RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 SPATS2Q86XZ4 545 aaKnown RBP8.22□□□□□ -1.09
SYNE1-228ENST00000490135 MYLK4Q86YV6 388 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-228ENST00000490135 CCDC65Q8IXS2 484 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 CNNM3Q8NE01 707 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 MKNK2Q9HBH9 465 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 POLKQ9UBT6 870 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 LRPPRCP42704 1394 aaKnown RBP8.22□□□□□ -1.09
SYNE1-228ENST00000490135 HMGB1P1B2RPK0 211 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-228ENST00000490135 PNMA6AP0CW24 399 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-228ENST00000490135 SGSM3Q96HU1 749 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 PDE6BP35913 854 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 SESN3P58005 492 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 CKAP4Q07065 602 aaKnown RBP8.22□□□□□ -1.09
SYNE1-228ENST00000490135 CCDC117Q8IWD4 279 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-228ENST00000490135 GCC1Q96CN9 775 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 CARMIL1Q5VZK9 1371 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 LRRD1A4D1F6 860 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 NUTM2BA6NNL0 878 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-228ENST00000490135 NUTM2EB1AL46 878 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-228ENST00000490135 ZBTB16Q05516 673 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 KLHL10Q6JEL2 608 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 NUTM2AQ8IVF1 878 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-228ENST00000490135 CCDC63Q8NA47 563 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 PLVAPQ9BX97 442 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 KIF9Q9HAQ2 790 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 ZEB2O60315 1214 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 CCT5P48643 541 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 MVPQ14764 893 aaKnown RBP8.22□□□□□ -1.09
SYNE1-228ENST00000490135 AMOTQ4VCS5 1084 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 SPTY2D1Q68D10 685 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-228ENST00000490135 CCDC174Q6PII3 467 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 CARD6Q9BX69 1037 aa8.22□□□□□ -1.09
SYNE1-228ENST00000490135 ELP1O95163 1332 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 ANKRD65E5RJM6 399 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 ECM2O94769 699 aaPredicted RBP8.21□□□□□ -1.09
SYNE1-228ENST00000490135 TOP1P11387 765 aaKnown RBP8.21□□□□□ -1.09
SYNE1-228ENST00000490135 E2F5Q15329 346 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 KIAA0753Q2KHM9 967 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 SDCCAG8Q86SQ7 713 aaPredicted RBP8.21□□□□□ -1.09
SYNE1-228ENST00000490135 GPR161Q8N6U8 529 aaKnown RBP8.21□□□□□ -1.09
SYNE1-228ENST00000490135 CTAGE15A4D2H0 777 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 CHUKO15111 745 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 CTAGE8P0CG41 777 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 STX1AQ16623 288 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 IFI16Q16666 785 aaKnown RBP8.21□□□□□ -1.09
SYNE1-228ENST00000490135 ACBD5Q5T8D3 534 aaPredicted RBP8.21□□□□□ -1.09
SYNE1-228ENST00000490135 CTAGE6Q86UF2 777 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 CTAGE4Q8IX94 777 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 SYCP3Q8IZU3 236 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 ITFG2Q969R8 447 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 VTI1AQ96AJ9 217 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 TBC1D31Q96DN5 1066 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 BICD1Q96G01 975 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 ANO10Q9NW15 660 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 TMEM63CQ9P1W3 806 aa8.21□□□□□ -1.09
SYNE1-228ENST00000490135 CCDC40Q4G0X9 1142 aa8.21□□□□□ -1.1
SYNE1-228ENST00000490135 TCERG1LQ5VWI1 586 aa8.21□□□□□ -1.1
SYNE1-228ENST00000490135 CCDC89Q8N998 374 aa8.21□□□□□ -1.1
SYNE1-228ENST00000490135 CEP126Q9P2H0 1117 aa8.21□□□□□ -1.1
SYNE1-228ENST00000490135 GOLGA6CA6NDK9 693 aa8.21□□□□□ -1.1
SYNE1-228ENST00000490135 GOLGA6DP0CG33 693 aa8.21□□□□□ -1.1
SYNE1-228ENST00000490135 TPP2P29144 1249 aaPredicted RBP8.21□□□□□ -1.1
SYNE1-228ENST00000490135 ATP11AP98196 1134 aa8.21□□□□□ -1.1
SYNE1-228ENST00000490135 SLFNL1Q499Z3 407 aa8.21□□□□□ -1.1
SYNE1-228ENST00000490135 BICDL1Q6ZP65 573 aa8.21□□□□□ -1.1
SYNE1-228ENST00000490135 CCDC144CPQ8IYA2 1237 aa8.21□□□□□ -1.1
SYNE1-228ENST00000490135 FAM71BQ8TC56 605 aa8.21□□□□□ -1.1
SYNE1-228ENST00000490135 BICC1Q9H694 974 aaKnown RBP8.21□□□□□ -1.1
SYNE1-228ENST00000490135 PDE11AQ9HCR9 933 aa8.21□□□□□ -1.1
SYNE1-228ENST00000490135 GOLGA6AQ9NYA3 693 aa8.21□□□□□ -1.1
SYNE1-228ENST00000490135 RHOXF2BP0C7M4 288 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 RFX1P22670 979 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 GBP1P32455 592 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 TUBB4BP68371 445 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 RINLQ6ZS11 566 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 ARL10Q8N8L6 244 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 RMDN2Q96LZ7 410 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 RHOXF2Q9BQY4 288 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 SPTLC3Q9NUV7 552 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 CNPY2Q9Y2B0 182 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 IDH1O75874 414 aaKnown RBP8.2□□□□□ -1.1
SYNE1-228ENST00000490135 ZFYP08048 801 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-228ENST00000490135 ZNF165P49910 485 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 ZCRB1Q8TBF4 217 aaKnown RBP8.2□□□□□ -1.1
SYNE1-228ENST00000490135 DTNBP1Q96EV8 351 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 PFDN4Q9NQP4 134 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 STX6O43752 255 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 MTIF2P46199 727 aaKnown RBP8.2□□□□□ -1.1
SYNE1-228ENST00000490135 TAF12Q16514 161 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 AACSQ86V21 672 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 GPT2Q8TD30 523 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 BAIAP2L1Q9UHR4 511 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 SPG7Q9UQ90 795 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 PAX7P23759 505 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 DYNC1I2Q13409 638 aaKnown RBP8.2□□□□□ -1.1
SYNE1-228ENST00000490135 TOM1L2Q6ZVM7 507 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 ANKS4BQ8N8V4 417 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 CCDC110Q8TBZ0 833 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 ZBTB10Q96DT7 871 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 CCDC77Q9BR77 488 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms