RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 CPSF6Q16630 551 aaKnown RBP eCLIP5.89□□□□□ -1.47
DEPDC1-204ENST00000489862 TSEN2Q8NCE0 465 aaKnown RBP5.89□□□□□ -1.47
DEPDC1-204ENST00000489862 MYRFLQ96LU7 910 aa5.89□□□□□ -1.47
DEPDC1-204ENST00000489862 TSPAN10Q9H1Z9 355 aaPredicted RBP5.89□□□□□ -1.47
DEPDC1-204ENST00000489862 RASA1P20936 1047 aa5.88□□□□□ -1.47
DEPDC1-204ENST00000489862 MSMPQ1L6U9 139 aa5.88□□□□□ -1.47
DEPDC1-204ENST00000489862 C14orf37Q86TY3 774 aa5.88□□□□□ -1.47
DEPDC1-204ENST00000489862 SIX5Q8N196 739 aa5.88□□□□□ -1.47
DEPDC1-204ENST00000489862 FAM46AQ96IP4 442 aaKnown RBP5.88□□□□□ -1.47
DEPDC1-204ENST00000489862 HSH2DQ96JZ2 352 aa5.88□□□□□ -1.47
DEPDC1-204ENST00000489862 PPP1R12CQ9BZL4 782 aa5.88□□□□□ -1.47
DEPDC1-204ENST00000489862 GSX2Q9BZM3 304 aa5.88□□□□□ -1.47
DEPDC1-204ENST00000489862 FOSL1P15407 271 aa5.88□□□□□ -1.47
DEPDC1-204ENST00000489862 ARID4AP29374 1257 aaPredicted RBP5.88□□□□□ -1.47
DEPDC1-204ENST00000489862 SIAH1Q8IUQ4 282 aa5.88□□□□□ -1.47
DEPDC1-204ENST00000489862 HIF1AQ16665 826 aa5.87□□□□□ -1.47
DEPDC1-204ENST00000489862 FAM20CQ8IXL6 584 aa5.87□□□□□ -1.47
DEPDC1-204ENST00000489862 SMG9Q9H0W8 520 aaKnown RBP5.87□□□□□ -1.47
DEPDC1-204ENST00000489862 KCNF1Q9H3M0 494 aa5.87□□□□□ -1.47
DEPDC1-204ENST00000489862 ZNF777Q9ULD5 760 aaPredicted RBP5.87□□□□□ -1.47
DEPDC1-204ENST00000489862 CHMP3Q9Y3E7 222 aa5.87□□□□□ -1.47
DEPDC1-204ENST00000489862 HCN4Q9Y3Q4 1203 aa5.87□□□□□ -1.47
DEPDC1-204ENST00000489862 M0R2N6 131 aa5.86□□□□□ -1.47
DEPDC1-204ENST00000489862 LGR5O75473 907 aa5.86□□□□□ -1.47
DEPDC1-204ENST00000489862 MAP3K6O95382 1288 aa5.86□□□□□ -1.47
DEPDC1-204ENST00000489862 PLAURQ03405 335 aa5.86□□□□□ -1.47
DEPDC1-204ENST00000489862 CRTC2Q53ET0 693 aaPredicted RBP5.86□□□□□ -1.47
DEPDC1-204ENST00000489862 KANK4Q5T7N3 995 aaPredicted RBP5.86□□□□□ -1.47
DEPDC1-204ENST00000489862 FLCNQ8NFG4 579 aa5.86□□□□□ -1.47
DEPDC1-204ENST00000489862 BSDC1Q9NW68 430 aaPredicted RBP5.86□□□□□ -1.47
DEPDC1-204ENST00000489862 RBM19Q9Y4C8 960 aaKnown RBP5.86□□□□□ -1.47
DEPDC1-204ENST00000489862 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.86□□□□□ -1.47
DEPDC1-204ENST00000489862 C21orf2O43822 256 aa5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 LMOD1P29536 600 aaPredicted RBP5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 PSMA6P60900 246 aaKnown RBP5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 BEND4Q6ZU67 534 aa5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 TRPM4Q8TD43 1214 aa5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 FAM84AQ96KN4 292 aa5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 SUSD3Q96L08 255 aa5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 OSBPL1AQ9BXW6 950 aa5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 MUC3BQ9H195 1237 aa5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 SUPT5HO00267 1087 aaKnown RBP5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 SART1O43290 800 aaKnown RBP5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 PPP1R12BO60237 982 aaPredicted RBP5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 SEC13P55735 322 aa5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 COL19A1Q14993 1142 aa5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 RTN1Q16799 776 aa5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 LARP1Q6PKG0 1096 aaKnown RBP5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 TTLL10Q6ZVT0 673 aa5.85□□□□□ -1.47
DEPDC1-204ENST00000489862 DPYDQ12882 1025 aa5.84□□□□□ -1.47
DEPDC1-204ENST00000489862 PTK7Q13308 1070 aa5.84□□□□□ -1.47
DEPDC1-204ENST00000489862 SETDB1Q15047 1291 aa5.84□□□□□ -1.47
DEPDC1-204ENST00000489862 ACAD11Q709F0 780 aa5.84□□□□□ -1.47
DEPDC1-204ENST00000489862 CACTIN-AS1Q8N1I8 211 aa5.84□□□□□ -1.47
DEPDC1-204ENST00000489862 IL22RA1Q8N6P7 574 aa5.84□□□□□ -1.47
DEPDC1-204ENST00000489862 GAS2L2Q8NHY3 880 aa5.84□□□□□ -1.47
DEPDC1-204ENST00000489862 CHMP7Q8WUX9 453 aaPredicted RBP5.84□□□□□ -1.47
DEPDC1-204ENST00000489862 TMEM40Q8WWA1 233 aa5.84□□□□□ -1.47
DEPDC1-204ENST00000489862 PHACTR1Q9C0D0 580 aa5.84□□□□□ -1.47
DEPDC1-204ENST00000489862 PODXL2Q9NZ53 605 aa5.84□□□□□ -1.47
DEPDC1-204ENST00000489862 HIF3AQ9Y2N7 669 aa5.84□□□□□ -1.47
DEPDC1-204ENST00000489862 ATAD2Q6PL18 1390 aa5.83□□□□□ -1.48
DEPDC1-204ENST00000489862 GPLD1P80108 840 aa5.83□□□□□ -1.48
DEPDC1-204ENST00000489862 POTEAQ6S8J7 498 aa5.83□□□□□ -1.48
DEPDC1-204ENST00000489862 DBX2Q6ZNG2 339 aa5.83□□□□□ -1.48
DEPDC1-204ENST00000489862 DHX32Q7L7V1 743 aaKnown RBP5.83□□□□□ -1.48
DEPDC1-204ENST00000489862 BTLAQ7Z6A9 289 aa5.83□□□□□ -1.48
DEPDC1-204ENST00000489862 SCG3Q8WXD2 468 aaKnown RBP5.83□□□□□ -1.48
DEPDC1-204ENST00000489862 MFSD14AQ96MC6 490 aa5.83□□□□□ -1.48
DEPDC1-204ENST00000489862 HINFPQ9BQA5 517 aa5.83□□□□□ -1.48
DEPDC1-204ENST00000489862 VRTNQ9H8Y1 702 aa5.83□□□□□ -1.48
DEPDC1-204ENST00000489862 CARMIL2Q6F5E8 1435 aa5.83□□□□□ -1.48
DEPDC1-204ENST00000489862 USP17L15C9J2P7 530 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 USP17L10C9JJH3 530 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 USP17L13C9JLJ4 530 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 USP17L12C9JPN9 530 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 USP17L11C9JVI0 530 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 USP17L21D6R901 530 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 USP17L18D6R9N7 530 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 USP17L22D6RA61 530 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 USP17L17D6RBQ6 530 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 USP17L19D6RCP7 530 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 USP17L20D6RJB6 530 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 PSPNO60542 156 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 BMP3P12645 472 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 RAP1GAPP47736 663 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 HIRAP54198 1017 aaPredicted RBP5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 USP17L24Q0WX57 530 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 CDCA8Q53HL2 280 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 CFAP70Q5T0N1 1121 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 NFXL1Q6ZNB6 911 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 ZNF280CQ8ND82 737 aa5.82□□□□□ -1.48
DEPDC1-204ENST00000489862 EIF2AK2P19525 551 aaKnown RBP5.81□□□□□ -1.48
DEPDC1-204ENST00000489862 CFPP27918 469 aa5.81□□□□□ -1.48
DEPDC1-204ENST00000489862 ANKMY2Q8IV38 441 aa5.81□□□□□ -1.48
DEPDC1-204ENST00000489862 ALDH16A1Q8IZ83 802 aa5.81□□□□□ -1.48
DEPDC1-204ENST00000489862 C2orf49Q9BVC5 232 aaPredicted RBP5.81□□□□□ -1.48
DEPDC1-204ENST00000489862 FAM196BA6NMK8 535 aa5.81□□□□□ -1.48
DEPDC1-204ENST00000489862 ZBTB42B2RXF5 422 aa5.81□□□□□ -1.48
DEPDC1-204ENST00000489862 EPB42P16452 691 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms