RNA–Protein interactions for RNA: ENST00000490833.5

FN1-223, Transcript of fibronectin 1, human

TSL 3

Gene FN1, Length 699 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FN1-223	ENST00000490833	RUFY3	Q7L099	469 aa		7.56	□□□□□ -1.2
FN1-223	ENST00000490833	TMEM87A	Q8NBN3	555 aa		7.56	□□□□□ -1.2
FN1-223	ENST00000490833	XAGE3	Q8WTP9	111 aa		7.56	□□□□□ -1.2
FN1-223	ENST00000490833	LSG1	Q9H089	658 aa	Known RBP	7.56	□□□□□ -1.2
FN1-223	ENST00000490833	BICC1	Q9H694	974 aa	Known RBP	7.56	□□□□□ -1.2
FN1-223	ENST00000490833	HELLS	Q9NRZ9	838 aa		7.56	□□□□□ -1.2
FN1-223	ENST00000490833	PDRG1	Q9NUG6	133 aa		7.56	□□□□□ -1.2
FN1-223	ENST00000490833	CCDC171	Q6TFL3	1326 aa		7.55	□□□□□ -1.2
FN1-223	ENST00000490833		A0A087WZG4	1122 aa		7.55	□□□□□ -1.2
FN1-223	ENST00000490833		H7C1W4	665 aa		7.55	□□□□□ -1.2
FN1-223	ENST00000490833	DHX16	O60231	1041 aa	Known RBP	7.55	□□□□□ -1.2
FN1-223	ENST00000490833	IGSF3	O75054	1194 aa		7.55	□□□□□ -1.2
FN1-223	ENST00000490833	TPM3	P06753	285 aa		7.55	□□□□□ -1.2
FN1-223	ENST00000490833	XRCC6	P12956	609 aa	Known RBP eCLIP	7.55	□□□□□ -1.2
FN1-223	ENST00000490833	SSFA2	P28290	1259 aa		7.55	□□□□□ -1.2
FN1-223	ENST00000490833	NASP	P49321	788 aa	Predicted RBP	7.55	□□□□□ -1.2
FN1-223	ENST00000490833	UBE2H	P62256	183 aa		7.55	□□□□□ -1.2
FN1-223	ENST00000490833	AIMP1	Q12904	312 aa	Known RBP	7.55	□□□□□ -1.2
FN1-223	ENST00000490833	NECTIN1	Q15223	517 aa		7.55	□□□□□ -1.2
FN1-223	ENST00000490833	CCDC158	Q5M9N0	1113 aa		7.55	□□□□□ -1.2
FN1-223	ENST00000490833	TMED8	Q6PL24	325 aa	Predicted RBP	7.55	□□□□□ -1.2
FN1-223	ENST00000490833	BLOC1S2	Q6QNY1	142 aa		7.55	□□□□□ -1.2
FN1-223	ENST00000490833	ZNF496	Q96IT1	587 aa	Predicted RBP	7.55	□□□□□ -1.2
FN1-223	ENST00000490833	MYD88	Q99836	296 aa		7.55	□□□□□ -1.2
FN1-223	ENST00000490833	LLPH	Q9BRT6	129 aa	Known RBP	7.55	□□□□□ -1.2
FN1-223	ENST00000490833	FSD1	Q9BTV5	496 aa		7.55	□□□□□ -1.2
FN1-223	ENST00000490833	SCAND2P	Q9GZW5	306 aa	Predicted RBP	7.55	□□□□□ -1.2
FN1-223	ENST00000490833	BCL2L12	Q9HB09	334 aa		7.55	□□□□□ -1.2
FN1-223	ENST00000490833	LMBRD1	Q9NUN5	540 aa		7.55	□□□□□ -1.2
FN1-223	ENST00000490833	SNX14	Q9Y5W7	946 aa		7.55	□□□□□ -1.2
FN1-223	ENST00000490833	CYP27B1	O15528	508 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	KCNQ3	O43525	872 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	STX6	O43752	255 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	EVI5	O60447	810 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	PRPF40A	O75400	957 aa	Known RBP	7.54	□□□□□ -1.2
FN1-223	ENST00000490833	IGKV5-2	P06315	115 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	ZSCAN22	P10073	491 aa	Predicted RBP	7.54	□□□□□ -1.2
FN1-223	ENST00000490833	HMGN5	P82970	282 aa	Known RBP	7.54	□□□□□ -1.2
FN1-223	ENST00000490833	XPC	Q01831	940 aa	Predicted RBP	7.54	□□□□□ -1.2
FN1-223	ENST00000490833	TTF1	Q15361	905 aa	Predicted RBP	7.54	□□□□□ -1.2
FN1-223	ENST00000490833	CCDC57	Q2TAC2	916 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	MCMDC2	Q4G0Z9	681 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	USPL1	Q5W0Q7	1092 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	LRSAM1	Q6UWE0	723 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	KIF6	Q6ZMV9	814 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	SUCLG2	Q96I99	432 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	TTC14	Q96N46	770 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	HAUS7	Q99871	368 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	LARP6	Q9BRS8	491 aa	Known RBP	7.54	□□□□□ -1.2
FN1-223	ENST00000490833	PLA2G12B	Q9BX93	195 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	GZF1	Q9H116	711 aa	Predicted RBP	7.54	□□□□□ -1.2
FN1-223	ENST00000490833	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	7.54	□□□□□ -1.2
FN1-223	ENST00000490833	TMOD3	Q9NYL9	352 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	CEP126	Q9P2H0	1117 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	PXDN	Q92626	1479 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	SCN11A	Q9UI33	1791 aa		7.54	□□□□□ -1.2
FN1-223	ENST00000490833	CD2BP2	O95400	341 aa	Known RBP	7.53	□□□□□ -1.2
FN1-223	ENST00000490833	MYL6B	P14649	208 aa		7.53	□□□□□ -1.2
FN1-223	ENST00000490833	CAST	P20810	708 aa	Known RBP	7.53	□□□□□ -1.2
FN1-223	ENST00000490833	FOSB	P53539	338 aa		7.53	□□□□□ -1.2
FN1-223	ENST00000490833	CWF19L2	Q2TBE0	894 aa	Known RBP	7.53	□□□□□ -1.2
FN1-223	ENST00000490833	TNNI3K	Q59H18	835 aa		7.53	□□□□□ -1.2
FN1-223	ENST00000490833	BRINP3	Q76B58	766 aa		7.53	□□□□□ -1.2
FN1-223	ENST00000490833	FBXL16	Q8N461	479 aa		7.53	□□□□□ -1.2
FN1-223	ENST00000490833	DDX27	Q96GQ7	796 aa	Known RBP	7.53	□□□□□ -1.2
FN1-223	ENST00000490833	PPP1R9B	Q96SB3	815 aa		7.53	□□□□□ -1.2
FN1-223	ENST00000490833	DSCC1	Q9BVC3	393 aa		7.53	□□□□□ -1.2
FN1-223	ENST00000490833	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	7.53	□□□□□ -1.2
FN1-223	ENST00000490833	CFAP45	Q9UL16	551 aa		7.53	□□□□□ -1.2
FN1-223	ENST00000490833	THRAP3	Q9Y2W1	955 aa	Known RBP	7.53	□□□□□ -1.2
FN1-223	ENST00000490833	FPGT-TNNI3K	V9GXZ4	949 aa		7.53	□□□□□ -1.2
FN1-223	ENST00000490833	SIPA1L3	O60292	1781 aa	Predicted RBP	7.53	□□□□□ -1.2
FN1-223	ENST00000490833	KDM6A	O15550	1401 aa	Predicted RBP	7.52	□□□□□ -1.2
FN1-223	ENST00000490833	GOLGA6L4	A6NEF3	574 aa		7.52	□□□□□ -1.21
FN1-223	ENST00000490833	ERVV-1	B6SEH8	477 aa		7.52	□□□□□ -1.21
FN1-223	ENST00000490833	SASH1	O94885	1247 aa		7.52	□□□□□ -1.21
FN1-223	ENST00000490833	PCCA	P05165	728 aa	Predicted RBP	7.52	□□□□□ -1.21
FN1-223	ENST00000490833	CLCN1	P35523	988 aa		7.52	□□□□□ -1.21
FN1-223	ENST00000490833	NT5C2	P49902	561 aa		7.52	□□□□□ -1.21
FN1-223	ENST00000490833	KRT85	P78386	507 aa		7.52	□□□□□ -1.21
FN1-223	ENST00000490833	MAP3K9	P80192	1104 aa		7.52	□□□□□ -1.21
FN1-223	ENST00000490833	PTPN12	Q05209	780 aa	Known RBP	7.52	□□□□□ -1.21
FN1-223	ENST00000490833	TCIRG1	Q13488	830 aa		7.52	□□□□□ -1.21
FN1-223	ENST00000490833	DHX8	Q14562	1220 aa	Known RBP	7.52	□□□□□ -1.21
FN1-223	ENST00000490833	ZSCAN23	Q3MJ62	389 aa		7.52	□□□□□ -1.21
FN1-223	ENST00000490833	CREB3L3	Q68CJ9	461 aa		7.52	□□□□□ -1.21
FN1-223	ENST00000490833	KBTBD3	Q8NAB2	608 aa		7.52	□□□□□ -1.21
FN1-223	ENST00000490833	EAF2	Q96CJ1	260 aa	Predicted RBP	7.52	□□□□□ -1.21
FN1-223	ENST00000490833	RBM33	Q96EV2	1170 aa	Known RBP	7.52	□□□□□ -1.21
FN1-223	ENST00000490833	ZNF512B	Q96KM6	892 aa	Predicted RBP	7.52	□□□□□ -1.21
FN1-223	ENST00000490833	JAKMIP1	Q96N16	626 aa	Known RBP	7.52	□□□□□ -1.21
FN1-223	ENST00000490833	USP16	Q9Y5T5	823 aa		7.52	□□□□□ -1.21
FN1-223	ENST00000490833	PARP4	Q9UKK3	1724 aa	Known RBP	7.52	□□□□□ -1.21
FN1-223	ENST00000490833	ELP1	O95163	1332 aa		7.52	□□□□□ -1.21
FN1-223	ENST00000490833	SH3TC1	Q8TE82	1336 aa		7.52	□□□□□ -1.21
FN1-223	ENST00000490833	EYA2	O00167	538 aa		7.51	□□□□□ -1.21
FN1-223	ENST00000490833	MSN	P26038	577 aa	Known RBP	7.51	□□□□□ -1.21
FN1-223	ENST00000490833	TERF1	P54274	439 aa		7.51	□□□□□ -1.21
FN1-223	ENST00000490833	AK2	P54819	239 aa		7.51	□□□□□ -1.21
FN1-223	ENST00000490833	FGD1	P98174	961 aa		7.51	□□□□□ -1.21

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