST00000492357 PDS5AQ29RF7 1337 aaKnown RBP11.78□□□□□ -0.52
USP54-214ENST00000492357 SEMA3EO15041 775 aa11.77□□□□□ -0.53
USP54-214ENST00000492357 CDC45O75419 566 aa11.77□□□□□ -0.53
USP54-214ENST00000492357 TGFB2P61812 414 aa11.77□□□□□ -0.53
USP54-214ENST00000492357 SP8Q8IXZ3 490 aa11.77□□□□□ -0.53
USP54-214ENST00000492357 C16orf71Q8IYS4 520 aaPredicted RBP11.77□□□□□ -0.53
USP54-214ENST00000492357 CELF1Q92879 486 aaKnown RBP11.77□□□□□ -0.53
USP54-214ENST00000492357 EVI5LQ96CN4 794 aa11.77□□□□□ -0.53
USP54-214ENST00000492357 CCDC85AQ96PX6 553 aaPredicted RBP11.77□□□□□ -0.53
USP54-214ENST00000492357 BACH2Q9BYV9 841 aa11.77□□□□□ -0.53
USP54-214ENST00000492357 TMX4Q9H1E5 349 aaPredicted RBP11.77□□□□□ -0.53
USP54-214ENST00000492357 COL11A2P13942 1736 aaPredicted RBP11.77□□□□□ -0.53
USP54-214ENST00000492357 AK9Q5TCS8 1911 aa11.76□□□□□ -0.53
USP54-214ENST00000492357 GORABQ5T7V8 394 aa11.76□□□□□ -0.53
USP54-214ENST00000492357 OTUD7AQ8TE49 926 aaPredicted RBP11.76□□□□□ -0.53
USP54-214ENST00000492357 GNL3LQ9NVN8 582 aaKnown RBP11.76□□□□□ -0.53
USP54-214ENST00000492357 ZNF219Q9P2Y4 722 aaPredicted RBP11.76□□□□□ -0.53
USP54-214ENST00000492357 LTBP1Q14766 1721 aa11.76□□□□□ -0.53
USP54-214ENST00000492357 GSPT1P15170 499 aaKnown RBP11.75□□□□□ -0.53
USP54-214ENST00000492357 ATP2B4P23634 1241 aa11.75□□□□□ -0.53
USP54-214ENST00000492357 ARID4AP29374 1257 aaPredicted RBP11.75□□□□□ -0.53
USP54-214ENST00000492357 TTF1Q15361 905 aaPredicted RBP11.75□□□□□ -0.53
USP54-214ENST00000492357 SOGA3Q5TF21 947 aa11.75□□□□□ -0.53
USP54-214ENST00000492357 IL27Q8NEV9 243 aa11.75□□□□□ -0.53
USP54-214ENST00000492357 XAGE2Q96GT9 111 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms