RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 DNAJC5GQ8N7S2 189 aa22.4■■□□□ 1.18
COL6A1-204ENST00000486023 C9orf78Q9NZ63 289 aaPredicted RBP22.4■■□□□ 1.18
COL6A1-204ENST00000486023 ECE2O60344 883 aa22.39■■□□□ 1.17
COL6A1-204ENST00000486023 ITGA6P23229 1130 aa22.39■■□□□ 1.17
COL6A1-204ENST00000486023 IGHMBP2P38935 993 aaKnown RBP22.39■■□□□ 1.17
COL6A1-204ENST00000486023 CASP7P55210 303 aa22.39■■□□□ 1.17
COL6A1-204ENST00000486023 FAM161AQ3B820 660 aa22.39■■□□□ 1.17
COL6A1-204ENST00000486023 SSH1Q8WYL5 1049 aa22.39■■□□□ 1.17
COL6A1-204ENST00000486023 KCNQ5Q9NR82 932 aa22.39■■□□□ 1.17
COL6A1-204ENST00000486023 ZBTB12Q9Y330 459 aaPredicted RBP22.39■■□□□ 1.17
COL6A1-204ENST00000486023 MPHOSPH8Q99549 860 aa22.38■■□□□ 1.17
COL6A1-204ENST00000486023 SRCIN1Q9C0H9 1055 aa22.38■■□□□ 1.17
COL6A1-204ENST00000486023 PODXL2Q9NZ53 605 aa22.38■■□□□ 1.17
COL6A1-204ENST00000486023 GPRC5DQ9NZD1 345 aa22.38■■□□□ 1.17
COL6A1-204ENST00000486023 XDHP47989 1333 aa22.37■■□□□ 1.17
COL6A1-204ENST00000486023 WTIPA6NIX2 430 aaPredicted RBP22.37■■□□□ 1.17
COL6A1-204ENST00000486023 CNTROBQ8N137 903 aa22.37■■□□□ 1.17
COL6A1-204ENST00000486023 PLA2G12BQ9BX93 195 aa22.37■■□□□ 1.17
COL6A1-204ENST00000486023 BSDC1Q9NW68 430 aaPredicted RBP22.37■■□□□ 1.17
COL6A1-204ENST00000486023 MINPP1Q9UNW1 487 aa22.37■■□□□ 1.17
COL6A1-204ENST00000486023 GRM8O00222 908 aa22.36■■□□□ 1.17
COL6A1-204ENST00000486023 PSMD14O00487 310 aa22.36■■□□□ 1.17
COL6A1-204ENST00000486023 ATP2B4P23634 1241 aa22.36■■□□□ 1.17
COL6A1-204ENST00000486023 DUOX1Q9NRD9 1551 aa22.35■■□□□ 1.17
COL6A1-204ENST00000486023 ANKRD18BA2A2Z9 1011 aa22.35■■□□□ 1.17
COL6A1-204ENST00000486023 CSF1RP07333 972 aa22.35■■□□□ 1.17
COL6A1-204ENST00000486023 USP50Q70EL3 339 aaPredicted RBP22.35■■□□□ 1.17
COL6A1-204ENST00000486023 KLRG1Q96E93 195 aa22.35■■□□□ 1.17
COL6A1-204ENST00000486023 ADARB2Q9NS39 739 aaKnown RBP22.35■■□□□ 1.17
COL6A1-204ENST00000486023 SMC4Q9NTJ3 1288 aa22.35■■□□□ 1.17
COL6A1-204ENST00000486023 CNOT7Q9UIV1 285 aaKnown RBP22.35■■□□□ 1.17
COL6A1-204ENST00000486023 SCN4AP35499 1836 aa22.34■■□□□ 1.17
COL6A1-204ENST00000486023 SHTN1A0MZ66 631 aa22.34■■□□□ 1.17
COL6A1-204ENST00000486023 ALDH1L1O75891 902 aa22.34■■□□□ 1.17
COL6A1-204ENST00000486023 FOXO4P98177 505 aa22.34■■□□□ 1.17
COL6A1-204ENST00000486023 LMBR1LQ6UX01 489 aa22.34■■□□□ 1.17
COL6A1-204ENST00000486023 H7C1D1 291 aa22.33■■□□□ 1.17
COL6A1-204ENST00000486023 ITGBL1O95965 494 aaPredicted RBP22.33■■□□□ 1.17
COL6A1-204ENST00000486023 IFIT5Q13325 482 aaKnown RBP22.33■■□□□ 1.17
COL6A1-204ENST00000486023 TAF7LQ5H9L4 462 aa22.33■■□□□ 1.17
COL6A1-204ENST00000486023 EPHA10Q5JZY3 1008 aa22.33■■□□□ 1.17
COL6A1-204ENST00000486023 RBM26Q5T8P6 1007 aaKnown RBP22.33■■□□□ 1.17
COL6A1-204ENST00000486023 KCNJ4P48050 445 aa22.32■■□□□ 1.16
COL6A1-204ENST00000486023 CCT4P50991 539 aaKnown RBP22.32■■□□□ 1.16
COL6A1-204ENST00000486023 MICALL2Q8IY33 904 aa22.32■■□□□ 1.16
COL6A1-204ENST00000486023 RTL9Q8NET4 1388 aa22.32■■□□□ 1.16
COL6A1-204ENST00000486023 LRRC37AA6NMS7 1700 aa22.31■■□□□ 1.16
COL6A1-204ENST00000486023 TRMT2AQ8IZ69 625 aaKnown RBP22.31■■□□□ 1.16
COL6A1-204ENST00000486023 FBXW7Q969H0 707 aa22.31■■□□□ 1.16
COL6A1-204ENST00000486023 ZNF594Q96JF6 807 aaPredicted RBP22.31■■□□□ 1.16
COL6A1-204ENST00000486023 MKRN1Q9UHC7 482 aaKnown RBP22.31■■□□□ 1.16
COL6A1-204ENST00000486023 PTPRCP08575 1304 aa22.31■■□□□ 1.16
COL6A1-204ENST00000486023 FMR1Q06787 632 aaKnown RBP eCLIP22.3■■□□□ 1.16
COL6A1-204ENST00000486023 CCDC57Q2TAC2 916 aa22.3■■□□□ 1.16
COL6A1-204ENST00000486023 HELBQ8NG08 1087 aaPredicted RBP22.3■■□□□ 1.16
COL6A1-204ENST00000486023 SUCLG2Q96I99 432 aa22.3■■□□□ 1.16
COL6A1-204ENST00000486023 ANKRD2Q9GZV1 360 aa22.3■■□□□ 1.16
COL6A1-204ENST00000486023 PASKQ96RG2 1323 aa22.3■■□□□ 1.16
COL6A1-204ENST00000486023 LTBP1Q14766 1721 aa22.29■■□□□ 1.16
COL6A1-204ENST00000486023 PLIN1O60240 522 aa22.29■■□□□ 1.16
COL6A1-204ENST00000486023 TAF5LO75529 589 aa22.29■■□□□ 1.16
COL6A1-204ENST00000486023 NBPF7P0C2Y1 421 aaPredicted RBP22.29■■□□□ 1.16
COL6A1-204ENST00000486023 ALDH1L2Q3SY69 923 aa22.29■■□□□ 1.16
COL6A1-204ENST00000486023 TBC1D10BQ4KMP7 808 aaPredicted RBP22.29■■□□□ 1.16
COL6A1-204ENST00000486023 SAMD7Q7Z3H4 446 aa22.29■■□□□ 1.16
COL6A1-204ENST00000486023 TRPM4Q8TD43 1214 aa22.29■■□□□ 1.16
COL6A1-204ENST00000486023 CREBZFQ9NS37 354 aa22.29■■□□□ 1.16
COL6A1-204ENST00000486023 TMEM88BA6NKF7 163 aa22.28■■□□□ 1.16
COL6A1-204ENST00000486023 TRAF5O00463 557 aa22.28■■□□□ 1.16
COL6A1-204ENST00000486023 CHRNDQ07001 517 aa22.28■■□□□ 1.16
COL6A1-204ENST00000486023 CACNA1FO60840 1977 aa22.27■■□□□ 1.16
COL6A1-204ENST00000486023 SNAP23O00161 211 aa22.27■■□□□ 1.16
COL6A1-204ENST00000486023 HIRAP54198 1017 aaPredicted RBP22.27■■□□□ 1.16
COL6A1-204ENST00000486023 HNRNPUQ00839 825 aaKnown RBP eCLIP22.27■■□□□ 1.16
COL6A1-204ENST00000486023 DPF2Q92785 391 aa22.27■■□□□ 1.16
COL6A1-204ENST00000486023 CNNM1Q9NRU3 951 aa22.27■■□□□ 1.16
COL6A1-204ENST00000486023 NOB1Q9ULX3 412 aaKnown RBP22.27■■□□□ 1.16
COL6A1-204ENST00000486023 LEMD3Q9Y2U8 911 aa22.27■■□□□ 1.16
COL6A1-204ENST00000486023 ZNF804BA4D1E1 1349 aa22.27■■□□□ 1.16
COL6A1-204ENST00000486023 KLRK1P26718 216 aa22.26■■□□□ 1.15
COL6A1-204ENST00000486023 LDHAL6AQ6ZMR3 332 aa22.26■■□□□ 1.15
COL6A1-204ENST00000486023 TXNRD3Q86VQ6 643 aa22.26■■□□□ 1.15
COL6A1-204ENST00000486023 VIL1P09327 827 aaKnown RBP22.25■■□□□ 1.15
COL6A1-204ENST00000486023 RPS12P25398 132 aaKnown RBP22.25■■□□□ 1.15
COL6A1-204ENST00000486023 PODNQ7Z5L7 613 aa22.25■■□□□ 1.15
COL6A1-204ENST00000486023 ABT1Q9ULW3 272 aaKnown RBP22.25■■□□□ 1.15
COL6A1-204ENST00000486023 EGFRP00533 1210 aa22.24■■□□□ 1.15
COL6A1-204ENST00000486023 RSBN1LQ6PCB5 846 aaPredicted RBP22.24■■□□□ 1.15
COL6A1-204ENST00000486023 MXD3Q9BW11 206 aa22.24■■□□□ 1.15
COL6A1-204ENST00000486023 GLIS2Q9BZE0 524 aaPredicted RBP22.24■■□□□ 1.15
COL6A1-204ENST00000486023 BICC1Q9H694 974 aaKnown RBP22.24■■□□□ 1.15
COL6A1-204ENST00000486023 ZNF408Q9H9D4 720 aa22.24■■□□□ 1.15
COL6A1-204ENST00000486023 USP17L3A6NCW0 530 aa22.23■■□□□ 1.15
COL6A1-204ENST00000486023 USP17L4A6NCW7 530 aa22.23■■□□□ 1.15
COL6A1-204ENST00000486023 CT47B1P0C2W7 299 aaPredicted RBP22.23■■□□□ 1.15
COL6A1-204ENST00000486023 USP17L1Q7RTZ2 530 aa22.23■■□□□ 1.15
COL6A1-204ENST00000486023 KAZALD1Q96I82 304 aa22.23■■□□□ 1.15
COL6A1-204ENST00000486023 MED23Q9ULK4 1368 aa22.23■■□□□ 1.15
COL6A1-204ENST00000486023 MYH3P11055 1940 aa22.22■■□□□ 1.15
COL6A1-204ENST00000486023 PAXIP1Q6ZW49 1069 aaPredicted RBP22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms