RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 TRIM28Q13263 835 aaKnown RBP8.88□□□□□ -0.99
PTCD3-211ENST00000476215 PDE12Q6L8Q7 609 aaKnown RBP8.88□□□□□ -0.99
PTCD3-211ENST00000476215 DTWD1Q8N5C7 304 aa8.88□□□□□ -0.99
PTCD3-211ENST00000476215 ELNP15502 786 aa8.87□□□□□ -0.99
PTCD3-211ENST00000476215 BAG6P46379 1132 aa8.87□□□□□ -0.99
PTCD3-211ENST00000476215 MSL1Q68DK7 614 aa8.87□□□□□ -0.99
PTCD3-211ENST00000476215 XKR5Q6UX68 686 aa8.87□□□□□ -0.99
PTCD3-211ENST00000476215 GPR152Q8TDT2 470 aa8.87□□□□□ -0.99
PTCD3-211ENST00000476215 BIN2Q9UBW5 565 aaPredicted RBP8.87□□□□□ -0.99
PTCD3-211ENST00000476215 LOC102724428A0A0B4J2F2 783 aa8.86□□□□□ -0.99
PTCD3-211ENST00000476215 FAM13AO94988 1023 aa8.86□□□□□ -0.99
PTCD3-211ENST00000476215 RPLP1P05386 114 aaKnown RBP8.86□□□□□ -0.99
PTCD3-211ENST00000476215 MPSTP25325 297 aa8.86□□□□□ -0.99
PTCD3-211ENST00000476215 SIK1P57059 783 aa8.86□□□□□ -0.99
PTCD3-211ENST00000476215 MLLT1Q03111 559 aaPredicted RBP8.86□□□□□ -0.99
PTCD3-211ENST00000476215 SUZ12Q15022 739 aaKnown RBP8.86□□□□□ -0.99
PTCD3-211ENST00000476215 ELMSAN1Q6PJG2 1045 aa8.86□□□□□ -0.99
PTCD3-211ENST00000476215 NACC1Q96RE7 527 aa8.86□□□□□ -0.99
PTCD3-211ENST00000476215 FAM229AH3BQW9 127 aa8.85□□□□□ -0.99
PTCD3-211ENST00000476215 KIF4AO95239 1232 aa8.85□□□□□ -0.99
PTCD3-211ENST00000476215 NOM1Q5C9Z4 860 aaKnown RBP8.85□□□□□ -0.99
PTCD3-211ENST00000476215 TRAPPC3LQ5T215 181 aa8.85□□□□□ -0.99
PTCD3-211ENST00000476215 SND1Q7KZF4 910 aaKnown RBP eCLIP8.85□□□□□ -0.99
PTCD3-211ENST00000476215 FMR1NBQ8N0W7 255 aaPredicted RBP8.85□□□□□ -0.99
PTCD3-211ENST00000476215 MZF1P28698 734 aaPredicted RBP8.84□□□□□ -0.99
PTCD3-211ENST00000476215 RAC1P63000 192 aa8.84□□□□□ -0.99
PTCD3-211ENST00000476215 AAMPQ13685 434 aa8.84□□□□□ -0.99
PTCD3-211ENST00000476215 ATCAYQ86WG3 371 aa8.84□□□□□ -0.99
PTCD3-211ENST00000476215 NUDT16Q96DE0 195 aaKnown RBP8.84□□□□□ -0.99
PTCD3-211ENST00000476215 SMG9Q9H0W8 520 aaKnown RBP8.84□□□□□ -0.99
PTCD3-211ENST00000476215 ADAM23O75077 832 aa8.83□□□□□ -1
PTCD3-211ENST00000476215 APBA3O96018 575 aa8.83□□□□□ -1
PTCD3-211ENST00000476215 PDGFAP04085 211 aa8.83□□□□□ -1
PTCD3-211ENST00000476215 SELPP16109 830 aa8.83□□□□□ -1
PTCD3-211ENST00000476215 EIF2AK2P19525 551 aaKnown RBP8.83□□□□□ -1
PTCD3-211ENST00000476215 EIF1AXP47813 144 aaKnown RBP8.83□□□□□ -1
PTCD3-211ENST00000476215 ALKBH2Q6NS38 261 aa8.83□□□□□ -1
PTCD3-211ENST00000476215 CACTIN-AS1Q8N1I8 211 aa8.83□□□□□ -1
PTCD3-211ENST00000476215 PLD4Q96BZ4 506 aa8.83□□□□□ -1
PTCD3-211ENST00000476215 LENG1Q96BZ8 264 aaPredicted RBP8.83□□□□□ -1
PTCD3-211ENST00000476215 ABI2Q9NYB9 513 aaPredicted RBP8.83□□□□□ -1
PTCD3-211ENST00000476215 C9orf172C9J069 976 aa8.82□□□□□ -1
PTCD3-211ENST00000476215 J3QW42 95 aa8.82□□□□□ -1
PTCD3-211ENST00000476215 ADGRE1Q14246 886 aa8.82□□□□□ -1
PTCD3-211ENST00000476215 COL13A1Q5TAT6 717 aaPredicted RBP8.82□□□□□ -1
PTCD3-211ENST00000476215 TMCO4Q5TGY1 634 aa8.82□□□□□ -1
PTCD3-211ENST00000476215 HFE2Q6ZVN8 426 aa8.82□□□□□ -1
PTCD3-211ENST00000476215 FBXO11Q86XK2 927 aa8.82□□□□□ -1
PTCD3-211ENST00000476215 DMRTC2Q8IXT2 367 aaPredicted RBP8.82□□□□□ -1
PTCD3-211ENST00000476215 EDEM1Q92611 657 aa8.82□□□□□ -1
PTCD3-211ENST00000476215 NSUN5Q96P11 429 aaKnown RBP8.82□□□□□ -1
PTCD3-211ENST00000476215 GHRHP01286 108 aa8.81□□□□□ -1
PTCD3-211ENST00000476215 GATA4P43694 442 aa8.81□□□□□ -1
PTCD3-211ENST00000476215 ARHGAP4P98171 946 aa8.81□□□□□ -1
PTCD3-211ENST00000476215 HYAL2Q12891 473 aa8.81□□□□□ -1
PTCD3-211ENST00000476215 GRIK4Q16099 956 aa8.81□□□□□ -1
PTCD3-211ENST00000476215 ECM1Q16610 540 aa8.81□□□□□ -1
PTCD3-211ENST00000476215 WFDC8Q8IUA0 241 aa8.81□□□□□ -1
PTCD3-211ENST00000476215 ELP3Q9H9T3 547 aa8.81□□□□□ -1
PTCD3-211ENST00000476215 PODXL2Q9NZ53 605 aa8.81□□□□□ -1
PTCD3-211ENST00000476215 TTC39BQ5VTQ0 682 aaPredicted RBP8.8□□□□□ -1
PTCD3-211ENST00000476215 RBSNQ9H1K0 784 aa8.8□□□□□ -1
PTCD3-211ENST00000476215 SRA1Q9HD15 236 aaKnown RBP8.8□□□□□ -1
PTCD3-211ENST00000476215 TMEM63CQ9P1W3 806 aa8.8□□□□□ -1
PTCD3-211ENST00000476215 MBTPS1Q14703 1052 aa8.79□□□□□ -1
PTCD3-211ENST00000476215 GGNBP2Q9H3C7 697 aa8.79□□□□□ -1
PTCD3-211ENST00000476215 LOC100996750A0A140TA64 210 aa8.78□□□□□ -1
PTCD3-211ENST00000476215 FZD6O60353 706 aa8.78□□□□□ -1
PTCD3-211ENST00000476215 DEAF1O75398 565 aaPredicted RBP8.78□□□□□ -1
PTCD3-211ENST00000476215 PCSK2P16519 638 aa8.78□□□□□ -1
PTCD3-211ENST00000476215 NRG1Q02297 640 aaPredicted RBP8.78□□□□□ -1
PTCD3-211ENST00000476215 DNM1Q05193 864 aaKnown RBP8.78□□□□□ -1
PTCD3-211ENST00000476215 CCDC27Q2M243 656 aa8.78□□□□□ -1
PTCD3-211ENST00000476215 CEP120Q8N960 986 aa8.78□□□□□ -1
PTCD3-211ENST00000476215 KRTAP4-6Q9BYQ5 205 aa8.78□□□□□ -1
PTCD3-211ENST00000476215 SALL4Q9UJQ4 1053 aa8.78□□□□□ -1
PTCD3-211ENST00000476215 K7ELQ4 463 aaPredicted RBP8.77□□□□□ -1.01
PTCD3-211ENST00000476215 DLL1O00548 723 aa8.77□□□□□ -1.01
PTCD3-211ENST00000476215 CYP2E1P05181 493 aaPredicted RBP8.77□□□□□ -1.01
PTCD3-211ENST00000476215 USP5P45974 858 aa8.77□□□□□ -1.01
PTCD3-211ENST00000476215 ZNF438Q7Z4V0 828 aa8.77□□□□□ -1.01
PTCD3-211ENST00000476215 MAP4K3Q8IVH8 894 aa8.77□□□□□ -1.01
PTCD3-211ENST00000476215 CCDC87Q9NVE4 849 aa8.77□□□□□ -1.01
PTCD3-211ENST00000476215 CNTN3Q9P232 1028 aa8.77□□□□□ -1.01
PTCD3-211ENST00000476215 BRPF3Q9ULD4 1205 aa8.77□□□□□ -1.01
PTCD3-211ENST00000476215 NDUFB5O43674 189 aa8.76□□□□□ -1.01
PTCD3-211ENST00000476215 GJD3Q8N144 294 aa8.76□□□□□ -1.01
PTCD3-211ENST00000476215 SSBP4Q9BWG4 385 aaPredicted RBP8.76□□□□□ -1.01
PTCD3-211ENST00000476215 MUC3BQ9H195 1237 aa8.76□□□□□ -1.01
PTCD3-211ENST00000476215 CHRDQ9H2X0 955 aa8.76□□□□□ -1.01
PTCD3-211ENST00000476215 POLIQ9UNA4 740 aa8.76□□□□□ -1.01
PTCD3-211ENST00000476215 TM4SF5O14894 197 aa8.75□□□□□ -1.01
PTCD3-211ENST00000476215 MAPK1P28482 360 aa8.75□□□□□ -1.01
PTCD3-211ENST00000476215 EHHADHQ08426 723 aa8.75□□□□□ -1.01
PTCD3-211ENST00000476215 NKAPLQ5M9Q1 402 aa8.75□□□□□ -1.01
PTCD3-211ENST00000476215 IGF2-ASQ6U949 168 aa8.75□□□□□ -1.01
PTCD3-211ENST00000476215 SHISA2Q6UWI4 295 aa8.75□□□□□ -1.01
PTCD3-211ENST00000476215 TXNRD3Q86VQ6 643 aa8.75□□□□□ -1.01
PTCD3-211ENST00000476215 TPSG1Q9NRR2 321 aa8.75□□□□□ -1.01
PTCD3-211ENST00000476215 DCTN4Q9UJW0 460 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 198.9 ms