RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 HYPKQ9NX55 129 aa7.41□□□□□ -1.22
CUX1-208ENST00000485792 PIM2Q9P1W9 311 aa7.41□□□□□ -1.22
CUX1-208ENST00000485792 NIP7Q9Y221 180 aaKnown RBP eCLIP7.41□□□□□ -1.22
CUX1-208ENST00000485792 RNF123Q5XPI4 1314 aa7.41□□□□□ -1.22
CUX1-208ENST00000485792 CEP350Q5VT06 3117 aa7.4□□□□□ -1.22
CUX1-208ENST00000485792 TESPA1A2RU30 521 aaPredicted RBP7.4□□□□□ -1.22
CUX1-208ENST00000485792 TBC1D12O60347 775 aa7.4□□□□□ -1.22
CUX1-208ENST00000485792 SLFN5Q08AF3 891 aa7.4□□□□□ -1.22
CUX1-208ENST00000485792 AIMP1Q12904 312 aaKnown RBP7.4□□□□□ -1.22
CUX1-208ENST00000485792 TCIRG1Q13488 830 aa7.4□□□□□ -1.22
CUX1-208ENST00000485792 TWISTNBQ3B726 338 aaPredicted RBP7.4□□□□□ -1.22
CUX1-208ENST00000485792 PARP10Q53GL7 1025 aa7.4□□□□□ -1.22
CUX1-208ENST00000485792 DIEXFQ68CQ4 756 aaKnown RBP7.4□□□□□ -1.22
CUX1-208ENST00000485792 TPTE2Q6XPS3 522 aa7.4□□□□□ -1.22
CUX1-208ENST00000485792 CNBD1Q8NA66 436 aa7.4□□□□□ -1.22
CUX1-208ENST00000485792 ZNF784Q8NCA9 323 aaPredicted RBP7.4□□□□□ -1.22
CUX1-208ENST00000485792 CHMP4AQ9BY43 222 aa7.4□□□□□ -1.22
CUX1-208ENST00000485792 PCNTO95613 3336 aa7.4□□□□□ -1.23
CUX1-208ENST00000485792 ARAP2Q8WZ64 1704 aa7.39□□□□□ -1.23
CUX1-208ENST00000485792 WTIPA6NIX2 430 aaPredicted RBP7.39□□□□□ -1.23
CUX1-208ENST00000485792 ATP5J2-PTCD1G3V325 749 aa7.39□□□□□ -1.23
CUX1-208ENST00000485792 PDE6BP35913 854 aa7.39□□□□□ -1.23
CUX1-208ENST00000485792 GPR162Q16538 588 aa7.39□□□□□ -1.23
CUX1-208ENST00000485792 CCDC30Q5VVM6 783 aa7.39□□□□□ -1.23
CUX1-208ENST00000485792 STYK1Q6J9G0 422 aa7.39□□□□□ -1.23
CUX1-208ENST00000485792 PRPF40BQ6NWY9 871 aaKnown RBP7.39□□□□□ -1.23
CUX1-208ENST00000485792 ANKRD13DQ6ZTN6 518 aa7.39□□□□□ -1.23
CUX1-208ENST00000485792 C2CD5Q86YS7 1000 aa7.39□□□□□ -1.23
CUX1-208ENST00000485792 KHSRPQ92945 711 aaKnown RBP eCLIP7.39□□□□□ -1.23
CUX1-208ENST00000485792 BCS1LQ9Y276 419 aa7.39□□□□□ -1.23
CUX1-208ENST00000485792 ABCC4O15439 1325 aa7.38□□□□□ -1.23
CUX1-208ENST00000485792 LTBP3Q9NS15 1303 aa7.38□□□□□ -1.23
CUX1-208ENST00000485792 F6X3S4 739 aa7.38□□□□□ -1.23
CUX1-208ENST00000485792 EVI5O60447 810 aa7.38□□□□□ -1.23
CUX1-208ENST00000485792 NUDT7P0C024 238 aa7.38□□□□□ -1.23
CUX1-208ENST00000485792 HCLS1P14317 486 aaPredicted RBP7.38□□□□□ -1.23
CUX1-208ENST00000485792 CWF19L2Q2TBE0 894 aaKnown RBP7.38□□□□□ -1.23
CUX1-208ENST00000485792 HSP90AB3PQ58FF7 597 aa7.38□□□□□ -1.23
CUX1-208ENST00000485792 DALRD3Q5D0E6 543 aaKnown RBP7.38□□□□□ -1.23
CUX1-208ENST00000485792 VARS2Q5ST30 1063 aaKnown RBP7.38□□□□□ -1.23
CUX1-208ENST00000485792 KIF6Q6ZMV9 814 aa7.38□□□□□ -1.23
CUX1-208ENST00000485792 NPM2Q86SE8 214 aaKnown RBP7.38□□□□□ -1.23
CUX1-208ENST00000485792 TTLL6Q8N841 843 aa7.38□□□□□ -1.23
CUX1-208ENST00000485792 MASTLQ96GX5 879 aa7.38□□□□□ -1.23
CUX1-208ENST00000485792 KAZALD1Q96I82 304 aa7.38□□□□□ -1.23
CUX1-208ENST00000485792 NYXQ9GZU5 481 aa7.38□□□□□ -1.23
CUX1-208ENST00000485792 ZNF541Q9H0D2 1346 aa7.37□□□□□ -1.23
CUX1-208ENST00000485792 POTECB2RU33 542 aa7.37□□□□□ -1.23
CUX1-208ENST00000485792 H0YIN7 160 aa7.37□□□□□ -1.23
CUX1-208ENST00000485792 BRPF1P55201 1214 aaPredicted RBP7.37□□□□□ -1.23
CUX1-208ENST00000485792 EPHA10Q5JZY3 1008 aa7.37□□□□□ -1.23
CUX1-208ENST00000485792 NBPF5PQ86XG9 351 aaPredicted RBP7.37□□□□□ -1.23
CUX1-208ENST00000485792 FAM89AQ96GI7 184 aa7.37□□□□□ -1.23
CUX1-208ENST00000485792 BCL2L13Q9BXK5 485 aa7.37□□□□□ -1.23
CUX1-208ENST00000485792 IRS2Q9Y4H2 1338 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 PI4KAP2A4QPH2 592 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 E9PSI1 815 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 C21orf2O43822 256 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 NPR1P16066 1061 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 YY1P25490 414 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 ST5P78524 1137 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 FLIIQ13045 1269 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 RTL5Q5HYW3 569 aaPredicted RBP7.36□□□□□ -1.23
CUX1-208ENST00000485792 KSR2Q6VAB6 950 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 PPP1R42Q7Z4L9 355 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 MRPL50Q8N5N7 158 aaKnown RBP7.36□□□□□ -1.23
CUX1-208ENST00000485792 PI4KAP1Q8N8J0 262 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 SSH1Q8WYL5 1049 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 CELF1Q92879 486 aaKnown RBP7.36□□□□□ -1.23
CUX1-208ENST00000485792 CRAMP1Q96RY5 1269 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 MYD88Q99836 296 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 METTL22Q9BUU2 404 aaPredicted RBP7.36□□□□□ -1.23
CUX1-208ENST00000485792 MYH16Q9H6N6 1097 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 MAP3K2Q9Y2U5 619 aa7.36□□□□□ -1.23
CUX1-208ENST00000485792 ZC3H4Q9UPT8 1303 aaKnown RBP7.35□□□□□ -1.23
CUX1-208ENST00000485792 NEURL1BA8MQ27 555 aa7.35□□□□□ -1.23
CUX1-208ENST00000485792 ALDH1B1P30837 517 aa7.35□□□□□ -1.23
CUX1-208ENST00000485792 MLLT3P42568 568 aaPredicted RBP7.35□□□□□ -1.23
CUX1-208ENST00000485792 SF3B3Q15393 1217 aaKnown RBP7.35□□□□□ -1.23
CUX1-208ENST00000485792 CCDC191Q8NCU4 936 aa7.35□□□□□ -1.23
CUX1-208ENST00000485792 CNKSR1Q969H4 720 aa7.35□□□□□ -1.23
CUX1-208ENST00000485792 GPR101Q96P66 508 aaPredicted RBP7.35□□□□□ -1.23
CUX1-208ENST00000485792 UTP14AQ9BVJ6 771 aaKnown RBP7.35□□□□□ -1.23
CUX1-208ENST00000485792 SEC31BQ9NQW1 1179 aa7.35□□□□□ -1.23
CUX1-208ENST00000485792 PAPPA2Q9BXP8 1791 aa7.35□□□□□ -1.23
CUX1-208ENST00000485792 TRPM7Q96QT4 1865 aa7.34□□□□□ -1.23
CUX1-208ENST00000485792 SH3TC1Q8TE82 1336 aa7.34□□□□□ -1.23
CUX1-208ENST00000485792 CDHR2Q9BYE9 1310 aa7.34□□□□□ -1.23
CUX1-208ENST00000485792 POTEB3A0JP26 581 aa7.34□□□□□ -1.23
CUX1-208ENST00000485792 TULP1O00294 542 aaPredicted RBP7.34□□□□□ -1.23
CUX1-208ENST00000485792 PCCAP05165 728 aaPredicted RBP7.34□□□□□ -1.23
CUX1-208ENST00000485792 BEND3Q5T5X7 828 aa7.34□□□□□ -1.23
CUX1-208ENST00000485792 C9orf131Q5VYM1 1079 aa7.34□□□□□ -1.23
CUX1-208ENST00000485792 POTEBQ6S5H4 581 aa7.34□□□□□ -1.23
CUX1-208ENST00000485792 ZBTB38Q8NAP3 1195 aaPredicted RBP7.34□□□□□ -1.23
CUX1-208ENST00000485792 NMRK2Q9NPI5 230 aa7.34□□□□□ -1.23
CUX1-208ENST00000485792 MYH13Q9UKX3 1938 aa7.34□□□□□ -1.23
CUX1-208ENST00000485792 ECM29Q5VYK3 1845 aa7.34□□□□□ -1.24
CUX1-208ENST00000485792 RTL9Q8NET4 1388 aa7.33□□□□□ -1.24
CUX1-208ENST00000485792 COL1A1P02452 1464 aaPredicted RBP7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms