RNA–Protein interactions for RNA: ENST00000475540.1

SMC5-203, Transcript of structural maintenance of chromosomes 5, humanhuman

TSL 3

Gene SMC5, Length 688 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-203ENST00000475540 NDUFB5O43674 189 aa11.9□□□□□ -0.5
SMC5-203ENST00000475540 HOXD8P13378 290 aaPredicted RBP11.9□□□□□ -0.5
SMC5-203ENST00000475540 EIF2AK2P19525 551 aaKnown RBP11.9□□□□□ -0.5
SMC5-203ENST00000475540 HYAL2Q12891 473 aa11.9□□□□□ -0.5
SMC5-203ENST00000475540 FRRS1LQ9P0K9 344 aa11.9□□□□□ -0.5
SMC5-203ENST00000475540 BIN2Q9UBW5 565 aaPredicted RBP11.9□□□□□ -0.5
SMC5-203ENST00000475540 IVNS1ABPQ9Y6Y0 642 aa11.9□□□□□ -0.5
SMC5-203ENST00000475540 RASSF7Q02833 373 aa11.89□□□□□ -0.51
SMC5-203ENST00000475540 PERM1Q5SV97 790 aa11.89□□□□□ -0.51
SMC5-203ENST00000475540 PMEPA1Q969W9 287 aa11.89□□□□□ -0.51
SMC5-203ENST00000475540 SPACA7Q96KW9 195 aa11.89□□□□□ -0.51
SMC5-203ENST00000475540 NOP53Q9NZM5 478 aaKnown RBP11.89□□□□□ -0.51
SMC5-203ENST00000475540 GJD3Q8N144 294 aa11.88□□□□□ -0.51
SMC5-203ENST00000475540 PLVAPQ9BX97 442 aa11.88□□□□□ -0.51
SMC5-203ENST00000475540 CNTN3Q9P232 1028 aa11.88□□□□□ -0.51
SMC5-203ENST00000475540 CITED4Q96RK1 184 aa11.87□□□□□ -0.51
SMC5-203ENST00000475540 LPIN3Q9BQK8 851 aa11.87□□□□□ -0.51
SMC5-203ENST00000475540 SMG9Q9H0W8 520 aaKnown RBP11.87□□□□□ -0.51
SMC5-203ENST00000475540 SPDYE3A6NKU9 549 aa11.86□□□□□ -0.51
SMC5-203ENST00000475540 GDF11O95390 407 aa11.86□□□□□ -0.51
SMC5-203ENST00000475540 CYP2E1P05181 493 aaPredicted RBP11.86□□□□□ -0.51
SMC5-203ENST00000475540 CES1P23141 567 aa11.86□□□□□ -0.51
SMC5-203ENST00000475540 PDE3BQ13370 1112 aa11.86□□□□□ -0.51
SMC5-203ENST00000475540 AEBP1Q8IUX7 1158 aa11.86□□□□□ -0.51
SMC5-203ENST00000475540 TMEM151AQ8N4L1 468 aa11.86□□□□□ -0.51
SMC5-203ENST00000475540 C1orf127Q8N9H9 656 aa11.86□□□□□ -0.51
SMC5-203ENST00000475540 TTC9Q92623 222 aa11.86□□□□□ -0.51
SMC5-203ENST00000475540 SUV39H2Q9H5I1 410 aa11.86□□□□□ -0.51
SMC5-203ENST00000475540 AFF1P51825 1210 aaKnown RBP11.85□□□□□ -0.51
SMC5-203ENST00000475540 NCAPG2Q86XI2 1143 aa11.85□□□□□ -0.51
SMC5-203ENST00000475540 TMC1Q8TDI8 760 aa11.85□□□□□ -0.51
SMC5-203ENST00000475540 PLD4Q96BZ4 506 aa11.85□□□□□ -0.51
SMC5-203ENST00000475540 TRIM11Q96F44 468 aa11.85□□□□□ -0.51
SMC5-203ENST00000475540 TNFRSF21O75509 655 aa11.84□□□□□ -0.51
SMC5-203ENST00000475540 GSK3AP49840 483 aa11.84□□□□□ -0.51
SMC5-203ENST00000475540 COL9A3Q14050 684 aaPredicted RBP11.84□□□□□ -0.51
SMC5-203ENST00000475540 COL13A1Q5TAT6 717 aaPredicted RBP11.84□□□□□ -0.51
SMC5-203ENST00000475540 ALYREFQ86V81 257 aaKnown RBP11.84□□□□□ -0.51
SMC5-203ENST00000475540 KCTD17Q8N5Z5 321 aa11.84□□□□□ -0.51
SMC5-203ENST00000475540 PHACTR2O75167 634 aa11.83□□□□□ -0.52
SMC5-203ENST00000475540 NID1P14543 1247 aa11.83□□□□□ -0.52
SMC5-203ENST00000475540 TRAPPC3LQ5T215 181 aa11.83□□□□□ -0.52
SMC5-203ENST00000475540 SNX29Q8TEQ0 813 aa11.83□□□□□ -0.52
SMC5-203ENST00000475540 KANSL3Q9P2N6 904 aa11.83□□□□□ -0.52
SMC5-203ENST00000475540 KIF4AO95239 1232 aa11.82□□□□□ -0.52
SMC5-203ENST00000475540 NEFLP07196 543 aa11.82□□□□□ -0.52
SMC5-203ENST00000475540 COL8A1P27658 744 aa11.81□□□□□ -0.52
SMC5-203ENST00000475540 SALL4Q9UJQ4 1053 aa11.81□□□□□ -0.52
SMC5-203ENST00000475540 FOXD3Q9UJU5 478 aaPredicted RBP11.81□□□□□ -0.52
SMC5-203ENST00000475540 TRIM28Q13263 835 aaKnown RBP11.8□□□□□ -0.52
SMC5-203ENST00000475540 PRRT3Q5FWE3 981 aa11.8□□□□□ -0.52
SMC5-203ENST00000475540 DCAF5Q96JK2 942 aa11.8□□□□□ -0.52
SMC5-203ENST00000475540 CHRDQ9H2X0 955 aa11.8□□□□□ -0.52
SMC5-203ENST00000475540 GRIK5Q16478 980 aa11.79□□□□□ -0.52
SMC5-203ENST00000475540 MSL1Q68DK7 614 aa11.79□□□□□ -0.52
SMC5-203ENST00000475540 DMRTC2Q8IXT2 367 aaPredicted RBP11.79□□□□□ -0.52
SMC5-203ENST00000475540 CEP120Q8N960 986 aa11.79□□□□□ -0.52
SMC5-203ENST00000475540 FAM129BQ96TA1 746 aa11.79□□□□□ -0.52
SMC5-203ENST00000475540 DCTN4Q9UJW0 460 aa11.79□□□□□ -0.52
SMC5-203ENST00000475540 EREGO14944 169 aa11.78□□□□□ -0.52
SMC5-203ENST00000475540 SMNDC1O75940 238 aaKnown RBP eCLIP11.78□□□□□ -0.52
SMC5-203ENST00000475540 CEP135Q66GS9 1140 aa11.78□□□□□ -0.52
SMC5-203ENST00000475540 GDF6Q6KF10 455 aaPredicted RBP11.78□□□□□ -0.52
SMC5-203ENST00000475540 WFDC8Q8IUA0 241 aa11.78□□□□□ -0.52
SMC5-203ENST00000475540 RBCK1Q9BYM8 510 aa11.78□□□□□ -0.52
SMC5-203ENST00000475540 ZFYVE28Q9HCC9 887 aa11.78□□□□□ -0.52
SMC5-203ENST00000475540 CACTIN-AS1Q8N1I8 211 aa11.77□□□□□ -0.53
SMC5-203ENST00000475540 RASSF4Q9H2L5 321 aa11.77□□□□□ -0.53
SMC5-203ENST00000475540 AMOTL2Q9Y2J4 779 aa11.77□□□□□ -0.53
SMC5-203ENST00000475540 MAPK1P28482 360 aa11.76□□□□□ -0.53
SMC5-203ENST00000475540 RAC1P63000 192 aa11.76□□□□□ -0.53
SMC5-203ENST00000475540 ATP11AP98196 1134 aa11.76□□□□□ -0.53
SMC5-203ENST00000475540 DMRTB1Q96MA1 342 aa11.76□□□□□ -0.53
SMC5-203ENST00000475540 PBX4Q9BYU1 374 aa11.76□□□□□ -0.53
SMC5-203ENST00000475540 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.76□□□□□ -0.53
SMC5-203ENST00000475540 SPATA31C1P0DKV0 1188 aa11.75□□□□□ -0.53
SMC5-203ENST00000475540 EDN3P14138 238 aa11.75□□□□□ -0.53
SMC5-203ENST00000475540 IL22RA1Q8N6P7 574 aa11.75□□□□□ -0.53
SMC5-203ENST00000475540 TRIM33Q9UPN9 1127 aa11.75□□□□□ -0.53
SMC5-203ENST00000475540 NIF3L1Q9GZT8 377 aa11.74□□□□□ -0.53
SMC5-203ENST00000475540 A0A0A0MRY4 1105 aa11.73□□□□□ -0.53
SMC5-203ENST00000475540 FAM229AH3BQW9 127 aa11.73□□□□□ -0.53
SMC5-203ENST00000475540 LOC100996750A0A140TA64 210 aa11.72□□□□□ -0.53
SMC5-203ENST00000475540 KRBA1A5PL33 1030 aa11.72□□□□□ -0.53
SMC5-203ENST00000475540 FAM177BA6PVY3 158 aa11.72□□□□□ -0.53
SMC5-203ENST00000475540 ILDR2Q71H61 639 aa11.72□□□□□ -0.53
SMC5-203ENST00000475540 KRTAP4-6Q9BYQ5 205 aa11.72□□□□□ -0.53
SMC5-203ENST00000475540 DZANK1Q9NVP4 752 aa11.72□□□□□ -0.53
SMC5-203ENST00000475540 GPR182O15218 404 aa11.71□□□□□ -0.53
SMC5-203ENST00000475540 CPNE3O75131 537 aaKnown RBP11.71□□□□□ -0.53
SMC5-203ENST00000475540 TMC7Q7Z402 723 aa11.71□□□□□ -0.53
SMC5-203ENST00000475540 DTWD1Q8N5C7 304 aa11.71□□□□□ -0.53
SMC5-203ENST00000475540 POP1Q99575 1024 aaKnown RBP11.71□□□□□ -0.53
SMC5-203ENST00000475540 OSMRQ99650 979 aa11.71□□□□□ -0.53
SMC5-203ENST00000475540 LACRTQ9GZZ8 138 aa11.71□□□□□ -0.53
SMC5-203ENST00000475540 MUC3BQ9H195 1237 aa11.71□□□□□ -0.53
SMC5-203ENST00000475540 APBA3O96018 575 aa11.7□□□□□ -0.54
SMC5-203ENST00000475540 POLR3DP05423 398 aaPredicted RBP11.7□□□□□ -0.54
SMC5-203ENST00000475540 BAG6P46379 1132 aa11.7□□□□□ -0.54
SMC5-203ENST00000475540 ORC1Q13415 861 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms