RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 LAMB2P55268 1798 aa14.75□□□□□ -0.05
HDAC6-230ENST00000488543 SCN7AQ01118 1682 aa14.75□□□□□ -0.05
HDAC6-230ENST00000488543 EYA2O00167 538 aa14.75□□□□□ -0.05
HDAC6-230ENST00000488543 CIAO1O76071 339 aa14.75□□□□□ -0.05
HDAC6-230ENST00000488543 TAF7LQ5H9L4 462 aa14.75□□□□□ -0.05
HDAC6-230ENST00000488543 SNX21Q969T3 373 aa14.75□□□□□ -0.05
HDAC6-230ENST00000488543 PANK2Q9BZ23 570 aa14.75□□□□□ -0.05
HDAC6-230ENST00000488543 ABCC12Q96J65 1359 aa14.75□□□□□ -0.05
HDAC6-230ENST00000488543 IL15P40933 162 aaPredicted RBP14.74□□□□□ -0.05
HDAC6-230ENST00000488543 HSCBQ8IWL3 235 aa14.74□□□□□ -0.05
HDAC6-230ENST00000488543 RGL2O15211 777 aa14.74□□□□□ -0.05
HDAC6-230ENST00000488543 SF3B2Q13435 895 aaKnown RBP14.74□□□□□ -0.05
HDAC6-230ENST00000488543 TPTE2Q6XPS3 522 aa14.74□□□□□ -0.05
HDAC6-230ENST00000488543 ZNF609O15014 1411 aa14.74□□□□□ -0.05
HDAC6-230ENST00000488543 ANKRD18BA2A2Z9 1011 aa14.73□□□□□ -0.05
HDAC6-230ENST00000488543 NPHP1O15259 732 aa14.73□□□□□ -0.05
HDAC6-230ENST00000488543 LDHAL6AQ6ZMR3 332 aa14.73□□□□□ -0.05
HDAC6-230ENST00000488543 GPR108Q9NPR9 543 aa14.73□□□□□ -0.05
HDAC6-230ENST00000488543 LRP5O75197 1615 aa14.73□□□□□ -0.05
HDAC6-230ENST00000488543 TM4SF1P30408 202 aa14.73□□□□□ -0.05
HDAC6-230ENST00000488543 TIMM10P62072 90 aa14.73□□□□□ -0.05
HDAC6-230ENST00000488543 DBNDD2Q9BQY9 259 aa14.73□□□□□ -0.05
HDAC6-230ENST00000488543 PNPLA7Q6ZV29 1317 aa14.73□□□□□ -0.05
HDAC6-230ENST00000488543 EVI5LQ96CN4 794 aa14.72□□□□□ -0.05
HDAC6-230ENST00000488543 PDGFDQ9GZP0 370 aaPredicted RBP14.72□□□□□ -0.05
HDAC6-230ENST00000488543 CHMP5Q9NZZ3 219 aa14.72□□□□□ -0.05
HDAC6-230ENST00000488543 SGSM2O43147 1006 aa14.72□□□□□ -0.05
HDAC6-230ENST00000488543 ATP5JP18859 108 aa14.72□□□□□ -0.05
HDAC6-230ENST00000488543 DDR1Q08345 913 aa14.72□□□□□ -0.05
HDAC6-230ENST00000488543 MSL1Q68DK7 614 aa14.72□□□□□ -0.05
HDAC6-230ENST00000488543 NYXQ9GZU5 481 aa14.72□□□□□ -0.05
HDAC6-230ENST00000488543 BOLA2Q9H3K6 86 aa14.72□□□□□ -0.05
HDAC6-230ENST00000488543 FBXO3Q9UK99 471 aa14.72□□□□□ -0.05
HDAC6-230ENST00000488543 BAG6P46379 1132 aa14.71□□□□□ -0.05
HDAC6-230ENST00000488543 SLC15A2Q16348 729 aa14.71□□□□□ -0.05
HDAC6-230ENST00000488543 RIC1Q4ADV7 1423 aa14.71□□□□□ -0.05
HDAC6-230ENST00000488543 CCDC152Q4G0S7 254 aa14.71□□□□□ -0.05
HDAC6-230ENST00000488543 SLC10A5Q5PT55 438 aa14.71□□□□□ -0.05
HDAC6-230ENST00000488543 RIPOR2Q9Y4F9 1068 aa14.71□□□□□ -0.05
HDAC6-230ENST00000488543 CASZ1Q86V15 1759 aa14.71□□□□□ -0.05
HDAC6-230ENST00000488543 SERPINB2P05120 415 aa14.71□□□□□ -0.05
HDAC6-230ENST00000488543 HELBQ8NG08 1087 aaPredicted RBP14.71□□□□□ -0.05
HDAC6-230ENST00000488543 CNNM1Q9NRU3 951 aa14.71□□□□□ -0.05
HDAC6-230ENST00000488543 CARMIL3Q8ND23 1372 aa14.7□□□□□ -0.06
HDAC6-230ENST00000488543 RABEP1Q15276 862 aa14.7□□□□□ -0.06
HDAC6-230ENST00000488543 PRR5LQ6MZQ0 368 aa14.7□□□□□ -0.06
HDAC6-230ENST00000488543 NEUROD6Q96NK8 337 aa14.7□□□□□ -0.06
HDAC6-230ENST00000488543 ANO2Q9NQ90 1003 aa14.7□□□□□ -0.06
HDAC6-230ENST00000488543 SNAP23O00161 211 aa14.7□□□□□ -0.06
HDAC6-230ENST00000488543 TRAK2O60296 914 aa14.7□□□□□ -0.06
HDAC6-230ENST00000488543 XRCC6P12956 609 aaKnown RBP eCLIP14.7□□□□□ -0.06
HDAC6-230ENST00000488543 CNBD1Q8NA66 436 aa14.7□□□□□ -0.06
HDAC6-230ENST00000488543 NLRP3Q96P20 1036 aa14.7□□□□□ -0.06
HDAC6-230ENST00000488543 COL4A1P02462 1669 aa14.7□□□□□ -0.06
HDAC6-230ENST00000488543 EPB41L2O43491 1005 aaKnown RBP14.69□□□□□ -0.06
HDAC6-230ENST00000488543 SF3B3Q15393 1217 aaKnown RBP14.69□□□□□ -0.06
HDAC6-230ENST00000488543 RRAGDQ9NQL2 400 aaPredicted RBP14.69□□□□□ -0.06
HDAC6-230ENST00000488543 CEP126Q9P2H0 1117 aa14.69□□□□□ -0.06
HDAC6-230ENST00000488543 POLRMTO00411 1230 aaKnown RBP14.69□□□□□ -0.06
HDAC6-230ENST00000488543 CWC27Q6UX04 472 aaKnown RBP14.69□□□□□ -0.06
HDAC6-230ENST00000488543 IL17RAQ96F46 866 aa14.69□□□□□ -0.06
HDAC6-230ENST00000488543 LSG1Q9H089 658 aaKnown RBP14.69□□□□□ -0.06
HDAC6-230ENST00000488543 PALD1Q9ULE6 856 aa14.69□□□□□ -0.06
HDAC6-230ENST00000488543 TAF1P21675 1872 aa14.68□□□□□ -0.06
HDAC6-230ENST00000488543 COL24A1Q17RW2 1714 aa14.68□□□□□ -0.06
HDAC6-230ENST00000488543 HMGB2P26583 209 aaKnown RBP14.68□□□□□ -0.06
HDAC6-230ENST00000488543 METTL24Q5JXM2 366 aa14.68□□□□□ -0.06
HDAC6-230ENST00000488543 CELF1Q92879 486 aaKnown RBP14.68□□□□□ -0.06
HDAC6-230ENST00000488543 EDC3Q96F86 508 aaKnown RBP14.68□□□□□ -0.06
HDAC6-230ENST00000488543 MPHOSPH8Q99549 860 aa14.68□□□□□ -0.06
HDAC6-230ENST00000488543 DIAPH3Q9NSV4 1193 aa14.68□□□□□ -0.06
HDAC6-230ENST00000488543 NDUFB9Q9Y6M9 179 aa14.68□□□□□ -0.06
HDAC6-230ENST00000488543 TAF5LO75529 589 aa14.68□□□□□ -0.06
HDAC6-230ENST00000488543 HSP90B1P14625 803 aaKnown RBP14.68□□□□□ -0.06
HDAC6-230ENST00000488543 SLC51AQ86UW1 340 aa14.68□□□□□ -0.06
HDAC6-230ENST00000488543 HAUS7Q99871 368 aa14.68□□□□□ -0.06
HDAC6-230ENST00000488543 STK32BQ9NY57 414 aa14.68□□□□□ -0.06
HDAC6-230ENST00000488543 SPEF2Q9C093 1822 aa14.67□□□□□ -0.06
HDAC6-230ENST00000488543 RAD50Q92878 1312 aa14.67□□□□□ -0.06
HDAC6-230ENST00000488543 A0A1B0GUL7 405 aa14.67□□□□□ -0.06
HDAC6-230ENST00000488543 WTIPA6NIX2 430 aaPredicted RBP14.67□□□□□ -0.06
HDAC6-230ENST00000488543 NLGN1Q8N2Q7 840 aa14.67□□□□□ -0.06
HDAC6-230ENST00000488543 MMP10P09238 476 aa14.67□□□□□ -0.06
HDAC6-230ENST00000488543 ADORA1P30542 326 aa14.67□□□□□ -0.06
HDAC6-230ENST00000488543 FLAD1Q8NFF5 587 aa14.67□□□□□ -0.06
HDAC6-230ENST00000488543 TNPO1Q92973 898 aaKnown RBP14.67□□□□□ -0.06
HDAC6-230ENST00000488543 SNRKQ9NRH2 765 aa14.67□□□□□ -0.06
HDAC6-230ENST00000488543 NMIQ13287 307 aaPredicted RBP14.66□□□□□ -0.06
HDAC6-230ENST00000488543 RUFY2Q8WXA3 655 aa14.66□□□□□ -0.06
HDAC6-230ENST00000488543 FAM227BQ96M60 508 aa14.66□□□□□ -0.06
HDAC6-230ENST00000488543 SRCAPQ6ZRS2 3230 aa14.66□□□□□ -0.06
HDAC6-230ENST00000488543 GOLGA6L3A6NEY3 463 aa14.66□□□□□ -0.06
HDAC6-230ENST00000488543 HSPA4P34932 840 aa14.66□□□□□ -0.06
HDAC6-230ENST00000488543 IGHMBP2P38935 993 aaKnown RBP14.66□□□□□ -0.06
HDAC6-230ENST00000488543 ANAPC15P60006 121 aa14.66□□□□□ -0.06
HDAC6-230ENST00000488543 VGLL2Q8N8G2 317 aa14.66□□□□□ -0.06
HDAC6-230ENST00000488543 FSD1Q9BTV5 496 aa14.66□□□□□ -0.06
HDAC6-230ENST00000488543 ARAP2Q8WZ64 1704 aa14.66□□□□□ -0.06
HDAC6-230ENST00000488543 RFX7Q2KHR2 1363 aa14.66□□□□□ -0.06
HDAC6-230ENST00000488543 K7ELQ4 463 aaPredicted RBP14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms