RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 GNAI2P04899 355 aa12.9□□□□□ -0.34
SKA1-204ENST00000488454 CASP7P55210 303 aa12.9□□□□□ -0.34
SKA1-204ENST00000488454 CCDC152Q4G0S7 254 aa12.9□□□□□ -0.34
SKA1-204ENST00000488454 RPGRQ92834 1020 aaKnown RBP12.9□□□□□ -0.34
SKA1-204ENST00000488454 MEIS3Q99687 375 aa12.9□□□□□ -0.34
SKA1-204ENST00000488454 FHDC1Q9C0D6 1143 aaPredicted RBP12.9□□□□□ -0.34
SKA1-204ENST00000488454 A0A0G2JLW4 131 aa12.89□□□□□ -0.35
SKA1-204ENST00000488454 ZBTB7BO15156 539 aaPredicted RBP12.89□□□□□ -0.35
SKA1-204ENST00000488454 CTSWP56202 376 aa12.89□□□□□ -0.35
SKA1-204ENST00000488454 TMEM92Q6UXU6 159 aa12.89□□□□□ -0.35
SKA1-204ENST00000488454 ZNF622Q969S3 477 aaKnown RBP eCLIP12.89□□□□□ -0.357e-12■□□□□ 9.8
SKA1-204ENST00000488454 MASTLQ96GX5 879 aa12.89□□□□□ -0.35
SKA1-204ENST00000488454 RBM17Q96I25 401 aaKnown RBP12.89□□□□□ -0.35
SKA1-204ENST00000488454 SUCLG2Q96I99 432 aa12.89□□□□□ -0.35
SKA1-204ENST00000488454 PLA2G12BQ9BX93 195 aa12.89□□□□□ -0.35
SKA1-204ENST00000488454 CHMP3Q9Y3E7 222 aa12.89□□□□□ -0.35
SKA1-204ENST00000488454 ABCC12Q96J65 1359 aa12.89□□□□□ -0.35
SKA1-204ENST00000488454 KLRG2A4D1S0 409 aaPredicted RBP12.88□□□□□ -0.35
SKA1-204ENST00000488454 SRGNP10124 158 aa12.88□□□□□ -0.35
SKA1-204ENST00000488454 NPR1P16066 1061 aa12.88□□□□□ -0.35
SKA1-204ENST00000488454 ALDH1B1P30837 517 aa12.88□□□□□ -0.35
SKA1-204ENST00000488454 SF3B3Q15393 1217 aaKnown RBP12.88□□□□□ -0.35
SKA1-204ENST00000488454 DDX46Q7L014 1031 aaKnown RBP12.88□□□□□ -0.35
SKA1-204ENST00000488454 SYT17Q9BSW7 474 aa12.88□□□□□ -0.35
SKA1-204ENST00000488454 C10orf71Q711Q0 1435 aa12.88□□□□□ -0.35
SKA1-204ENST00000488454 DPEP1P16444 411 aa12.87□□□□□ -0.35
SKA1-204ENST00000488454 CHRNA5P30532 468 aa12.87□□□□□ -0.35
SKA1-204ENST00000488454 FOXO4P98177 505 aa12.87□□□□□ -0.35
SKA1-204ENST00000488454 STYK1Q6J9G0 422 aa12.87□□□□□ -0.35
SKA1-204ENST00000488454 LMBR1LQ6UX01 489 aa12.87□□□□□ -0.35
SKA1-204ENST00000488454 TTLL11Q8NHH1 800 aa12.87□□□□□ -0.35
SKA1-204ENST00000488454 CNKSR1Q969H4 720 aa12.87□□□□□ -0.35
SKA1-204ENST00000488454 CCDC85AQ96PX6 553 aaPredicted RBP12.87□□□□□ -0.35
SKA1-204ENST00000488454 PIM2Q9P1W9 311 aa12.87□□□□□ -0.35
SKA1-204ENST00000488454 LRRFIP2Q9Y608 721 aaKnown RBP12.87□□□□□ -0.35
SKA1-204ENST00000488454 ANKRD36CQ5JPF3 1778 aa12.86□□□□□ -0.35
SKA1-204ENST00000488454 CSF1RP07333 972 aa12.86□□□□□ -0.35
SKA1-204ENST00000488454 IFIT5Q13325 482 aaKnown RBP12.86□□□□□ -0.35
SKA1-204ENST00000488454 CCDC57Q2TAC2 916 aa12.86□□□□□ -0.35
SKA1-204ENST00000488454 CRY2Q49AN0 593 aa12.86□□□□□ -0.35
SKA1-204ENST00000488454 CRBNQ96SW2 442 aa12.86□□□□□ -0.35
SKA1-204ENST00000488454 TMX4Q9H1E5 349 aaPredicted RBP12.86□□□□□ -0.35
SKA1-204ENST00000488454 BICC1Q9H694 974 aaKnown RBP12.86□□□□□ -0.35
SKA1-204ENST00000488454 RIC1Q4ADV7 1423 aa12.86□□□□□ -0.35
SKA1-204ENST00000488454 COL24A1Q17RW2 1714 aa12.85□□□□□ -0.35
SKA1-204ENST00000488454 ANKRD18BA2A2Z9 1011 aa12.85□□□□□ -0.35
SKA1-204ENST00000488454 BBOX1O75936 387 aa12.85□□□□□ -0.35
SKA1-204ENST00000488454 NEFLP07196 543 aa12.85□□□□□ -0.35
SKA1-204ENST00000488454 HOXA10P31260 410 aaPredicted RBP12.85□□□□□ -0.35
SKA1-204ENST00000488454 TAF7LQ5H9L4 462 aa12.85□□□□□ -0.35
SKA1-204ENST00000488454 EPHA10Q5JZY3 1008 aa12.85□□□□□ -0.35
SKA1-204ENST00000488454 TTLL6Q8N841 843 aa12.85□□□□□ -0.35
SKA1-204ENST00000488454 NLGN2Q8NFZ4 835 aa12.85□□□□□ -0.35
SKA1-204ENST00000488454 CRAMP1Q96RY5 1269 aa12.85□□□□□ -0.35
SKA1-204ENST00000488454 CDC5LQ99459 802 aaKnown RBP12.85□□□□□ -0.35
SKA1-204ENST00000488454 ZBTB40Q9NUA8 1239 aa12.85□□□□□ -0.35
SKA1-204ENST00000488454 DALRD3Q5D0E6 543 aaKnown RBP12.84□□□□□ -0.35
SKA1-204ENST00000488454 ANKRD18AQ8IVF6 992 aa12.84□□□□□ -0.35
SKA1-204ENST00000488454 KAZALD1Q96I82 304 aa12.84□□□□□ -0.35
SKA1-204ENST00000488454 GREM2Q9H772 168 aa12.84□□□□□ -0.35
SKA1-204ENST00000488454 C1orf115Q9H7X2 142 aa12.84□□□□□ -0.35
SKA1-204ENST00000488454 NRXN2Q9P2S2 1712 aa12.84□□□□□ -0.35
SKA1-204ENST00000488454 AFDNP55196 1824 aaKnown RBP12.83□□□□□ -0.35
SKA1-204ENST00000488454 KCNA3P22001 575 aa12.83□□□□□ -0.36
SKA1-204ENST00000488454 ITGA6P23229 1130 aa12.83□□□□□ -0.36
SKA1-204ENST00000488454 IGHMBP2P38935 993 aaKnown RBP12.83□□□□□ -0.36
SKA1-204ENST00000488454 RPS8P62241 208 aaKnown RBP12.83□□□□□ -0.36
SKA1-204ENST00000488454 IRX6P78412 446 aaPredicted RBP12.83□□□□□ -0.36
SKA1-204ENST00000488454 GRAPQ13588 217 aa12.83□□□□□ -0.36
SKA1-204ENST00000488454 AAMPQ13685 434 aa12.83□□□□□ -0.36
SKA1-204ENST00000488454 FAM161AQ3B820 660 aa12.83□□□□□ -0.36
SKA1-204ENST00000488454 RABL6Q3YEC7 729 aaPredicted RBP12.83□□□□□ -0.36
SKA1-204ENST00000488454 GRAPLQ8TC17 118 aaPredicted RBP12.83□□□□□ -0.36
SKA1-204ENST00000488454 MPHOSPH8Q99549 860 aa12.83□□□□□ -0.36
SKA1-204ENST00000488454 SRGAP3O43295 1099 aa12.82□□□□□ -0.36
SKA1-204ENST00000488454 ATP8B2P98198 1209 aa12.82□□□□□ -0.36
SKA1-204ENST00000488454 ANKRD44Q8N8A2 993 aa12.82□□□□□ -0.36
SKA1-204ENST00000488454 SEC31BQ9NQW1 1179 aa12.82□□□□□ -0.36
SKA1-204ENST00000488454 WWC3Q9ULE0 1092 aa12.82□□□□□ -0.36
SKA1-204ENST00000488454 BCS1LQ9Y276 419 aa12.82□□□□□ -0.36
SKA1-204ENST00000488454 RTL9Q8NET4 1388 aa12.81□□□□□ -0.36
SKA1-204ENST00000488454 PPEF1O14829 653 aaPredicted RBP12.81□□□□□ -0.36
SKA1-204ENST00000488454 PRPF40BQ6NWY9 871 aaKnown RBP12.81□□□□□ -0.36
SKA1-204ENST00000488454 TMC4Q7Z404 712 aa12.81□□□□□ -0.36
SKA1-204ENST00000488454 RPAP2Q8IXW5 612 aaPredicted RBP12.81□□□□□ -0.36
SKA1-204ENST00000488454 EXOC6Q8TAG9 804 aa12.81□□□□□ -0.36
SKA1-204ENST00000488454 LRP5O75197 1615 aa12.8□□□□□ -0.36
SKA1-204ENST00000488454 HMMRO75330 724 aa12.8□□□□□ -0.36
SKA1-204ENST00000488454 MTX1Q13505 466 aa12.8□□□□□ -0.36
SKA1-204ENST00000488454 GPR162Q16538 588 aa12.8□□□□□ -0.36
SKA1-204ENST00000488454 SOGA3Q5TF21 947 aa12.8□□□□□ -0.36
SKA1-204ENST00000488454 LDHAL6AQ6ZMR3 332 aa12.8□□□□□ -0.36
SKA1-204ENST00000488454 CELF1Q92879 486 aaKnown RBP12.8□□□□□ -0.36
SKA1-204ENST00000488454 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.8□□□□□ -0.36
SKA1-204ENST00000488454 SNPHO15079 494 aa12.79□□□□□ -0.36
SKA1-204ENST00000488454 C21orf2O43822 256 aa12.79□□□□□ -0.36
SKA1-204ENST00000488454 CC2D2BQ6DHV5 1058 aa12.79□□□□□ -0.36
SKA1-204ENST00000488454 CEP85Q6P2H3 762 aa12.79□□□□□ -0.36
SKA1-204ENST00000488454 SP8Q8IXZ3 490 aa12.79□□□□□ -0.36
SKA1-204ENST00000488454 FAM163AQ96GL9 167 aaPredicted RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms