RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.76□□□□□ -1.17
VPS41-213ENST00000485955 SERPINB4P48594 390 aa7.75□□□□□ -1.17
VPS41-213ENST00000485955 TRIM28Q13263 835 aaKnown RBP7.75□□□□□ -1.17
VPS41-213ENST00000485955 GRIK4Q16099 956 aa7.75□□□□□ -1.17
VPS41-213ENST00000485955 TTC39BQ5VTQ0 682 aaPredicted RBP7.75□□□□□ -1.17
VPS41-213ENST00000485955 TTC9Q92623 222 aa7.75□□□□□ -1.17
VPS41-213ENST00000485955 CNTN3Q9P232 1028 aa7.75□□□□□ -1.17
VPS41-213ENST00000485955 POLIQ9UNA4 740 aa7.75□□□□□ -1.17
VPS41-213ENST00000485955 A0A0A0MRY4 1105 aa7.74□□□□□ -1.17
VPS41-213ENST00000485955 SPDYE3A6NKU9 549 aa7.74□□□□□ -1.17
VPS41-213ENST00000485955 MZF1P28698 734 aaPredicted RBP7.74□□□□□ -1.17
VPS41-213ENST00000485955 ECM1Q16610 540 aa7.74□□□□□ -1.17
VPS41-213ENST00000485955 PRRT3Q5FWE3 981 aa7.74□□□□□ -1.17
VPS41-213ENST00000485955 MSL1Q68DK7 614 aa7.74□□□□□ -1.17
VPS41-213ENST00000485955 PDE12Q6L8Q7 609 aaKnown RBP7.74□□□□□ -1.17
VPS41-213ENST00000485955 PLD4Q96BZ4 506 aa7.74□□□□□ -1.17
VPS41-213ENST00000485955 ABI2Q9NYB9 513 aaPredicted RBP7.74□□□□□ -1.17
VPS41-213ENST00000485955 MTMR7Q9Y216 660 aa7.74□□□□□ -1.17
VPS41-213ENST00000485955 FZD6O60353 706 aa7.73□□□□□ -1.17
VPS41-213ENST00000485955 FAM13AO94988 1023 aa7.73□□□□□ -1.17
VPS41-213ENST00000485955 SF3B2Q13435 895 aaKnown RBP7.73□□□□□ -1.17
VPS41-213ENST00000485955 AAMPQ13685 434 aa7.73□□□□□ -1.17
VPS41-213ENST00000485955 C8orf34Q49A92 452 aa7.73□□□□□ -1.17
VPS41-213ENST00000485955 ALKBH2Q6NS38 261 aa7.73□□□□□ -1.17
VPS41-213ENST00000485955 XKR5Q6UX68 686 aa7.73□□□□□ -1.17
VPS41-213ENST00000485955 ZNF438Q7Z4V0 828 aa7.73□□□□□ -1.17
VPS41-213ENST00000485955 CCDC87Q9NVE4 849 aa7.73□□□□□ -1.17
VPS41-213ENST00000485955 GHRHP01286 108 aa7.72□□□□□ -1.17
VPS41-213ENST00000485955 BAG6P46379 1132 aa7.72□□□□□ -1.17
VPS41-213ENST00000485955 C1orf127Q8N9H9 656 aa7.72□□□□□ -1.17
VPS41-213ENST00000485955 ICMTO60725 284 aa7.71□□□□□ -1.18
VPS41-213ENST00000485955 GDF6Q6KF10 455 aaPredicted RBP7.71□□□□□ -1.18
VPS41-213ENST00000485955 B4GALNT3Q6L9W6 998 aa7.71□□□□□ -1.18
VPS41-213ENST00000485955 ADAMTSL4Q6UY14 1074 aa7.71□□□□□ -1.18
VPS41-213ENST00000485955 TXNDC2Q86VQ3 553 aa7.71□□□□□ -1.18
VPS41-213ENST00000485955 TRIM33Q9UPN9 1127 aa7.71□□□□□ -1.18
VPS41-213ENST00000485955 KIF4AO95239 1232 aa7.7□□□□□ -1.18
VPS41-213ENST00000485955 RPLP1P05386 114 aaKnown RBP7.7□□□□□ -1.18
VPS41-213ENST00000485955 SELPP16109 830 aa7.7□□□□□ -1.18
VPS41-213ENST00000485955 PCSK2P16519 638 aa7.7□□□□□ -1.18
VPS41-213ENST00000485955 ATP11AP98196 1134 aa7.7□□□□□ -1.18
VPS41-213ENST00000485955 HYAL2Q12891 473 aa7.7□□□□□ -1.18
VPS41-213ENST00000485955 SHISA2Q6UWI4 295 aa7.7□□□□□ -1.18
VPS41-213ENST00000485955 WFDC8Q8IUA0 241 aa7.7□□□□□ -1.18
VPS41-213ENST00000485955 FMR1NBQ8N0W7 255 aaPredicted RBP7.7□□□□□ -1.18
VPS41-213ENST00000485955 CEP120Q8N960 986 aa7.7□□□□□ -1.18
VPS41-213ENST00000485955 KANSL3Q9P2N6 904 aa7.7□□□□□ -1.18
VPS41-213ENST00000485955 EGFL7Q9UHF1 273 aa7.7□□□□□ -1.18
VPS41-213ENST00000485955 ELNP15502 786 aa7.69□□□□□ -1.18
VPS41-213ENST00000485955 SUZ12Q15022 739 aaKnown RBP7.69□□□□□ -1.18
VPS41-213ENST00000485955 IL22RA1Q8N6P7 574 aa7.69□□□□□ -1.18
VPS41-213ENST00000485955 RASSF4Q9H2L5 321 aa7.69□□□□□ -1.18
VPS41-213ENST00000485955 CHRDQ9H2X0 955 aa7.69□□□□□ -1.18
VPS41-213ENST00000485955 SALL4Q9UJQ4 1053 aa7.69□□□□□ -1.18
VPS41-213ENST00000485955 H3BRB1 525 aa7.68□□□□□ -1.18
VPS41-213ENST00000485955 DEAF1O75398 565 aaPredicted RBP7.68□□□□□ -1.18
VPS41-213ENST00000485955 APBA3O96018 575 aa7.68□□□□□ -1.18
VPS41-213ENST00000485955 RAC1P63000 192 aa7.68□□□□□ -1.18
VPS41-213ENST00000485955 ARHGAP4P98171 946 aa7.68□□□□□ -1.18
VPS41-213ENST00000485955 RBSNQ9H1K0 784 aa7.68□□□□□ -1.18
VPS41-213ENST00000485955 TUT1Q9H6E5 874 aaKnown RBP7.68□□□□□ -1.18
VPS41-213ENST00000485955 TNFRSF21O75509 655 aa7.67□□□□□ -1.18
VPS41-213ENST00000485955 ACPPP15309 386 aa7.67□□□□□ -1.18
VPS41-213ENST00000485955 CEP135Q66GS9 1140 aa7.67□□□□□ -1.18
VPS41-213ENST00000485955 NCAPG2Q86XI2 1143 aa7.67□□□□□ -1.18
VPS41-213ENST00000485955 FBXO11Q86XK2 927 aa7.67□□□□□ -1.18
VPS41-213ENST00000485955 GJD3Q8N144 294 aa7.67□□□□□ -1.18
VPS41-213ENST00000485955 TTC16Q8NEE8 873 aa7.67□□□□□ -1.18
VPS41-213ENST00000485955 SPACA7Q96KW9 195 aa7.67□□□□□ -1.18
VPS41-213ENST00000485955 TRPA1O75762 1119 aa7.66□□□□□ -1.18
VPS41-213ENST00000485955 CES1P23141 567 aa7.66□□□□□ -1.18
VPS41-213ENST00000485955 PDE4CQ08493 712 aa7.66□□□□□ -1.18
VPS41-213ENST00000485955 GLYCTKQ8IVS8 523 aa7.66□□□□□ -1.18
VPS41-213ENST00000485955 DTWD1Q8N5C7 304 aa7.66□□□□□ -1.18
VPS41-213ENST00000485955 PBX4Q9BYU1 374 aa7.66□□□□□ -1.18
VPS41-213ENST00000485955 LACRTQ9GZZ8 138 aa7.66□□□□□ -1.18
VPS41-213ENST00000485955 FOXD3Q9UJU5 478 aaPredicted RBP7.66□□□□□ -1.18
VPS41-213ENST00000485955 NFKBIEO00221 500 aa7.65□□□□□ -1.18
VPS41-213ENST00000485955 EREGO14944 169 aa7.65□□□□□ -1.18
VPS41-213ENST00000485955 FURINP09958 794 aa7.65□□□□□ -1.18
VPS41-213ENST00000485955 GATA4P43694 442 aa7.65□□□□□ -1.18
VPS41-213ENST00000485955 USP5P45974 858 aa7.65□□□□□ -1.18
VPS41-213ENST00000485955 DOC2BQ14184 412 aa7.65□□□□□ -1.18
VPS41-213ENST00000485955 LENG1Q96BZ8 264 aaPredicted RBP7.65□□□□□ -1.18
VPS41-213ENST00000485955 POP1Q99575 1024 aaKnown RBP7.65□□□□□ -1.18
VPS41-213ENST00000485955 C9orf172C9J069 976 aa7.64□□□□□ -1.19
VPS41-213ENST00000485955 ADGRE1Q14246 886 aa7.64□□□□□ -1.19
VPS41-213ENST00000485955 SETDB1Q15047 1291 aa7.64□□□□□ -1.19
VPS41-213ENST00000485955 HHIPQ96QV1 700 aa7.64□□□□□ -1.19
VPS41-213ENST00000485955 NACC1Q96RE7 527 aa7.64□□□□□ -1.19
VPS41-213ENST00000485955 DLL1O00548 723 aa7.63□□□□□ -1.19
VPS41-213ENST00000485955 SMNDC1O75940 238 aaKnown RBP eCLIP7.63□□□□□ -1.19
VPS41-213ENST00000485955 EHHADHQ08426 723 aa7.63□□□□□ -1.19
VPS41-213ENST00000485955 MBTPS1Q14703 1052 aa7.63□□□□□ -1.19
VPS41-213ENST00000485955 TXNDC11Q6PKC3 985 aa7.63□□□□□ -1.19
VPS41-213ENST00000485955 SH2B1Q9NRF2 756 aaPredicted RBP7.63□□□□□ -1.19
VPS41-213ENST00000485955 DZANK1Q9NVP4 752 aa7.63□□□□□ -1.19
VPS41-213ENST00000485955 PPME1Q9Y570 386 aa7.63□□□□□ -1.19
VPS41-213ENST00000485955 LINC01387J3KSC0 135 aa7.62□□□□□ -1.19
VPS41-213ENST00000485955 PHACTR2O75167 634 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms