RNA–Protein interactions for RNA: ENST00000483925.1

PTCD3-214, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-214ENST00000483925 MRRFQ96E11 262 aaKnown RBP6.75□□□□□ -1.33
PTCD3-214ENST00000483925 IFT43Q96FT9 208 aa6.75□□□□□ -1.33
PTCD3-214ENST00000483925 SSBP4Q9BWG4 385 aaPredicted RBP6.75□□□□□ -1.33
PTCD3-214ENST00000483925 QTRT2Q9H974 415 aaKnown RBP6.75□□□□□ -1.33
PTCD3-214ENST00000483925 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.75□□□□□ -1.33
PTCD3-214ENST00000483925 RARAP10276 462 aa6.74□□□□□ -1.33
PTCD3-214ENST00000483925 GPLD1P80108 840 aa6.74□□□□□ -1.33
PTCD3-214ENST00000483925 WFDC12Q8WWY7 111 aa6.74□□□□□ -1.33
PTCD3-214ENST00000483925 MYO19Q96H55 970 aa6.74□□□□□ -1.33
PTCD3-214ENST00000483925 MLLT1Q03111 559 aaPredicted RBP6.73□□□□□ -1.33
PTCD3-214ENST00000483925 LRP8Q14114 963 aa6.73□□□□□ -1.33
PTCD3-214ENST00000483925 IGF2-ASQ6U949 168 aa6.73□□□□□ -1.33
PTCD3-214ENST00000483925 EIF5BO60841 1220 aaKnown RBP6.72□□□□□ -1.33
PTCD3-214ENST00000483925 IREB2P48200 963 aaKnown RBP6.72□□□□□ -1.33
PTCD3-214ENST00000483925 NRLP54845 237 aa6.72□□□□□ -1.33
PTCD3-214ENST00000483925 PLAURQ03405 335 aa6.72□□□□□ -1.33
PTCD3-214ENST00000483925 TXNDC2Q86VQ3 553 aa6.72□□□□□ -1.33
PTCD3-214ENST00000483925 SMG9Q9H0W8 520 aaKnown RBP6.72□□□□□ -1.33
PTCD3-214ENST00000483925 KIAA1522Q9P206 1035 aaPredicted RBP6.72□□□□□ -1.33
PTCD3-214ENST00000483925 RTCBQ9Y3I0 505 aaKnown RBP6.72□□□□□ -1.33
PTCD3-214ENST00000483925 OPLAHO14841 1288 aa6.71□□□□□ -1.34
PTCD3-214ENST00000483925 EGFRP00533 1210 aa6.71□□□□□ -1.34
PTCD3-214ENST00000483925 NOS3P29474 1203 aa6.71□□□□□ -1.34
PTCD3-214ENST00000483925 ELOAQ14241 798 aaKnown RBP6.71□□□□□ -1.34
PTCD3-214ENST00000483925 CDCA8Q53HL2 280 aa6.71□□□□□ -1.34
PTCD3-214ENST00000483925 HFE2Q6ZVN8 426 aa6.71□□□□□ -1.34
PTCD3-214ENST00000483925 FAM200AQ8TCP9 573 aa6.71□□□□□ -1.34
PTCD3-214ENST00000483925 DRC1Q96MC2 740 aa6.71□□□□□ -1.34
PTCD3-214ENST00000483925 KRTAP9-2Q9BYQ4 174 aa6.71□□□□□ -1.34
PTCD3-214ENST00000483925 TLR7Q9NYK1 1049 aaKnown RBP6.71□□□□□ -1.34
PTCD3-214ENST00000483925 HYAL3O43820 417 aaPredicted RBP6.7□□□□□ -1.34
PTCD3-214ENST00000483925 XYLBO75191 536 aa6.7□□□□□ -1.34
PTCD3-214ENST00000483925 EIF2AK2P19525 551 aaKnown RBP6.7□□□□□ -1.34
PTCD3-214ENST00000483925 CMTR1Q8N1G2 835 aaKnown RBP6.7□□□□□ -1.34
PTCD3-214ENST00000483925 LOC102724428A0A0B4J2F2 783 aa6.69□□□□□ -1.34
PTCD3-214ENST00000483925 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.69□□□□□ -1.34
PTCD3-214ENST00000483925 DEAF1O75398 565 aaPredicted RBP6.69□□□□□ -1.34
PTCD3-214ENST00000483925 PSAPP07602 524 aa6.69□□□□□ -1.34
PTCD3-214ENST00000483925 TCF3P15923 654 aa6.69□□□□□ -1.34
PTCD3-214ENST00000483925 ZNF16P17020 682 aaPredicted RBP6.69□□□□□ -1.34
PTCD3-214ENST00000483925 SIK1P57059 783 aa6.69□□□□□ -1.34
PTCD3-214ENST00000483925 DNAJC14Q6Y2X3 702 aaPredicted RBP6.69□□□□□ -1.34
PTCD3-214ENST00000483925 C8orf37Q96NL8 207 aa6.69□□□□□ -1.34
PTCD3-214ENST00000483925 BCL2L13Q9BXK5 485 aa6.69□□□□□ -1.34
PTCD3-214ENST00000483925 LRFN2Q9ULH4 789 aa6.69□□□□□ -1.34
PTCD3-214ENST00000483925 USP20Q9Y2K6 914 aa6.69□□□□□ -1.34
PTCD3-214ENST00000483925 DLL1O00548 723 aa6.68□□□□□ -1.34
PTCD3-214ENST00000483925 TREML1Q86YW5 311 aa6.68□□□□□ -1.34
PTCD3-214ENST00000483925 RGL4Q8IZJ4 473 aa6.68□□□□□ -1.34
PTCD3-214ENST00000483925 PLD4Q96BZ4 506 aa6.68□□□□□ -1.34
PTCD3-214ENST00000483925 MEGF10Q96KG7 1140 aa6.68□□□□□ -1.34
PTCD3-214ENST00000483925 J3QW42 95 aa6.67□□□□□ -1.34
PTCD3-214ENST00000483925 ZNF326Q5BKZ1 582 aaKnown RBP6.67□□□□□ -1.34
PTCD3-214ENST00000483925 SREK1Q8WXA9 508 aaKnown RBP6.67□□□□□ -1.34
PTCD3-214ENST00000483925 RBSNQ9H1K0 784 aa6.67□□□□□ -1.34
PTCD3-214ENST00000483925 AKTIPQ9H8T0 292 aa6.67□□□□□ -1.34
PTCD3-214ENST00000483925 RNF112Q9ULX5 631 aa6.67□□□□□ -1.34
PTCD3-214ENST00000483925 KRTAP9-6A0A140TA67 174 aa6.66□□□□□ -1.34
PTCD3-214ENST00000483925 MMP20O60882 483 aa6.66□□□□□ -1.34
PTCD3-214ENST00000483925 GHRHP01286 108 aa6.66□□□□□ -1.34
PTCD3-214ENST00000483925 SOX18P35713 384 aa6.66□□□□□ -1.34
PTCD3-214ENST00000483925 COX20Q5RI15 118 aa6.66□□□□□ -1.34
PTCD3-214ENST00000483925 GDF6Q6KF10 455 aaPredicted RBP6.66□□□□□ -1.34
PTCD3-214ENST00000483925 PRR23CQ6ZRP0 262 aa6.66□□□□□ -1.34
PTCD3-214ENST00000483925 TMEM130Q8N3G9 435 aa6.66□□□□□ -1.34
PTCD3-214ENST00000483925 DCAF11Q8TEB1 546 aa6.66□□□□□ -1.34
PTCD3-214ENST00000483925 MRPL18Q9H0U6 180 aaKnown RBP6.66□□□□□ -1.34
PTCD3-214ENST00000483925 SRA1Q9HD15 236 aaKnown RBP6.66□□□□□ -1.34
PTCD3-214ENST00000483925 KCNMB2Q9Y691 235 aa6.66□□□□□ -1.34
PTCD3-214ENST00000483925 PPM1GO15355 546 aaPredicted RBP6.65□□□□□ -1.34
PTCD3-214ENST00000483925 HOXD8P13378 290 aaPredicted RBP6.65□□□□□ -1.34
PTCD3-214ENST00000483925 FKBP5Q13451 457 aaPredicted RBP6.65□□□□□ -1.34
PTCD3-214ENST00000483925 SLC51AQ86UW1 340 aa6.65□□□□□ -1.34
PTCD3-214ENST00000483925 MAP4K3Q8IVH8 894 aa6.65□□□□□ -1.34
PTCD3-214ENST00000483925 DZIP1LQ8IYY4 767 aaKnown RBP6.65□□□□□ -1.34
PTCD3-214ENST00000483925 IL22RA1Q8N6P7 574 aa6.65□□□□□ -1.34
PTCD3-214ENST00000483925 NSUN5Q96P11 429 aaKnown RBP6.65□□□□□ -1.34
PTCD3-214ENST00000483925 BCL11AQ9H165 835 aa6.65□□□□□ -1.34
PTCD3-214ENST00000483925 VAMP1P23763 118 aa6.64□□□□□ -1.35
PTCD3-214ENST00000483925 SWI5Q1ZZU3 235 aa6.64□□□□□ -1.35
PTCD3-214ENST00000483925 TMEM164Q5U3C3 297 aa6.64□□□□□ -1.35
PTCD3-214ENST00000483925 CACTIN-AS1Q8N1I8 211 aa6.64□□□□□ -1.35
PTCD3-214ENST00000483925 GIPC2Q8TF65 315 aa6.64□□□□□ -1.35
PTCD3-214ENST00000483925 PRIMPOLQ96LW4 560 aa6.64□□□□□ -1.35
PTCD3-214ENST00000483925 NOVA2Q9UNW9 492 aaKnown RBP6.64□□□□□ -1.35
PTCD3-214ENST00000483925 SOWAHDA6NJG2 315 aa6.63□□□□□ -1.35
PTCD3-214ENST00000483925 F8W735 103 aaPredicted RBP6.63□□□□□ -1.35
PTCD3-214ENST00000483925 ALX3O95076 343 aa6.63□□□□□ -1.35
PTCD3-214ENST00000483925 BRD2P25440 801 aaKnown RBP6.63□□□□□ -1.35
PTCD3-214ENST00000483925 SETDB1Q15047 1291 aa6.63□□□□□ -1.35
PTCD3-214ENST00000483925 NLRP13Q86W25 1043 aa6.63□□□□□ -1.35
PTCD3-214ENST00000483925 MUC3BQ9H195 1237 aa6.63□□□□□ -1.35
PTCD3-214ENST00000483925 NCLP19338 710 aaKnown RBP6.62□□□□□ -1.35
PTCD3-214ENST00000483925 SSFA2P28290 1259 aa6.62□□□□□ -1.35
PTCD3-214ENST00000483925 ZC3H6P61129 1189 aaKnown RBP6.62□□□□□ -1.35
PTCD3-214ENST00000483925 SF3A1Q15459 793 aaKnown RBP6.62□□□□□ -1.35
PTCD3-214ENST00000483925 PHLDB3Q6NSJ2 640 aa6.62□□□□□ -1.35
PTCD3-214ENST00000483925 ETFBKMTQ8IXQ9 262 aa6.62□□□□□ -1.35
PTCD3-214ENST00000483925 SPATA32Q96LK8 384 aa6.62□□□□□ -1.35
PTCD3-214ENST00000483925 CHMP4AQ9BY43 222 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms