RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 LRRC27Q9C0I9 530 aa18.82■□□□□ 0.6
COL7A1-210ENST00000487017 GSTTP1A0A1W2PQM5 241 aa18.82■□□□□ 0.6
COL7A1-210ENST00000487017 MTHFSDQ2M296 383 aaKnown RBP18.82■□□□□ 0.6
COL7A1-210ENST00000487017 COL17A1Q9UMD9 1497 aaPredicted RBP18.82■□□□□ 0.6
COL7A1-210ENST00000487017 CKAP4Q07065 602 aaKnown RBP18.82■□□□□ 0.6
COL7A1-210ENST00000487017 AKAP4Q5JQC9 854 aa18.82■□□□□ 0.6
COL7A1-210ENST00000487017 SPECC1Q5M775 1068 aa18.82■□□□□ 0.6
COL7A1-210ENST00000487017 SYT1P21579 422 aa18.82■□□□□ 0.6
COL7A1-210ENST00000487017 IL15P40933 162 aaPredicted RBP18.82■□□□□ 0.6
COL7A1-210ENST00000487017 CREB3L3Q68CJ9 461 aa18.82■□□□□ 0.6
COL7A1-210ENST00000487017 LDHCP07864 332 aa18.81■□□□□ 0.6
COL7A1-210ENST00000487017 AFMP43652 599 aa18.81■□□□□ 0.6
COL7A1-210ENST00000487017 SPAG1Q07617 926 aa18.81■□□□□ 0.6
COL7A1-210ENST00000487017 ZMYND15Q9H091 742 aa18.81■□□□□ 0.6
COL7A1-210ENST00000487017 EXOC1Q9NV70 894 aa18.81■□□□□ 0.6
COL7A1-210ENST00000487017 PA2G4Q9UQ80 394 aaKnown RBP18.81■□□□□ 0.6
COL7A1-210ENST00000487017 ZMYM4Q5VZL5 1548 aa18.81■□□□□ 0.6
COL7A1-210ENST00000487017 SMC1AQ14683 1233 aaKnown RBP18.81■□□□□ 0.6
COL7A1-210ENST00000487017 RTN1Q16799 776 aa18.81■□□□□ 0.6
COL7A1-210ENST00000487017 TAOK3Q9H2K8 898 aa18.81■□□□□ 0.6
COL7A1-210ENST00000487017 NPHP3Q7Z494 1330 aa18.81■□□□□ 0.6
COL7A1-210ENST00000487017 SRRTQ9BXP5 876 aaKnown RBP18.81■□□□□ 0.6
COL7A1-210ENST00000487017 ARFGAP3Q9NP61 516 aa18.81■□□□□ 0.6
COL7A1-210ENST00000487017 SPTLC2O15270 562 aa18.81■□□□□ 0.6
COL7A1-210ENST00000487017 SLU7O95391 586 aaKnown RBP18.81■□□□□ 0.6
COL7A1-210ENST00000487017 LIG1P18858 919 aa18.81■□□□□ 0.6
COL7A1-210ENST00000487017 TRIM21P19474 475 aaKnown RBP18.81■□□□□ 0.6
COL7A1-210ENST00000487017 MARCKSP29966 332 aaPredicted RBP18.81■□□□□ 0.6
COL7A1-210ENST00000487017 CTAGE15A4D2H0 777 aa18.8■□□□□ 0.6
COL7A1-210ENST00000487017 NBPF7P0C2Y1 421 aaPredicted RBP18.8■□□□□ 0.6
COL7A1-210ENST00000487017 CTAGE8P0CG41 777 aa18.8■□□□□ 0.6
COL7A1-210ENST00000487017 HMGB2P26583 209 aaKnown RBP18.8■□□□□ 0.6
COL7A1-210ENST00000487017 TCERG1LQ5VWI1 586 aa18.8■□□□□ 0.6
COL7A1-210ENST00000487017 RUFY3Q7L099 469 aa18.8■□□□□ 0.6
COL7A1-210ENST00000487017 CTAGE6Q86UF2 777 aa18.8■□□□□ 0.6
COL7A1-210ENST00000487017 CTAGE4Q8IX94 777 aa18.8■□□□□ 0.6
COL7A1-210ENST00000487017 KDM2BQ8NHM5 1336 aa18.8■□□□□ 0.6
COL7A1-210ENST00000487017 CEBPAP49715 358 aaPredicted RBP18.8■□□□□ 0.6
COL7A1-210ENST00000487017 CETN1Q12798 172 aa18.8■□□□□ 0.6
COL7A1-210ENST00000487017 BAG3O95817 575 aa18.8■□□□□ 0.6
COL7A1-210ENST00000487017 ATP2B3Q16720 1220 aa18.8■□□□□ 0.6
COL7A1-210ENST00000487017 LMBR1LQ6UX01 489 aa18.8■□□□□ 0.6
COL7A1-210ENST00000487017 EHMT1Q9H9B1 1298 aa18.8■□□□□ 0.6
COL7A1-210ENST00000487017 PAG1Q9NWQ8 432 aa18.8■□□□□ 0.6
COL7A1-210ENST00000487017 SOS1Q07889 1333 aaPredicted RBP18.8■□□□□ 0.6
COL7A1-210ENST00000487017 ZBTB7BO15156 539 aaPredicted RBP18.8■□□□□ 0.6
COL7A1-210ENST00000487017 CYLC1P35663 651 aaPredicted RBP18.8■□□□□ 0.6
COL7A1-210ENST00000487017 NOP2P46087 812 aaKnown RBP18.79■□□□□ 0.6
COL7A1-210ENST00000487017 MAATS1Q7Z4T9 603 aa18.79■□□□□ 0.6
COL7A1-210ENST00000487017 CRNKL1Q9BZJ0 848 aaKnown RBP18.79■□□□□ 0.6
COL7A1-210ENST00000487017 PRC1O43663 620 aa18.79■□□□□ 0.6
COL7A1-210ENST00000487017 AKR1B10O60218 316 aa18.79■□□□□ 0.6
COL7A1-210ENST00000487017 SPTY2D1Q68D10 685 aaPredicted RBP18.79■□□□□ 0.6
COL7A1-210ENST00000487017 SCLT1Q96NL6 688 aa18.79■□□□□ 0.6
COL7A1-210ENST00000487017 VAT1LQ9HCJ6 419 aa18.79■□□□□ 0.6
COL7A1-210ENST00000487017 RAD50Q92878 1312 aa18.79■□□□□ 0.6
COL7A1-210ENST00000487017 GOLGA6L10A0A0M3HER8 536 aa18.79■□□□□ 0.6
COL7A1-210ENST00000487017 HSP90AA4PQ58FG1 418 aa18.79■□□□□ 0.6
COL7A1-210ENST00000487017 LINS1Q8NG48 757 aa18.79■□□□□ 0.6
COL7A1-210ENST00000487017 CTNNBL1Q8WYA6 563 aaPredicted RBP18.79■□□□□ 0.6
COL7A1-210ENST00000487017 ESR2Q92731 530 aa18.79■□□□□ 0.6
COL7A1-210ENST00000487017 EXOC5O00471 708 aa18.79■□□□□ 0.6
COL7A1-210ENST00000487017 RPGRQ92834 1020 aaKnown RBP18.79■□□□□ 0.6
COL7A1-210ENST00000487017 A2MP01023 1474 aa18.79■□□□□ 0.6
COL7A1-210ENST00000487017 PTGS1P23219 599 aa18.78■□□□□ 0.6
COL7A1-210ENST00000487017 STAT6P42226 847 aa18.78■□□□□ 0.6
COL7A1-210ENST00000487017 PIP4K2BP78356 416 aa18.78■□□□□ 0.6
COL7A1-210ENST00000487017 PHACTR3Q96KR7 559 aa18.78■□□□□ 0.6
COL7A1-210ENST00000487017 ZRANB1Q9UGI0 708 aa18.78■□□□□ 0.6
COL7A1-210ENST00000487017 MSH6P52701 1360 aa18.78■□□□□ 0.6
COL7A1-210ENST00000487017 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.78■□□□□ 0.6
COL7A1-210ENST00000487017 FLT4P35916 1363 aa18.78■□□□□ 0.6
COL7A1-210ENST00000487017 IFIT1BQ5T764 474 aaKnown RBP18.78■□□□□ 0.6
COL7A1-210ENST00000487017 SLC4A4Q9Y6R1 1079 aa18.78■□□□□ 0.6
COL7A1-210ENST00000487017 TNRQ92752 1358 aa18.77■□□□□ 0.6
COL7A1-210ENST00000487017 CCDC175P0C221 793 aa18.77■□□□□ 0.6
COL7A1-210ENST00000487017 KRT24Q2M2I5 525 aa18.77■□□□□ 0.6
COL7A1-210ENST00000487017 ABCC1P33527 1531 aa18.77■□□□□ 0.6
COL7A1-210ENST00000487017 HSF2BPO75031 334 aa18.77■□□□□ 0.6
COL7A1-210ENST00000487017 IFI16Q16666 785 aaKnown RBP18.77■□□□□ 0.6
COL7A1-210ENST00000487017 PPP4R3AQ6IN85 833 aa18.77■□□□□ 0.6
COL7A1-210ENST00000487017 A0A1W2PP64 1363 aa18.77■□□□□ 0.6
COL7A1-210ENST00000487017 NPATQ14207 1427 aa18.77■□□□□ 0.59
COL7A1-210ENST00000487017 SHANK2Q9UPX8 1470 aa18.77■□□□□ 0.59
COL7A1-210ENST00000487017 MYO1BO43795 1136 aa18.77■□□□□ 0.59
COL7A1-210ENST00000487017 LMOD1P29536 600 aaPredicted RBP18.77■□□□□ 0.59
COL7A1-210ENST00000487017 STXBP4Q6ZWJ1 553 aa18.77■□□□□ 0.59
COL7A1-210ENST00000487017 PRPF4BQ13523 1007 aaKnown RBP18.76■□□□□ 0.59
COL7A1-210ENST00000487017 CCDC152Q4G0S7 254 aa18.76■□□□□ 0.59
COL7A1-210ENST00000487017 TIGD1Q96MW7 591 aa18.76■□□□□ 0.59
COL7A1-210ENST00000487017 CEP112Q8N8E3 955 aa18.76■□□□□ 0.59
COL7A1-210ENST00000487017 RNF113AO15541 343 aaKnown RBP18.76■□□□□ 0.59
COL7A1-210ENST00000487017 SLC39A6Q13433 755 aa18.76■□□□□ 0.59
COL7A1-210ENST00000487017 MACROD2A1Z1Q3 448 aa18.76■□□□□ 0.59
COL7A1-210ENST00000487017 PTPDC1A2A3K4 754 aa18.76■□□□□ 0.59
COL7A1-210ENST00000487017 APOBRQ0VD83 1088 aa18.76■□□□□ 0.59
COL7A1-210ENST00000487017 SLC9C2Q5TAH2 1124 aa18.76■□□□□ 0.59
COL7A1-210ENST00000487017 CYP7A1P22680 504 aa18.75■□□□□ 0.59
COL7A1-210ENST00000487017 MAP3K5Q99683 1374 aa18.75■□□□□ 0.59
COL7A1-210ENST00000487017 UHRF1BP1Q6BDS2 1440 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms