RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 UBAP1LF5GYI3 381 aa8.67□□□□□ -1.02
SMC4-218ENST00000486711 NAA30Q147X3 362 aaPredicted RBP8.67□□□□□ -1.02
SMC4-218ENST00000486711 SSBP4Q9BWG4 385 aaPredicted RBP8.67□□□□□ -1.02
SMC4-218ENST00000486711 SERPINA10Q9UK55 444 aa8.67□□□□□ -1.02
SMC4-218ENST00000486711 FNDC3AQ9Y2H6 1198 aaKnown RBP8.67□□□□□ -1.02
SMC4-218ENST00000486711 SCO2A0A1W2PP80 73 aa8.66□□□□□ -1.02
SMC4-218ENST00000486711 ARID3CA6NKF2 412 aa8.66□□□□□ -1.02
SMC4-218ENST00000486711 DEAF1O75398 565 aaPredicted RBP8.66□□□□□ -1.02
SMC4-218ENST00000486711 ZAP70P43403 619 aa8.66□□□□□ -1.02
SMC4-218ENST00000486711 FAM26DQ5JW98 314 aa8.66□□□□□ -1.02
SMC4-218ENST00000486711 GDF6Q6KF10 455 aaPredicted RBP8.66□□□□□ -1.02
SMC4-218ENST00000486711 CAPN12Q6ZSI9 719 aa8.66□□□□□ -1.02
SMC4-218ENST00000486711 ABTB2Q8N961 1025 aa8.66□□□□□ -1.02
SMC4-218ENST00000486711 DCAF11Q8TEB1 546 aa8.66□□□□□ -1.02
SMC4-218ENST00000486711 WFDC12Q8WWY7 111 aa8.66□□□□□ -1.02
SMC4-218ENST00000486711 SRA1Q9HD15 236 aaKnown RBP8.66□□□□□ -1.02
SMC4-218ENST00000486711 CACTIN-AS1Q8N1I8 211 aa8.65□□□□□ -1.02
SMC4-218ENST00000486711 OR13H1Q8NG92 308 aa8.65□□□□□ -1.02
SMC4-218ENST00000486711 ARID3AQ99856 593 aa8.65□□□□□ -1.02
SMC4-218ENST00000486711 STIM2Q9P246 746 aa8.65□□□□□ -1.02
SMC4-218ENST00000486711 DLL1O00548 723 aa8.64□□□□□ -1.03
SMC4-218ENST00000486711 NOS3P29474 1203 aa8.64□□□□□ -1.03
SMC4-218ENST00000486711 IREB2P48200 963 aaKnown RBP8.64□□□□□ -1.03
SMC4-218ENST00000486711 FOXD4L6Q3SYB3 417 aaPredicted RBP8.64□□□□□ -1.03
SMC4-218ENST00000486711 FOXD4L3Q6VB84 417 aaPredicted RBP8.64□□□□□ -1.03
SMC4-218ENST00000486711 MAP4K3Q8IVH8 894 aa8.64□□□□□ -1.03
SMC4-218ENST00000486711 IL22RA1Q8N6P7 574 aa8.64□□□□□ -1.03
SMC4-218ENST00000486711 MUC3BQ9H195 1237 aa8.63□□□□□ -1.03
SMC4-218ENST00000486711 ATP2B4P23634 1241 aa8.62□□□□□ -1.03
SMC4-218ENST00000486711 HYAL2Q12891 473 aa8.62□□□□□ -1.03
SMC4-218ENST00000486711 TTC39BQ5VTQ0 682 aaPredicted RBP8.62□□□□□ -1.03
SMC4-218ENST00000486711 GPR152Q8TDT2 470 aa8.62□□□□□ -1.03
SMC4-218ENST00000486711 SPACA7Q96KW9 195 aa8.62□□□□□ -1.03
SMC4-218ENST00000486711 MRPL18Q9H0U6 180 aaKnown RBP8.62□□□□□ -1.03
SMC4-218ENST00000486711 TRIM33Q9UPN9 1127 aa8.62□□□□□ -1.03
SMC4-218ENST00000486711 AKTIPQ9H8T0 292 aa8.61□□□□□ -1.03
SMC4-218ENST00000486711 ARTNQ5T4W7 220 aa8.6□□□□□ -1.03
SMC4-218ENST00000486711 MEGF10Q96KG7 1140 aa8.6□□□□□ -1.03
SMC4-218ENST00000486711 C1orf115Q9H7X2 142 aa8.6□□□□□ -1.03
SMC4-218ENST00000486711 ABI2Q9NYB9 513 aaPredicted RBP8.6□□□□□ -1.03
SMC4-218ENST00000486711 SLAIN2Q9P270 581 aa8.6□□□□□ -1.03
SMC4-218ENST00000486711 SMNDC1O75940 238 aaKnown RBP eCLIP8.59□□□□□ -1.03
SMC4-218ENST00000486711 SCNN1AP37088 669 aa8.59□□□□□ -1.03
SMC4-218ENST00000486711 SETDB1Q15047 1291 aa8.59□□□□□ -1.03
SMC4-218ENST00000486711 TMEM130Q8N3G9 435 aa8.59□□□□□ -1.03
SMC4-218ENST00000486711 ZFP64Q9NPA5 681 aa8.59□□□□□ -1.03
SMC4-218ENST00000486711 PPME1Q9Y570 386 aa8.59□□□□□ -1.03
SMC4-218ENST00000486711 ZBTB39O15060 712 aa8.58□□□□□ -1.04
SMC4-218ENST00000486711 KIF4AO95239 1232 aa8.58□□□□□ -1.04
SMC4-218ENST00000486711 COL13A1Q5TAT6 717 aaPredicted RBP8.58□□□□□ -1.04
SMC4-218ENST00000486711 PDE12Q6L8Q7 609 aaKnown RBP8.58□□□□□ -1.04
SMC4-218ENST00000486711 SEPT3Q9UH03 358 aa8.58□□□□□ -1.04
SMC4-218ENST00000486711 F8W735 103 aaPredicted RBP8.57□□□□□ -1.04
SMC4-218ENST00000486711 RPLP1P05386 114 aaKnown RBP8.57□□□□□ -1.04
SMC4-218ENST00000486711 ATP11AP98196 1134 aa8.57□□□□□ -1.04
SMC4-218ENST00000486711 CEP135Q66GS9 1140 aa8.57□□□□□ -1.04
SMC4-218ENST00000486711 DZIP1LQ8IYY4 767 aaKnown RBP8.57□□□□□ -1.04
SMC4-218ENST00000486711 CCDC82Q8N4S0 544 aa8.57□□□□□ -1.04
SMC4-218ENST00000486711 LRP8Q14114 963 aa8.56□□□□□ -1.04
SMC4-218ENST00000486711 PRR23CQ6ZRP0 262 aa8.56□□□□□ -1.04
SMC4-218ENST00000486711 HELQQ8TDG4 1101 aa8.56□□□□□ -1.04
SMC4-218ENST00000486711 NUDT16Q96DE0 195 aaKnown RBP8.56□□□□□ -1.04
SMC4-218ENST00000486711 CDC27P30260 824 aa8.55□□□□□ -1.04
SMC4-218ENST00000486711 ZNF438Q7Z4V0 828 aa8.55□□□□□ -1.04
SMC4-218ENST00000486711 LACRTQ9GZZ8 138 aa8.55□□□□□ -1.04
SMC4-218ENST00000486711 RASSF4Q9H2L5 321 aa8.55□□□□□ -1.04
SMC4-218ENST00000486711 ELP3Q9H9T3 547 aa8.55□□□□□ -1.04
SMC4-218ENST00000486711 LINC01387J3KSC0 135 aa8.54□□□□□ -1.04
SMC4-218ENST00000486711 ALX3O95076 343 aa8.54□□□□□ -1.04
SMC4-218ENST00000486711 PCSK2P16519 638 aa8.54□□□□□ -1.04
SMC4-218ENST00000486711 Q6ZS46 218 aa8.54□□□□□ -1.04
SMC4-218ENST00000486711 NCAPG2Q86XI2 1143 aa8.54□□□□□ -1.04
SMC4-218ENST00000486711 FAM177BA6PVY3 158 aa8.53□□□□□ -1.04
SMC4-218ENST00000486711 CYP2E1P05181 493 aaPredicted RBP8.53□□□□□ -1.04
SMC4-218ENST00000486711 FAM117BQ6P1L5 589 aa8.53□□□□□ -1.04
SMC4-218ENST00000486711 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.53□□□□□ -1.04
SMC4-218ENST00000486711 NBPF11Q86T75 865 aa8.53□□□□□ -1.04
SMC4-218ENST00000486711 ATCAYQ86WG3 371 aa8.53□□□□□ -1.04
SMC4-218ENST00000486711 PBX4Q9BYU1 374 aa8.53□□□□□ -1.04
SMC4-218ENST00000486711 TMEM63CQ9P1W3 806 aa8.53□□□□□ -1.04
SMC4-218ENST00000486711 GLB1P16278 677 aa8.52□□□□□ -1.05
SMC4-218ENST00000486711 PTPRAP18433 802 aa8.52□□□□□ -1.05
SMC4-218ENST00000486711 NOM1Q5C9Z4 860 aaKnown RBP8.52□□□□□ -1.05
SMC4-218ENST00000486711 CEP120Q8N960 986 aa8.52□□□□□ -1.05
SMC4-218ENST00000486711 GALNT11Q8NCW6 608 aa8.52□□□□□ -1.05
SMC4-218ENST00000486711 EDEM1Q92611 657 aa8.52□□□□□ -1.05
SMC4-218ENST00000486711 CD68P34810 354 aaPredicted RBP8.51□□□□□ -1.05
SMC4-218ENST00000486711 TXNDC11Q6PKC3 985 aa8.51□□□□□ -1.05
SMC4-218ENST00000486711 XKR5Q6UX68 686 aa8.51□□□□□ -1.05
SMC4-218ENST00000486711 SLC51AQ86UW1 340 aa8.51□□□□□ -1.05
SMC4-218ENST00000486711 AGGF1Q8N302 714 aaeCLIP8.51□□□□□ -1.05
SMC4-218ENST00000486711 TTC16Q8NEE8 873 aa8.51□□□□□ -1.05
SMC4-218ENST00000486711 RNF112Q9ULX5 631 aa8.51□□□□□ -1.05
SMC4-218ENST00000486711 PPP1R15AO75807 674 aaPredicted RBP8.5□□□□□ -1.05
SMC4-218ENST00000486711 DNM1Q05193 864 aaKnown RBP8.5□□□□□ -1.05
SMC4-218ENST00000486711 KLHL23Q8NBE8 558 aa8.5□□□□□ -1.05
SMC4-218ENST00000486711 KANSL3Q9P2N6 904 aa8.5□□□□□ -1.05
SMC4-218ENST00000486711 FSCN2O14926 492 aa8.49□□□□□ -1.05
SMC4-218ENST00000486711 HYAL3O43820 417 aaPredicted RBP8.49□□□□□ -1.05
SMC4-218ENST00000486711 PDGFAP04085 211 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms