RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 FANCIQ9NVI1 1328 aa17.52■□□□□ 0.4
COL6A3-211ENST00000491233 ZNF316A6NFI3 1004 aaPredicted RBP17.52■□□□□ 0.4
COL6A3-211ENST00000491233 UFL1O94874 794 aa17.52■□□□□ 0.4
COL6A3-211ENST00000491233 HIRAP54198 1017 aaPredicted RBP17.52■□□□□ 0.4
COL6A3-211ENST00000491233 NEXNQ0ZGT2 675 aa17.52■□□□□ 0.4
COL6A3-211ENST00000491233 DOK7Q18PE1 504 aa17.52■□□□□ 0.4
COL6A3-211ENST00000491233 G2E3Q7L622 706 aa17.52■□□□□ 0.4
COL6A3-211ENST00000491233 GLIS2Q9BZE0 524 aaPredicted RBP17.52■□□□□ 0.4
COL6A3-211ENST00000491233 PODXL2Q9NZ53 605 aa17.52■□□□□ 0.4
COL6A3-211ENST00000491233 WDR33Q9C0J8 1336 aaKnown RBP17.51■□□□□ 0.39
COL6A3-211ENST00000491233 CTSWP56202 376 aa17.51■□□□□ 0.39
COL6A3-211ENST00000491233 CWF19L2Q2TBE0 894 aaKnown RBP17.51■□□□□ 0.39
COL6A3-211ENST00000491233 NCBP3Q53F19 620 aaKnown RBP17.51■□□□□ 0.39
COL6A3-211ENST00000491233 CST9Q5W186 159 aa17.51■□□□□ 0.39
COL6A3-211ENST00000491233 AIDAQ96BJ3 306 aa17.51■□□□□ 0.39
COL6A3-211ENST00000491233 ANKIB1Q9P2G1 1089 aa17.51■□□□□ 0.39
COL6A3-211ENST00000491233 NEURL1BA8MQ27 555 aa17.5■□□□□ 0.39
COL6A3-211ENST00000491233 H7C1D1 291 aa17.5■□□□□ 0.39
COL6A3-211ENST00000491233 PAXIP1Q6ZW49 1069 aaPredicted RBP17.5■□□□□ 0.39
COL6A3-211ENST00000491233 ANKRD18AQ8IVF6 992 aa17.5■□□□□ 0.39
COL6A3-211ENST00000491233 PGAP2Q9UHJ9 254 aa17.5■□□□□ 0.39
COL6A3-211ENST00000491233 GGA1Q9UJY5 639 aa17.5■□□□□ 0.39
COL6A3-211ENST00000491233 SALL2Q9Y467 1007 aaPredicted RBP17.5■□□□□ 0.39
COL6A3-211ENST00000491233 POLR2AP24928 1970 aaKnown RBP17.49■□□□□ 0.39
COL6A3-211ENST00000491233 SLC4A2P04920 1241 aa17.49■□□□□ 0.39
COL6A3-211ENST00000491233 ZC3H15Q8WU90 426 aaKnown RBP17.49■□□□□ 0.39
COL6A3-211ENST00000491233 DPF2Q92785 391 aa17.49■□□□□ 0.39
COL6A3-211ENST00000491233 CAPNS2Q96L46 248 aa17.49■□□□□ 0.39
COL6A3-211ENST00000491233 ZC3H12CQ9C0D7 883 aaKnown RBP17.49■□□□□ 0.39
COL6A3-211ENST00000491233 KCNQ5Q9NR82 932 aa17.49■□□□□ 0.39
COL6A3-211ENST00000491233 TLL2Q9Y6L7 1015 aa17.49■□□□□ 0.39
COL6A3-211ENST00000491233 ZNF646O15015 1829 aaPredicted RBP17.49■□□□□ 0.39
COL6A3-211ENST00000491233 XDHP47989 1333 aa17.48■□□□□ 0.39
COL6A3-211ENST00000491233 CAPN15O75808 1086 aa17.48■□□□□ 0.39
COL6A3-211ENST00000491233 CELF2O95319 508 aaKnown RBP17.48■□□□□ 0.39
COL6A3-211ENST00000491233 RPS12P25398 132 aaKnown RBP17.48■□□□□ 0.39
COL6A3-211ENST00000491233 CTCFP49711 727 aaPredicted RBP17.48■□□□□ 0.39
COL6A3-211ENST00000491233 FLIIQ13045 1269 aa17.48■□□□□ 0.39
COL6A3-211ENST00000491233 GRM1Q13255 1194 aa17.48■□□□□ 0.39
COL6A3-211ENST00000491233 SAMD7Q7Z3H4 446 aa17.48■□□□□ 0.39
COL6A3-211ENST00000491233 CDC5LQ99459 802 aaKnown RBP17.48■□□□□ 0.39
COL6A3-211ENST00000491233 WBP1LQ9NX94 342 aa17.48■□□□□ 0.39
COL6A3-211ENST00000491233 G3V3G9 751 aa17.47■□□□□ 0.39
COL6A3-211ENST00000491233 ECE1P42892 770 aa17.47■□□□□ 0.39
COL6A3-211ENST00000491233 TBC1D10BQ4KMP7 808 aaPredicted RBP17.47■□□□□ 0.39
COL6A3-211ENST00000491233 DCAF8Q5TAQ9 597 aa17.47■□□□□ 0.39
COL6A3-211ENST00000491233 CYP4F22Q6NT55 531 aa17.47■□□□□ 0.39
COL6A3-211ENST00000491233 UBE3BQ7Z3V4 1068 aa17.47■□□□□ 0.39
COL6A3-211ENST00000491233 TTLL11Q8NHH1 800 aa17.47■□□□□ 0.39
COL6A3-211ENST00000491233 GREM2Q9H772 168 aa17.47■□□□□ 0.39
COL6A3-211ENST00000491233 ZNF408Q9H9D4 720 aa17.47■□□□□ 0.39
COL6A3-211ENST00000491233 A0A1B0GUL6 1792 aa17.47■□□□□ 0.39
COL6A3-211ENST00000491233 ZNF609O15014 1411 aa17.47■□□□□ 0.39
COL6A3-211ENST00000491233 EGFRP00533 1210 aa17.46■□□□□ 0.39
COL6A3-211ENST00000491233 FKBP5Q13451 457 aaPredicted RBP17.46■□□□□ 0.39
COL6A3-211ENST00000491233 CDC37L1Q7L3B6 337 aa17.46■□□□□ 0.39
COL6A3-211ENST00000491233 WDR63Q8IWG1 891 aa17.46■□□□□ 0.39
COL6A3-211ENST00000491233 MAP2K1Q02750 393 aaPredicted RBP17.45■□□□□ 0.38
COL6A3-211ENST00000491233 EXOSC9Q06265 439 aaKnown RBP17.45■□□□□ 0.38
COL6A3-211ENST00000491233 DNAAF4Q8WXU2 420 aa17.45■□□□□ 0.38
COL6A3-211ENST00000491233 PRDM10Q9NQV6 1147 aa17.45■□□□□ 0.38
COL6A3-211ENST00000491233 H7C1W4 665 aa17.44■□□□□ 0.38
COL6A3-211ENST00000491233 VAMP4O75379 141 aa17.44■□□□□ 0.38
COL6A3-211ENST00000491233 VIL1P09327 827 aaKnown RBP17.44■□□□□ 0.38
COL6A3-211ENST00000491233 ATP2B4P23634 1241 aa17.44■□□□□ 0.38
COL6A3-211ENST00000491233 GCKRQ14397 625 aa17.44■□□□□ 0.38
COL6A3-211ENST00000491233 KIF4BQ2VIQ3 1234 aa17.44■□□□□ 0.38
COL6A3-211ENST00000491233 RBM26Q5T8P6 1007 aaKnown RBP17.44■□□□□ 0.38
COL6A3-211ENST00000491233 SAPCD2Q86UD0 394 aa17.44■□□□□ 0.38
COL6A3-211ENST00000491233 USP48Q86UV5 1035 aa17.44■□□□□ 0.38
COL6A3-211ENST00000491233 MED23Q9ULK4 1368 aa17.43■□□□□ 0.38
COL6A3-211ENST00000491233 HSPA8P11142 646 aaKnown RBP17.43■□□□□ 0.38
COL6A3-211ENST00000491233 LBX1P52954 281 aa17.43■□□□□ 0.38
COL6A3-211ENST00000491233 MYH16Q9H6N6 1097 aa17.43■□□□□ 0.38
COL6A3-211ENST00000491233 ADM5C9JUS6 153 aa17.42■□□□□ 0.38
COL6A3-211ENST00000491233 CASP7P55210 303 aa17.42■□□□□ 0.38
COL6A3-211ENST00000491233 FAM161AQ3B820 660 aa17.42■□□□□ 0.38
COL6A3-211ENST00000491233 RSBN1LQ6PCB5 846 aaPredicted RBP17.42■□□□□ 0.38
COL6A3-211ENST00000491233 DLK2Q6UY11 383 aa17.42■□□□□ 0.38
COL6A3-211ENST00000491233 KRT26Q7Z3Y9 468 aa17.42■□□□□ 0.38
COL6A3-211ENST00000491233 FAM9BQ8IZU0 186 aa17.42■□□□□ 0.38
COL6A3-211ENST00000491233 LINS1Q8NG48 757 aa17.42■□□□□ 0.38
COL6A3-211ENST00000491233 PLA2G12BQ9BX93 195 aa17.42■□□□□ 0.38
COL6A3-211ENST00000491233 SPINK5Q9NQ38 1064 aaPredicted RBP17.42■□□□□ 0.38
COL6A3-211ENST00000491233 BSDC1Q9NW68 430 aaPredicted RBP17.42■□□□□ 0.38
COL6A3-211ENST00000491233 MINPP1Q9UNW1 487 aa17.42■□□□□ 0.38
COL6A3-211ENST00000491233 WTIPA6NIX2 430 aaPredicted RBP17.41■□□□□ 0.38
COL6A3-211ENST00000491233 AOC2O75106 756 aa17.41■□□□□ 0.38
COL6A3-211ENST00000491233 IGHMBP2P38935 993 aaKnown RBP17.41■□□□□ 0.38
COL6A3-211ENST00000491233 HHIPL1Q96JK4 782 aa17.41■□□□□ 0.38
COL6A3-211ENST00000491233 GGA3Q9NZ52 723 aa17.41■□□□□ 0.38
COL6A3-211ENST00000491233 ITGA6P23229 1130 aa17.4■□□□□ 0.38
COL6A3-211ENST00000491233 CCT4P50991 539 aaKnown RBP17.4■□□□□ 0.38
COL6A3-211ENST00000491233 AGBL3Q8NEM8 1001 aa17.4■□□□□ 0.38
COL6A3-211ENST00000491233 DCPSQ96C86 337 aaKnown RBP17.4■□□□□ 0.38
COL6A3-211ENST00000491233 ASTN2O75129 1339 aaPredicted RBP17.4■□□□□ 0.38
COL6A3-211ENST00000491233 F6X3S4 739 aa17.39■□□□□ 0.37
COL6A3-211ENST00000491233 ZNF280AP59817 542 aaPredicted RBP17.39■□□□□ 0.37
COL6A3-211ENST00000491233 PODNQ7Z5L7 613 aa17.39■□□□□ 0.37
COL6A3-211ENST00000491233 BEGAINQ9BUH8 593 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms